webPSN

Color	Trajectory Frequency
	0 < Freq. ≤ 10
	10 < Freq. ≤ 20
	20 < Freq. ≤ 30
	30 < Freq. ≤ 40
	40 < Freq. ≤ 50
	50 < Freq. ≤ 60
	60 < Freq. ≤ 70
	70 < Freq. ≤ 80
	80 < Freq. ≤ 90
	90 < Freq. ≤ 100

Index	Node1	Node2	Freq	Hub1?	Hub2?	Community
1	A:A:1	A:A:2	100	No	No	0
2	A:A:2	A:A:3	100	No	No	0
3	A:A:2	A:A:5	90.28	No	No	0
4	A:A:3	A:A:4	100	No	No	0
5	A:A:3	A:A:91	75.56	No	Yes	0
6	A:A:5	A:A:6	99.89	No	No	0
7	A:A:6	A:A:7	97.25	No	Yes	0
8	A:A:7	A:A:8	67.53	Yes	No	0
9	A:A:7	A:A:89	99.98	Yes	No	0
10	A:A:7	A:A:91	78.42	Yes	Yes	0
11	A:A:8	A:A:9	99.86	No	Yes	1
12	A:A:8	A:A:86	87.6	No	Yes	1
13	A:A:86	A:A:9	58.55	Yes	Yes	1
14	A:A:87	A:A:9	83.67	No	Yes	1
15	A:A:10	A:A:11	96.75	No	No	0
16	A:A:13	A:A:14	55.92	Yes	No	0
17	A:A:13	A:A:81	98.37	Yes	No	0
18	A:A:14	A:A:15	100	No	No	0
19	A:A:15	A:A:16	99.37	No	No	0
20	A:A:17	A:A:18	93.61	No	No	0
21	A:A:20	A:A:21	100	No	No	0
22	A:A:21	A:A:22	100	No	No	0
23	A:A:22	A:A:23	100	No	No	0
24	A:A:22	A:A:71	56.64	No	No	0
25	A:A:23	A:A:24	98.03	No	No	0
26	A:A:26	A:A:27	83.22	No	No	0
27	A:A:27	A:A:28	100	No	No	0
28	A:A:28	A:A:29	81.15	No	No	0
29	A:A:29	A:A:30	100	No	No	0
30	A:A:30	A:A:31	99.97	No	No	0
31	A:A:31	A:A:32	78.65	No	No	0
32	A:A:31	A:A:36	53.53	No	Yes	0
33	A:A:35	A:A:36	100	No	Yes	0
34	A:A:35	A:A:58	89.13	No	No	0
35	A:A:36	A:A:37	100	Yes	No	0
36	A:A:37	A:A:38	98.26	No	No	0
37	A:A:40	A:A:41	100	No	No	0
38	A:A:41	A:A:42	100	No	Yes	0
39	A:A:42	A:A:43	99.47	Yes	No	0
40	A:A:42	A:A:47	89.55	Yes	No	0
41	A:A:47	A:A:48	97.18	No	No	0
42	A:A:48	A:A:49	86.98	No	No	0
43	A:A:49	A:A:51	100	No	No	0
44	A:A:51	A:A:52	100	No	No	0
45	A:A:52	A:A:53	67.55	No	Yes	0
46	A:A:52	A:A:89	57.65	No	No	0
47	A:A:53	A:A:54	100	Yes	No	0
48	A:A:53	A:A:56	74.84	Yes	No	0
49	A:A:56	A:A:91	94.54	No	Yes	0
50	A:A:57	A:A:58	100	No	No	2
51	A:A:57	A:A:59	76.83	No	No	2
52	A:A:57	A:A:90	59.56	No	No	0
53	A:A:58	A:A:59	99.84	No	No	2
54	A:A:61	A:A:62	99.99	Yes	No	0
55	A:A:61	A:A:64	99.71	Yes	No	0
56	A:A:64	A:A:65	100	No	No	0
57	A:A:65	A:A:66	91.58	No	No	0
58	A:A:66	A:A:67	91.3	No	No	0
59	A:A:70	A:A:71	99.99	No	No	0
60	A:A:71	A:A:72	99.74	No	No	0
61	A:A:72	A:A:73	99.72	No	No	0
62	A:A:75	A:A:76	100	No	Yes	0
63	A:A:76	A:A:77	100	Yes	No	0
64	A:A:76	A:A:79	55.58	Yes	No	3
65	A:A:76	A:A:80	54.99	Yes	No	3
66	A:A:77	A:A:78	99.41	No	No	0
67	A:A:78	A:A:79	98.4	No	No	0
68	A:A:79	A:A:80	90.1	No	No	3
69	A:A:80	A:A:81	100	No	No	0
70	A:A:83	A:A:84	92.1	No	No	0
71	A:A:84	A:A:85	100	No	No	0
72	A:A:85	A:A:86	77.98	No	Yes	0
73	A:A:86	A:A:87	99.93	Yes	No	1
74	A:A:88	A:A:89	99.96	No	No	0
75	A:A:90	A:A:91	99.99	No	Yes	0
76	A:A:93	A:A:94	83.91	No	No	0
77	A:A:10	A:A:9	11.1	No	Yes	0
78	A:A:13	A:A:83	40.01	Yes	No	0
79	A:A:23	A:A:36	27.05	No	Yes	0
80	A:A:30	A:A:33	30.16	No	No	0
81	A:A:91	A:A:92	20.33	Yes	No	0
82	A:A:49	A:A:50	24.27	No	No	0
83	A:A:81	A:A:82	0.77	No	No	0
84	A:A:61	A:A:63	0	Yes	No	0
85	A:A:42	A:A:44	0	Yes	No	0
86	A:A:54	A:A:55	0.09	No	No	0
87	A:A:18	A:A:19	0	No	No	0
88	A:A:74	A:A:75	1.51	No	No	0
89	A:A:60	A:A:61	0.09	No	Yes	0
90	A:A:69	A:A:70	0.03	No	No	0
91	A:A:67	A:A:68	0.22	No	No	0
92	A:A:21	A:A:39	0	No	No	0
93	A:A:12	A:A:13	0	No	Yes	0
94	A:A:60	A:A:88	0.04	No	No	0
95	A:A:46	A:A:47	0	No	No	0
96	A:A:34	A:A:36	17.83	No	Yes	0
97	A:A:11	A:A:18	9.05	No	No	0
98	A:A:25	A:A:35	0	No	No	0
99	A:A:45	A:A:48	0	No	No	0
100	A:A:53	A:A:94	16.4	Yes	No	0

