Color Trajectory Frequency
      0 < Freq. ≤ 10
      10 < Freq. ≤ 20
      20 < Freq. ≤ 30
      30 < Freq. ≤ 40
      40 < Freq. ≤ 50
      50 < Freq. ≤ 60
      60 < Freq. ≤ 70
      70 < Freq. ≤ 80
      80 < Freq. ≤ 90
      90 < Freq. ≤ 100
Index Hub Freq Num Of Links Community Value
1A:A:7 74.55400
2A:A:13 67.61400
3A:A:25 56.42300
4A:A:30 69.27300
5A:A:31 50.53400
6A:A:33 60.92400
7A:A:36 83.12500
8A:A:42 82.67400
9A:A:47 52.87400
10A:A:53 50400
11A:A:56 70.53430
12A:A:57 84430
13A:A:61 97.36430
14A:A:91 96.44530
15A:A:9 30.39400
16A:A:11 32.68400
17A:A:34 28.01500
18A:A:35 38.69500
19A:A:39 6.74400
20A:A:41 21.83400
21A:A:46 31.72450
22A:A:49 33.1400
23A:A:60 7.47400
24A:A:69 16.91400
25A:A:76 38.9400
26A:A:86 49.8400

Index: hub id, click on each number to highlight the corresponding hub in the 3D visualization.

Hub: the hub being considered.

Freq: the trajectory frequency of the corresponding hub.

Num Of Links: the number of links of the corresponding hub.

Community: the id of the community the link belong to, otherwise 0.

Value: this column reports the value present in the user submitted external values file (if any).

