webPSN

Color	Trajectory Frequency
	0 < Freq. ≤ 10
	10 < Freq. ≤ 20
	20 < Freq. ≤ 30
	30 < Freq. ≤ 40
	40 < Freq. ≤ 50
	50 < Freq. ≤ 60
	60 < Freq. ≤ 70
	70 < Freq. ≤ 80
	80 < Freq. ≤ 90
	90 < Freq. ≤ 100

Index	Node1	Node2	Freq	Hub1?	Hub2?	Community
1	A:A:1	A:A:2	99.99	No	No	0
2	A:A:2	A:A:3	100	No	No	0
3	A:A:3	A:A:4	100	No	No	0
4	A:A:5	A:A:6	100	No	No	0
5	A:A:6	A:A:7	98.6	No	Yes	0
6	A:A:7	A:A:8	72.56	Yes	No	0
7	A:A:7	A:A:89	100	Yes	No	0
8	A:A:7	A:A:91	64.62	Yes	Yes	0
9	A:A:8	A:A:9	99.93	No	No	1
10	A:A:8	A:A:86	91.18	No	Yes	1
11	A:A:86	A:A:9	51.17	Yes	No	1
12	A:A:87	A:A:9	68.05	No	No	1
13	A:A:10	A:A:11	71.38	No	No	0
14	A:A:11	A:A:85	64.18	No	No	0
15	A:A:13	A:A:16	56.17	No	No	0
16	A:A:13	A:A:81	99.32	No	No	0
17	A:A:14	A:A:15	100	No	No	0
18	A:A:15	A:A:16	99.75	No	No	0
19	A:A:17	A:A:18	95.31	No	No	0
20	A:A:20	A:A:21	100	No	No	0
21	A:A:20	B:B:8	88.22	No	No	0
22	A:A:21	A:A:22	100	No	No	0
23	A:A:22	A:A:23	100	No	No	0
24	A:A:22	B:B:6	96.5	No	No	0
25	A:A:23	A:A:24	92.89	No	No	0
26	A:A:26	A:A:27	69.48	No	No	0
27	A:A:27	A:A:28	99.93	No	No	0
28	A:A:28	A:A:29	88.1	No	No	0
29	A:A:29	A:A:30	100	No	No	0
30	A:A:30	A:A:31	100	No	No	0
31	A:A:31	A:A:32	89.18	No	No	0
32	A:A:31	A:A:36	75.75	No	Yes	0
33	A:A:35	A:A:36	100	No	Yes	0
34	A:A:35	A:A:58	52.03	No	No	0
35	A:A:36	A:A:37	100	Yes	No	0
36	A:A:36	A:A:57	60.54	Yes	Yes	0
37	A:A:37	A:A:38	97.49	No	No	0
38	A:A:40	A:A:41	100	No	No	0
39	A:A:41	A:A:42	100	No	Yes	0
40	A:A:42	A:A:43	99.61	Yes	No	0
41	A:A:42	A:A:47	71.76	Yes	No	0
42	A:A:47	A:A:48	97.58	No	No	0
43	A:A:48	A:A:49	90.94	No	No	0
44	A:A:49	A:A:51	100	No	No	0
45	A:A:51	A:A:52	100	No	No	0
46	A:A:51	A:A:91	85.04	No	Yes	0
47	A:A:52	A:A:89	58.72	No	No	0
48	A:A:53	A:A:54	100	No	No	0
49	A:A:53	A:A:56	62.86	No	No	0
50	A:A:56	A:A:91	100	No	Yes	0
51	A:A:57	A:A:58	100	Yes	No	0
52	A:A:58	A:A:59	99.86	No	No	0
53	A:A:61	A:A:62	100	No	No	0
54	A:A:61	A:A:64	99.82	No	No	0
55	A:A:64	A:A:65	100	No	No	0
56	A:A:65	A:A:66	85.93	No	No	0
57	A:A:66	A:A:67	95.58	No	No	0
58	A:A:70	A:A:71	100	No	Yes	0
59	A:A:71	A:A:72	100	Yes	No	0
60	A:A:71	A:A:75	74.5	Yes	No	0
61	A:A:71	B:B:4	96.81	Yes	No	2
62	A:A:71	B:B:5	52.14	Yes	No	2
63	A:A:72	A:A:73	100	No	No	0
64	A:A:75	A:A:76	99.99	No	No	0
65	A:A:76	A:A:77	100	No	No	0
66	A:A:76	A:A:80	63.78	No	No	0
67	A:A:77	A:A:78	99.12	No	No	0
68	A:A:78	A:A:79	95.65	No	No	0
69	A:A:79	A:A:80	97.12	No	No	0
70	A:A:80	A:A:81	100	No	No	0
71	A:A:83	A:A:84	99.49	No	No	0
72	A:A:84	A:A:85	100	No	No	0
73	A:A:85	A:A:86	59.62	No	Yes	0
74	A:A:86	A:A:87	99.93	Yes	No	1
75	A:A:88	A:A:89	99.96	No	No	0
76	A:A:90	A:A:91	99.99	No	Yes	0
77	A:A:93	A:A:94	64.71	No	No	0
78	B:B:3	B:B:4	55.13	No	No	0
79	B:B:4	B:B:5	91.48	No	No	2
80	B:B:5	B:B:6	100	No	No	0
81	A:A:17	B:B:8	79.42	No	No	0
82	A:A:56	A:A:57	52.95	No	Yes	0
83	A:A:23	A:A:36	25.42	No	Yes	0
84	A:A:57	A:A:67	38.02	Yes	No	0
85	A:A:49	A:A:50	24.14	No	No	0
86	A:A:34	A:A:57	22.43	No	Yes	0
87	A:A:2	A:A:5	26.27	No	No	0
88	A:A:81	A:A:82	0.6	No	No	0
89	A:A:61	A:A:63	0	No	No	0
90	A:A:54	A:A:55	0.14	No	No	0
91	A:A:91	A:A:92	0.08	Yes	No	0
92	A:A:18	A:A:19	0	No	No	0
93	A:A:74	A:A:75	1.65	No	No	0
94	A:A:42	A:A:44	0	Yes	No	0
95	A:A:21	A:A:39	0	No	No	0
96	A:A:69	A:A:70	0	No	No	0
97	A:A:67	A:A:68	3.24	No	No	0
98	A:A:30	A:A:33	10.48	No	No	0
99	A:A:12	A:A:13	0	No	No	0
100	A:A:60	A:A:88	0.56	No	No	0
101	A:A:46	A:A:47	0	No	No	0
102	B:B:6	B:B:7	0	No	No	0
103	A:A:24	A:A:25	0	No	No	0
104	A:A:45	A:A:46	0	No	No	0
105	A:A:4	A:A:93	11.01	No	No	0