Index: link id, click on each number to highlight the corresponding link in the 3D visualization.

Node1 Node2: the two nodes of the corresponding link.

Freq: the trajectory frequency of this link.

Hub1?, Hub2?: "Yes" if the corresponding node has more than 3 links, otherwise "No".

Community: the id of the community the link belong to, otherwise 0.

Value1, Value2: these columns report the values present in the user submitted external values file (if any).

Color	Trajectory Frequency
	0 < Freq. ≤ 10
	10 < Freq. ≤ 20
	20 < Freq. ≤ 30
	30 < Freq. ≤ 40
	40 < Freq. ≤ 50
	50 < Freq. ≤ 60
	60 < Freq. ≤ 70
	70 < Freq. ≤ 80
	80 < Freq. ≤ 90
	90 < Freq. ≤ 100

Index	Hub	Freq	Num Of Links	Community
1	A:A:7	74.55	4	0
2	A:A:9	50	4	1
3	A:A:13	67.61	4	0
4	A:A:36	83.12	5	0
5	A:A:42	82.67	4	0
6	A:A:53	50	4	0
7	A:A:61	97.36	4	0
8	A:A:76	38.9	4	3
9	A:A:86	49.8	4	1
10	A:A:91	96.44	5	0

Index: hub id, click on each number to highlight the corresponding hub in the 3D visualization.

