Color Trajectory Frequency
      0 < Freq. ≤ 10
      10 < Freq. ≤ 20
      20 < Freq. ≤ 30
      30 < Freq. ≤ 40
      40 < Freq. ≤ 50
      50 < Freq. ≤ 60
      60 < Freq. ≤ 70
      70 < Freq. ≤ 80
      80 < Freq. ≤ 90
      90 < Freq. ≤ 100
Index Hub Freq Num Of Links Community Value
1A:A:7 63.45400
2A:A:36 86.53500
3A:A:42 64.08400
4A:A:57 76.95500
5A:A:71 91.54520
6A:A:86 46.1410
7A:A:91 99.11500

Index: hub id, click on each number to highlight the corresponding hub in the 3D visualization.

Hub: the hub being considered.

Freq: the trajectory frequency of the corresponding hub.

Num Of Links: the number of links of the corresponding hub.

Community: the id of the community the link belong to, otherwise 0.

Value: this column reports the value present in the user submitted external values file (if any).

Color Relative Recurrence (%)
      0 < rr ≤ 10
      10 < rr ≤ 20
      20 < rr ≤ 30
      30 < rr ≤ 40
      40 < rr ≤ 50
      50 < rr ≤ 60
      60 < rr ≤ 70
      70 < rr ≤ 80
      80 < rr ≤ 90
      90 < rr ≤ 100
Index Node1 Node2 Recurrency Freq Hub1? Hub2? Community Value1 Value2
1A:A:5 A:A:6 23.9072100NoNo000
2A:A:6 A:A:7 27.787798.6NoYes000
3A:A:7 A:A:8 36.619172.56YesNo000
4A:A:8 A:A:86 26.003691.18NoYes100
5A:A:7 A:A:91 64.763664.62YesYes000
6A:A:56 A:A:91 94.2016100NoYes000
7A:A:56 A:A:57 98.706552.95NoYes000
8A:A:36 A:A:57 10060.54YesYes000
9A:A:23 A:A:36 93.889425.42NoYes000
10A:A:22 A:A:23 90.1427100NoNo000
11A:A:22 B:B:6 75.512996.5NoNo000
12B:B:5 B:B:6 71.6771100NoNo000
13A:A:71 B:B:5 62.801152.14YesNo200
14A:A:71 A:A:75 49.687874.5YesNo000
15A:A:75 A:A:76 44.246299.99NoNo000
16A:A:76 A:A:80 32.738663.78NoNo000
17A:A:80 A:A:81 26.8956100NoNo000
18A:A:21 A:A:22 25.6467100NoNo000
19A:A:31 A:A:36 30.865375.75NoYes000
20A:A:30 A:A:31 24.3979100NoNo000
21A:A:51 A:A:91 42.551385.04NoYes000
22A:A:49 A:A:51 38.9384100NoNo000
23A:A:48 A:A:49 33.006290.94NoNo000
24A:A:47 A:A:48 29.21597.58NoNo000
25A:A:57 A:A:67 30.508538.02YesNo000
26A:A:66 A:A:67 24.130295.58NoNo000
27A:A:65 A:A:66 20.071485.93NoNo000

Index: link id, click on each number to highlight the corresponding link in the 3D visualization.

Node1 Node2: the two nodes of the corresponding link.

Recurrency: the relative recurrency in the filtered pool of shortest paths.

Freq: the trajectory frequency of this link.

Hub1?, Hub2?: "Yes" if the corresponding node has more than 3 links, otherwise "No".

Community: the id of the community the link belong to, otherwise 0.

Value1, Value2: these columns report the values present in the user submitted external values file (if any).

Color Relative Recurrence (%)
      0 < rr ≤ 10
      10 < rr ≤ 20
      20 < rr ≤ 30
      30 < rr ≤ 40
      40 < rr ≤ 50
      50 < rr ≤ 60
      60 < rr ≤ 70
      70 < rr ≤ 80
      80 < rr ≤ 90
      9 < rr ≤ 10

Here, those paths that begin and end at given residue pair(s) or that pass through a residue are used to generate a novel metapath. Such a path filtering is particularly recommended if some information on allosteric residues is available. The selection syntax for a residue pair ("Pairs") is C:C:c534,A:A:?600 (the lower-case "c" stands for cytosine and "?" indicates any non standard amino acid or nucleotide residue). Selection of more than one apical residue pair has the following syntax: C:C:c534,A:A:?600,C:C:c534,A:A:E41. Only one residue can be selected as a tail ("Tail"). For midway residue(s), each residue must be separated by a comma as well e.g. A:A:?600,A:A:E41.

Midway



Index Node1 Node2 Recurrency Freq Hub1? Hub2? Community Value1 Value2

Index: link id, click on each number to highlight the corresponding link in the 3D visualization.

Node1 Node2: the two nodes of the corresponding link.

Recurrency: the relative recurrency in the filtered pool of shortest paths.

Freq: the trajectory frequency of this link.

Hub1?, Hub2?: "Yes" if the corresponding node has more than 3 links, otherwise "No".

Community: the id of the community the link belong to, otherwise 0.

Value1, Value2: these columns report the values present in the user submitted external values file (if any).

Download PSN data

Trj Stats Plots:

Stat 1 Stat 2 Documentation

2D representation of the global metapath and histograms of path distribution according to several parameters:

2D representation of the user filetered metapath and histograms of path distribution according to several parameters:

Net Summary
Imin 4.62969
Number of Linked Nodes 100
Number of Links 105
Number of Hubs 7
Number of Links mediated by Hubs 30
Number of Communities 2
Number of Nodes involved in Communities 7
Number of Links involved in Communities 8
Path Summary
Number Of Nodes in MetaPath 28
Number Of Links MetaPath 27
Number of Shortest Paths 4475
Length Of Smallest Path 3
Average Path Length 10.4139
Length of Longest Path 25
Minimum Path Force 2.405
Average Path Force 6.18403
Maximum Path Force 10.43
Minimum Path Correlation 0.814
Average Path Correlation 0.887164
Maximum Path Correlation 0.932
Minimum % Of Corr. Nodes 4.54545
Average % Of Corr. Nodes 26.0558
Maximum % Of Corr. Nodes 100
Minimum Path Hubs % 0
Average Path Hubs % 25.5035
Maximum Path Hubs % 75
Filtered Path Summary
Number Of Nodes in MetaPath available after path filtering
Number Of Links MetaPath available after path filtering
Number of Shortest Paths available after path filtering
Length Of Smallest Path available after path filtering
Average Path Length available after path filtering
Length of Longest Path available after path filtering
Minimum Path Force available after path filtering
Average Path Force available after path filtering
Maximum Path Force available after path filtering
Minimum Path Correlation available after path filtering
Average Path Correlation available after path filtering
Maximum Path Correlation available after path filtering
Minimum % Of Corr. Nodes available after path filtering
Average % Of Corr. Nodes available after path filtering
Maximum % Of Corr. Nodes available after path filtering
Minimum Path Hubs % available after path filtering
Average Path Hubs % available after path filtering
Maximum Path Hubs % available after path filtering

Details about the values in these tables can be found in the corresponding documentation page .

You can download a compressed (zip) file with all submitted structures, 3D outputs (as PyMol and VMD scripts) and numerical data files (as csv and plain text files). The zip bundle also contains an output manual explaining the meaning of all files and numerical data.

Download webpsn_output_job509tbqcu.zip