Color Relative Recurrence (%)
      0 < rr ≤ 10
      10 < rr ≤ 20
      20 < rr ≤ 30
      30 < rr ≤ 40
      40 < rr ≤ 50
      50 < rr ≤ 60
      60 < rr ≤ 70
      70 < rr ≤ 80
      80 < rr ≤ 90
      90 < rr ≤ 100
Index Node1 Node2 Recurrency Freq Hub1? Hub2? Community Value1 Value2
1A:A:2 A:A:3 28.3514100NoNo000
2A:A:5 A:A:6 21.467499.89NoNo000
3A:A:6 A:A:7 34.510997.25NoYes000
4A:A:3 A:A:91 46.195775.56NoYes000
5A:A:7 A:A:91 63.496478.42YesYes000
6A:A:7 A:A:8 57.33767.53YesNo000
7A:A:8 A:A:9 31.884199.86NoYes300
8A:A:8 A:A:86 26.449387.6NoYes300
9A:A:86 A:A:87 36.684899.93YesNo300
10A:A:10 A:A:9 83.423911.1NoYes000
11A:A:10 A:A:11 81.793596.75NoYes000
12A:A:11 A:A:12 92.11963.3YesNo000
13A:A:12 A:A:13 85.41670NoYes000
14A:A:13 A:A:14 49.365955.92YesNo000
15A:A:85 A:A:86 57.33777.98NoYes000
16A:A:84 A:A:85 49.9094100NoNo000
17A:A:83 A:A:84 47.644992.1NoNo000
18A:A:13 A:A:83 44.746440.01YesNo000
19A:A:14 A:A:15 33.0616100NoNo000
20A:A:11 A:A:18 42.39139.05YesNo000
21A:A:56 A:A:91 38.224694.54YesYes400
22A:A:55 A:A:56 46.01450.16NoYes000
23A:A:37 A:A:55 62.04710NoNo000
24A:A:36 A:A:37 77.9891100YesNo000
25A:A:23 A:A:36 50.996427.05NoYes000
26A:A:22 A:A:23 52.808100NoNo000
27A:A:90 A:A:91 53.260999.99NoYes000
28A:A:57 A:A:90 49.909459.56YesNo000
29A:A:34 A:A:57 67.572516.54YesYes100
30A:A:34 A:A:36 34.873217.83YesYes100
31A:A:35 A:A:58 61.594289.13YesNo100
32A:A:35 A:A:69 57.15580YesYes100
33A:A:69 A:A:70 48.46010.03YesNo000
34A:A:70 A:A:71 45.742899.99NoNo000
35A:A:26 A:A:69 31.15940NoYes000
36A:A:26 A:A:27 22.554383.22NoNo000
37A:A:33 A:A:34 22.73550YesYes100
38A:A:29 A:A:30 20.1993100NoYes000
39A:A:37 A:A:38 47.463898.26NoNo000
40A:A:38 A:A:39 44.38410NoYes000
41A:A:39 A:A:40 58.152212.2YesNo000
42A:A:40 A:A:41 55.3442100NoYes000
43A:A:41 A:A:42 32.0652100YesYes200
44A:A:7 A:A:89 30.253699.98YesNo000
45A:A:52 A:A:89 41.938457.65NoNo000
46A:A:51 A:A:52 71.2862100NoNo000
47A:A:49 A:A:51 65.3986100YesNo000
48A:A:48 A:A:49 29.076186.98NoYes000
49A:A:47 A:A:48 22.373297.18YesNo000
50A:A:53 A:A:56 32.065274.84YesYes000
51A:A:52 A:A:53 55.978367.55NoYes000
52A:A:46 A:A:49 23.73190.2YesYes200
53A:A:46 A:A:47 22.28260YesYes200
54A:A:53 A:A:54 27.4457100YesNo000
55A:A:54 A:A:55 25.90580.09NoNo000
56A:A:88 A:A:89 38.858799.96NoNo000
57A:A:60 A:A:88 39.76450.04YesNo000
58A:A:60 A:A:61 96.28620.09YesYes000
59A:A:57 A:A:59 46.376876.83YesNo100
60A:A:59 A:A:60 1000NoYes000
61A:A:61 A:A:64 62.862399.71YesNo000
62A:A:64 A:A:65 55.3442100NoNo000
63A:A:65 A:A:66 41.757291.58NoNo000
64A:A:66 A:A:67 27.989191.3NoNo000
65A:A:22 A:A:71 51.08756.64NoNo000
66A:A:71 A:A:72 77.717499.74NoNo000
67A:A:72 A:A:73 69.384199.72NoNo000
68A:A:13 A:A:81 81.793598.37YesNo000
69A:A:80 A:A:81 73.0978100NoNo000
70A:A:76 A:A:80 49.184854.99YesNo700
71A:A:75 A:A:76 28.8949100NoYes000
72A:A:73 A:A:74 63.31520NoNo000
73A:A:74 A:A:75 28.71381.51NoNo000
74A:A:76 A:A:77 27.7174100YesNo000
75A:A:18 A:A:19 38.31520NoNo000
76A:A:87 A:A:9 53.623283.67NoYes300
77A:A:21 A:A:39 25.09060NoYes500
78A:A:31 A:A:36 33.786253.53YesYes100
79A:A:42 A:A:47 40.126889.55YesYes200
80A:A:74 A:A:77 31.61230.94NoNo000
81A:A:11 A:A:45 48.18840YesNo000
82A:A:19 A:A:41 35.68841.38NoYes000
83A:A:58 A:A:59 51.811699.84NoNo100
84A:A:60 A:A:87 88.22460YesNo000
85A:A:45 A:A:48 22.1920NoNo000
86A:A:45 A:A:46 26.44930NoYes000
87A:A:35 A:A:36 33.6957100YesYes100
88A:A:21 A:A:22 33.5145100NoNo000

Index: link id, click on each number to highlight the corresponding link in the 3D visualization.

Node1 Node2: the two nodes of the corresponding link.

Recurrency: the relative recurrency in the filtered pool of shortest paths.

Freq: the trajectory frequency of this link.

Hub1?, Hub2?: "Yes" if the corresponding node has more than 3 links, otherwise "No".

Community: the id of the community the link belong to, otherwise 0.