Index: link id, click on each number to highlight the corresponding link in the 3D visualization.

Node1 Node2: the two nodes of the corresponding link.

Freq: the trajectory frequency of this link.

Hub1?, Hub2?: "Yes" if the corresponding node has more than 3 links, otherwise "No".

Community: the id of the community the link belong to, otherwise 0.

Value1, Value2: these columns report the values present in the user submitted external values file (if any).

Color	Trajectory Frequency
	0 < Freq. ≤ 10
	10 < Freq. ≤ 20
	20 < Freq. ≤ 30
	30 < Freq. ≤ 40
	40 < Freq. ≤ 50
	50 < Freq. ≤ 60
	60 < Freq. ≤ 70
	70 < Freq. ≤ 80
	80 < Freq. ≤ 90
	90 < Freq. ≤ 100

Index	Hub	Freq	Num Of Links	Community
1	A:A:7	63.45	4	0
2	A:A:36	86.53	5	0
3	A:A:42	64.08	4	0
4	A:A:57	76.95	5	0
5	A:A:71	91.54	5	2
6	A:A:86	46.1	4	1
7	A:A:91	99.11	5	0

Index: hub id, click on each number to highlight the corresponding hub in the 3D visualization.

Hub: the hub being considered.

Freq: the trajectory frequency of the corresponding hub.

Num Of Links: the number of links of the corresponding hub.

Community: the id of the community the link belong to, otherwise 0.

Value: this column reports the value present in the user submitted external values file (if any).

Color	Relative Recurrence (%)
	0 < rr ≤ 10
	10 < rr ≤ 20
	20 < rr ≤ 30
	30 < rr ≤ 40
	40 < rr ≤ 50
	50 < rr ≤ 60
	60 < rr ≤ 70
	70 < rr ≤ 80
	80 < rr ≤ 90
	90 < rr ≤ 100

Index	Node1	Node2	Recurrency	Freq	Hub1?	Hub2?	Community
1	A:A:5	A:A:6	23.9072	100	No	No	0
2	A:A:6	A:A:7	27.7877	98.6	No	Yes	0
3	A:A:7	A:A:8	36.6191	72.56	Yes	No	0
4	A:A:8	A:A:86	26.0036	91.18	No	Yes	1
5	A:A:7	A:A:91	64.7636	64.62	Yes	Yes	0
6	A:A:56	A:A:91	94.2016	100	No	Yes	0
7	A:A:56	A:A:57	98.7065	52.95	No	Yes	0
8	A:A:36	A:A:57	100	60.54	Yes	Yes	0
9	A:A:23	A:A:36	93.8894	25.42	No	Yes	0
10	A:A:22	A:A:23	90.1427	100	No	No	0
11	A:A:22	B:B:6	75.5129	96.5	No	No	0
12	B:B:5	B:B:6	71.6771	100	No	No	0
13	A:A:71	B:B:5	62.8011	52.14	Yes	No	2
14	A:A:71	A:A:75	49.6878	74.5	Yes	No	0
15	A:A:75	A:A:76	44.2462	99.99	No	No	0
16	A:A:76	A:A:80	32.7386	63.78	No	No	0
17	A:A:80	A:A:81	26.8956	100	No	No	0
18	A:A:21	A:A:22	25.6467	100	No	No	0
19	A:A:31	A:A:36	30.8653	75.75	No	Yes	0
20	A:A:30	A:A:31	24.3979	100	No	No	0
21	A:A:51	A:A:91	42.5513	85.04	No	Yes	0
22	A:A:49	A:A:51	38.9384	100	No	No	0
23	A:A:48	A:A:49	33.0062	90.94	No	No	0
24	A:A:47	A:A:48	29.215	97.58	No	No	0
25	A:A:57	A:A:67	30.5085	38.02	Yes	No	0
26	A:A:66	A:A:67	24.1302	95.58	No	No	0
27	A:A:65	A:A:66	20.0714	85.93	No	No	0

Index: link id, click on each number to highlight the corresponding link in the 3D visualization.