Hub: the hub being considered.

Freq: the trajectory frequency of the corresponding hub.

Num Of Links: the number of links of the corresponding hub.

Community: the id of the community the link belong to, otherwise 0.

Value: this column reports the value present in the user submitted external values file (if any).

Color	Relative Recurrence (%)
	0 < rr ≤ 10
	10 < rr ≤ 20
	20 < rr ≤ 30
	30 < rr ≤ 40
	40 < rr ≤ 50
	50 < rr ≤ 60
	60 < rr ≤ 70
	70 < rr ≤ 80
	80 < rr ≤ 90
	90 < rr ≤ 100

Index	Node1	Node2	Recurrency	Freq	Hub1?	Hub2?	Community
1	A:A:7	A:A:91	88.2948	78.42	Yes	Yes	0
2	A:A:7	A:A:8	88.6802	67.53	Yes	No	0
3	A:A:8	A:A:9	22.736	99.86	No	Yes	1
4	A:A:8	A:A:86	63.3911	87.6	No	Yes	1
5	A:A:10	A:A:9	21.3391	11.1	No	Yes	0
6	A:A:85	A:A:86	63.8247	77.98	No	Yes	0
7	A:A:84	A:A:85	60.5491	100	No	No	0
8	A:A:83	A:A:84	57.1773	92.1	No	No	0
9	A:A:13	A:A:83	53.6127	40.01	Yes	No	0
10	A:A:90	A:A:91	100	99.99	No	Yes	0
11	A:A:57	A:A:90	97.1098	59.56	No	No	0
12	A:A:57	A:A:58	92.8709	100	No	No	2
13	A:A:35	A:A:58	91.0405	89.13	No	No	0
14	A:A:35	A:A:36	87.7649	100	No	Yes	0
15	A:A:23	A:A:36	46.869	27.05	No	Yes	0
16	A:A:22	A:A:23	39.9326	100	No	No	0
17	A:A:31	A:A:36	35.4528	53.53	No	Yes	0
18	A:A:30	A:A:31	27.9865	99.97	No	No	0
19	A:A:29	A:A:30	20.183	100	No	No	0
20	A:A:7	A:A:89	74.422	99.98	Yes	No	0
21	A:A:52	A:A:89	50.4817	57.65	No	No	0
22	A:A:51	A:A:52	59.4412	100	No	No	0
23	A:A:49	A:A:51	53.9981	100	No	No	0
24	A:A:48	A:A:49	45.183	86.98	No	No	0
25	A:A:47	A:A:48	35.8863	97.18	No	No	0
26	A:A:42	A:A:47	24.2293	89.55	Yes	No	0
27	A:A:56	A:A:91	34.9229	94.54	No	Yes	0
28	A:A:53	A:A:56	32.8516	74.84	Yes	No	0
29	A:A:52	A:A:53	31.1657	67.55	No	Yes	0
30	A:A:88	A:A:89	37.9576	99.96	No	No	0
31	A:A:60	A:A:88	34.0559	0.04	No	No	0
32	A:A:60	A:A:61	31.6474	0.09	No	Yes	0
33	A:A:61	A:A:64	20.8092	99.71	Yes	No	0
34	A:A:22	A:A:71	23.2659	56.64	No	No	0
35	A:A:13	A:A:81	36.4162	98.37	Yes	No	0
36	A:A:80	A:A:81	29.9133	100	No	No	0

Index: link id, click on each number to highlight the corresponding link in the 3D visualization.

Node1 Node2: the two nodes of the corresponding link.

Recurrency: the relative recurrency in the filtered pool of shortest paths.

Freq: the trajectory frequency of this link.

Hub1?, Hub2?: "Yes" if the corresponding node has more than 3 links, otherwise "No".

Community: the id of the community the link belong to, otherwise 0.

Value1, Value2: these columns report the values present in the user submitted external values file (if any).