Value1, Value2: these columns report the values present in the user submitted external values file (if any).

Color Relative Recurrence (%)
      0 < rr ≤ 10
      10 < rr ≤ 20
      20 < rr ≤ 30
      30 < rr ≤ 40
      40 < rr ≤ 50
      50 < rr ≤ 60
      60 < rr ≤ 70
      70 < rr ≤ 80
      80 < rr ≤ 90
      9 < rr ≤ 10

Here, those paths that begin and end at given residue pair(s) or that pass through a residue are used to generate a novel metapath. Such a path filtering is particularly recommended if some information on allosteric residues is available. The selection syntax for a residue pair ("Pairs") is C:C:c534,A:A:?600 (the lower-case "c" stands for cytosine and "?" indicates any non standard amino acid or nucleotide residue). Selection of more than one apical residue pair has the following syntax: C:C:c534,A:A:?600,C:C:c534,A:A:E41. Only one residue can be selected as a tail ("Tail"). For midway residue(s), each residue must be separated by a comma as well e.g. A:A:?600,A:A:E41.

Midway



Index Node1 Node2 Recurrency Freq Hub1? Hub2? Community Value1 Value2

Index: link id, click on each number to highlight the corresponding link in the 3D visualization.

Node1 Node2: the two nodes of the corresponding link.

Recurrency: the relative recurrency in the filtered pool of shortest paths.

Freq: the trajectory frequency of this link.

Hub1?, Hub2?: "Yes" if the corresponding node has more than 3 links, otherwise "No".

Community: the id of the community the link belong to, otherwise 0.

Value1, Value2: these columns report the values present in the user submitted external values file (if any).

Download PSN data

Trj Stats Plots:

Stat 1 Stat 2 Documentation

2D representation of the global metapath and histograms of path distribution according to several parameters:

2D representation of the user filetered metapath and histograms of path distribution according to several parameters:

Net Summary
Imin 4.56612
Number of Linked Nodes 94
Number of Links 130
Number of Hubs 26
Number of Links mediated by Hubs 85
Number of Communities 7
Number of Nodes involved in Communities 36
Number of Links involved in Communities 47
Path Summary
Number Of Nodes in MetaPath 89
Number Of Links MetaPath 88
Number of Shortest Paths 6419
Length Of Smallest Path 3
Average Path Length 8.8774
Length of Longest Path 17
Minimum Path Force 1.73
Average Path Force 5.30654
Maximum Path Force 10.685
Minimum Path Correlation 0.805
Average Path Correlation 0.887529
Maximum Path Correlation 0.943
Minimum % Of Corr. Nodes 7.14286
Average % Of Corr. Nodes 27.079
Maximum % Of Corr. Nodes 100
Minimum Path Hubs % 0
Average Path Hubs % 40.6612
Maximum Path Hubs % 100
Filtered Path Summary
Number Of Nodes in MetaPath available after path filtering
Number Of Links MetaPath available after path filtering
Number of Shortest Paths available after path filtering
Length Of Smallest Path available after path filtering
Average Path Length available after path filtering
Length of Longest Path available after path filtering
Minimum Path Force available after path filtering
Average Path Force available after path filtering
Maximum Path Force available after path filtering
Minimum Path Correlation available after path filtering
Average Path Correlation available after path filtering
Maximum Path Correlation available after path filtering
Minimum % Of Corr. Nodes available after path filtering
Average % Of Corr. Nodes available after path filtering
Maximum % Of Corr. Nodes available after path filtering
Minimum Path Hubs % available after path filtering
Average Path Hubs % available after path filtering
Maximum Path Hubs % available after path filtering

Details about the values in these tables can be found in the corresponding documentation page .

You can download a compressed (zip) file with all submitted structures, 3D outputs (as PyMol and VMD scripts) and numerical data files (as csv and plain text files). The zip bundle also contains an output manual explaining the meaning of all files and numerical data.

Download webpsn_output_jobHuk87X.zip