Node1 Node2: the two nodes of the corresponding link.

Recurrency: the relative recurrency in the filtered pool of shortest paths.

Freq: the trajectory frequency of this link.

Hub1?, Hub2?: "Yes" if the corresponding node has more than 3 links, otherwise "No".

Community: the id of the community the link belong to, otherwise 0.

Value1, Value2: these columns report the values present in the user submitted external values file (if any).

Color	Relative Recurrence (%)
	0 < rr ≤ 10
	10 < rr ≤ 20
	20 < rr ≤ 30
	30 < rr ≤ 40
	40 < rr ≤ 50
	50 < rr ≤ 60
	60 < rr ≤ 70
	70 < rr ≤ 80
	80 < rr ≤ 90
	9 < rr ≤ 10

Here, those paths that begin and end at given residue pair(s) or that pass through a residue are used to generate a novel metapath. Such a path filtering is particularly recommended if some information on allosteric residues is available. The selection syntax for a residue pair ("Pairs") is C:C:c534,A:A:?600 (the lower-case "c" stands for cytosine and "?" indicates any non standard amino acid or nucleotide residue). Selection of more than one apical residue pair has the following syntax: C:C:c534,A:A:?600,C:C:c534,A:A:E41. Only one residue can be selected as a tail ("Tail"). For midway residue(s), each residue must be separated by a comma as well e.g. A:A:?600,A:A:E41.

Index	Node1	Node2	Recurrency	Freq	Hub1?	Hub2?	Community	Value1	Value2

Index: link id, click on each number to highlight the corresponding link in the 3D visualization.

Node1 Node2: the two nodes of the corresponding link.

Recurrency: the relative recurrency in the filtered pool of shortest paths.

Freq: the trajectory frequency of this link.

Hub1?, Hub2?: "Yes" if the corresponding node has more than 3 links, otherwise "No".

Community: the id of the community the link belong to, otherwise 0.

Value1, Value2: these columns report the values present in the user submitted external values file (if any).

Download PSN data

Trj Stats Plots:

Stat 1	Stat 2	Documentation

2D representation of the global metapath and histograms of path distribution according to several parameters:

2D representation of the user filetered metapath and histograms of path distribution according to several parameters:

Net Summary
I_min	4.62969
Number of Linked Nodes	100
Number of Links	105
Number of Hubs	7
Number of Links mediated by Hubs	30
Number of Communities	2
Number of Nodes involved in Communities	7
Number of Links involved in Communities	8

Path Summary
Number Of Nodes in MetaPath	28
Number Of Links MetaPath	27
Number of Shortest Paths	4475
Length Of Smallest Path	3
Average Path Length	10.4139
Length of Longest Path	25
Minimum Path Force	2.405
Average Path Force	6.18403
Maximum Path Force	10.43
Minimum Path Correlation	0.814
Average Path Correlation	0.887164
Maximum Path Correlation	0.932
Minimum % Of Corr. Nodes	4.54545
Average % Of Corr. Nodes	26.0558
Maximum % Of Corr. Nodes	100
Minimum Path Hubs %	0
Average Path Hubs %	25.5035
Maximum Path Hubs %	75

Filtered Path Summary
Number Of Nodes in MetaPath	available after path filtering
Number Of Links MetaPath	available after path filtering
Number of Shortest Paths	available after path filtering
Length Of Smallest Path	available after path filtering
Average Path Length	available after path filtering
Length of Longest Path	available after path filtering
Minimum Path Force	available after path filtering
Average Path Force	available after path filtering
Maximum Path Force	available after path filtering
Minimum Path Correlation	available after path filtering
Average Path Correlation	available after path filtering
Maximum Path Correlation	available after path filtering
Minimum % Of Corr. Nodes	available after path filtering
Average % Of Corr. Nodes	available after path filtering
Maximum % Of Corr. Nodes	available after path filtering
Minimum Path Hubs %	available after path filtering
Average Path Hubs %	available after path filtering
Maximum Path Hubs %	available after path filtering

Details about the values in these tables can be found in the corresponding documentation page .

You can download a compressed (zip) file with all submitted structures, 3D outputs (as PyMol and VMD scripts) and numerical data files (as csv and plain text files). The zip bundle also contains an output manual explaining the meaning of all files and numerical data.

Download webpsn_output_job509tbqcu.zip