Color	Relative Recurrence (%)
	0 < rr ≤ 10
	10 < rr ≤ 20
	20 < rr ≤ 30
	30 < rr ≤ 40
	40 < rr ≤ 50
	50 < rr ≤ 60
	60 < rr ≤ 70
	70 < rr ≤ 80
	80 < rr ≤ 90
	9 < rr ≤ 10

Here, those paths that begin and end at given residue pair(s) or that pass through a residue are used to generate a novel metapath. Such a path filtering is particularly recommended if some information on allosteric residues is available. The selection syntax for a residue pair ("Pairs") is C:C:c534,A:A:?600 (the lower-case "c" stands for cytosine and "?" indicates any non standard amino acid or nucleotide residue). Selection of more than one apical residue pair has the following syntax: C:C:c534,A:A:?600,C:C:c534,A:A:E41. Only one residue can be selected as a tail ("Tail"). For midway residue(s), each residue must be separated by a comma as well e.g. A:A:?600,A:A:E41.

Index	Node1	Node2	Recurrency	Freq	Hub1?	Hub2?	Community	Value1	Value2

Index: link id, click on each number to highlight the corresponding link in the 3D visualization.

Node1 Node2: the two nodes of the corresponding link.

Recurrency: the relative recurrency in the filtered pool of shortest paths.

Freq: the trajectory frequency of this link.

Hub1?, Hub2?: "Yes" if the corresponding node has more than 3 links, otherwise "No".

Community: the id of the community the link belong to, otherwise 0.

Value1, Value2: these columns report the values present in the user submitted external values file (if any).

Download PSN data

Trj Stats Plots:

Stat 1	Stat 2	Documentation

2D representation of the global metapath and histograms of path distribution according to several parameters:

2D representation of the user filetered metapath and histograms of path distribution according to several parameters:

Net Summary
I_min	4.56612
Number of Linked Nodes	94
Number of Links	100
Number of Hubs	10
Number of Links mediated by Hubs	40
Number of Communities	3
Number of Nodes involved in Communities	10
Number of Links involved in Communities	11

Path Summary
Number Of Nodes in MetaPath	37
Number Of Links MetaPath	36
Number of Shortest Paths	4490
Length Of Smallest Path	3
Average Path Length	11.4973
Length of Longest Path	24
Minimum Path Force	3.115
Average Path Force	6.54774
Maximum Path Force	10.685
Minimum Path Correlation	0.805
Average Path Correlation	0.889069
Maximum Path Correlation	0.943
Minimum % Of Corr. Nodes	5
Average % Of Corr. Nodes	23.5995
Maximum % Of Corr. Nodes	100
Minimum Path Hubs %	0
Average Path Hubs %	25.2387
Maximum Path Hubs %	75

Filtered Path Summary
Number Of Nodes in MetaPath	available after path filtering
Number Of Links MetaPath	available after path filtering
Number of Shortest Paths	available after path filtering
Length Of Smallest Path	available after path filtering
Average Path Length	available after path filtering
Length of Longest Path	available after path filtering
Minimum Path Force	available after path filtering
Average Path Force	available after path filtering
Maximum Path Force	available after path filtering
Minimum Path Correlation	available after path filtering
Average Path Correlation	available after path filtering
Maximum Path Correlation	available after path filtering
Minimum % Of Corr. Nodes	available after path filtering
Average % Of Corr. Nodes	available after path filtering
Maximum % Of Corr. Nodes	available after path filtering
Minimum Path Hubs %	available after path filtering
Average Path Hubs %	available after path filtering
Maximum Path Hubs %	available after path filtering

Details about the values in these tables can be found in the corresponding documentation page .

You can download a compressed (zip) file with all submitted structures, 3D outputs (as PyMol and VMD scripts) and numerical data files (as csv and plain text files). The zip bundle also contains an output manual explaining the meaning of all files and numerical data.

Download webpsn_output_jobb95q_z5l.zip