CodeSIN
NameSuccinic acid
SynonymsSpirit of amber
Identifierbutanedioic acid
FormulaC4 H6 O4
Molecular Weight118.088
SMILESC(CC(=O)O)C(=O)O
PubChem1110
Formal Charge0
Total Atoms14
Total Chiral Atoms0
Total Bonds13
Total Aromatic Bonds0
Networks1
 missing image

This ligand is also present in the following network:
Show PDB Class SubFamily Type SubType Species Orthosteric Ligand Other Ligand(s) Protein Partners Resolution Date DOI
6IGL A Peptide Endothelin ETB Homo sapiens IRL1620 - - 2.7 2018-11-21 10.1038/s41467-018-07094-0

A 2D representation of the interactions of SIN in 6IGL
colored according to ConSurf Conservation Grade (See documentation): 

 n/a   1    2    3    4    5    6    7    8    9  

(Click to enlarge 🔍)
Node1 Node2 LinkStrength Comm IsNode1Hub? IsNode2Hub? Node1Cons Node2Cons Node1Shell Node2Shell
R:R:Q352 R:R:Y350 6.76 3 No Yes 1 2 2 2
L:L:D8 R:R:Y350 8.05 3 Yes Yes 0 2 1 2
L:L:E10 R:R:Y350 4.49 3 Yes Yes 0 2 2 2
L:L:D8 R:R:Q352 15.66 3 Yes No 0 1 1 2
L:L:?7 L:L:D8 4.02 0 No Yes 0 0 0 1
L:L:?7 L:L:E9 18.32 0 No No 0 0 0 1
L:L:D8 L:L:E10 10.39 3 Yes Yes 0 0 1 2
L:L:A11 L:L:D8 6.18 0 No Yes 0 0 2 1
L:L:E9 R:R:M245 2.71 0 No No 0 1 1 2
StatisticsValue
Average Number Of Links2.00
Average Number Of Links With An Hub1.00
Average Interaction Strength11.17
Average Nodes In Shell8.00
Average Hubs In Shell3.00
Average Links In Shell9.00
Average Links Mediated by Hubs In Shell7.00
Physico-chemical properties of the nodes interacting with this ligand (click to enlarge 🔍)
Location of the nodes interacting with this ligand (click to enlarge 🔍)
StatisticsValue
Average Number Of Links2.00
Average Number Of Links With An Hub1.00
Average Interaction Strength11.17
Average Nodes In Shell8.00
Average Hubs In Shell3.00
Average Links In Shell9.00
Average Links Mediated by Hubs In Shell7.00

missing image


Physico-chemical properties of the nodes interacting with this ligand

(Click to enlarge 🔍)

missing image


Location of the nodes interacting with this ligand

(Click to enlarge 🔍)