Orange: nodes, hubs and links specific of 5ht1_off network

Green: nodes, hubs and links shared by both networks

Purple: nodes, hubs and links specific of 5ht1_on network

Index: hub id, click on each number to highlight the corresponding hub in the 3D visualization.

Hub: the hub being considered.

Owner: the name of the network the hub belong to or "Shared" if the corresponding hub is present in both networks.

Avg Int. Strength: the average interaction strength of all the links of the corresponding hub in the corresponding network.

Num Of Links: the number of links of the corresponding hub in the corresponding network.

ConSurf: this column reports the ConSurf conservation grades of each hub.


Index Hub Owner 5ht1_off Avg Int. Strength 5ht1_on Avg Int. Strength 5ht1_off Num Of Links 5ht1_on Num Of Links ConSurf
1NT 5ht1_off17.62170.992612
21x52 5ht1_off4.54254.053417
32x56 5ht1_off6.97755.59467437
43x32 5ht1_off10.27259.85967438
53x40 5ht1_off6.234.85417438
63x49 5ht1_off7.7856.50667439
73x52 5ht1_off11.17512.9788425
84x50 5ht1_off6.2057.4825429
95x64 5ht1_off5.54751.842416
106x31 5ht1_off6.372.416416
116x41 5ht1_off3.77252.80383438
126x49 5ht1_off4.58754.26267436
136x58 5ht1_off5.2853.05125424
147x45 5ht1_off8.739.75617439
157x48 5ht1_off3.67253.39125426
162x50 Shared5.865.8914559
172x57 Shared7.48754.2316457
18E1x50 Shared8.414296.53358768
193x28 Shared7.766.797546
203x41 Shared8.095.73775546
213x42 Shared9.0226.42917567
223x51 Shared6.118.54663448
23I2x53 Shared11.2949.47688548
24E2 Shared9.834.977155104
255x47 Shared11.9548.74008568
265x48 Shared6.9564.67763546
275x58 Shared4.074.81175569
285x62 Shared4.36754.4259456
296x44 Shared6.4744.7631559
306x48 Shared8.051436.20589797
316x51 Shared9.2385.6016558
326x52 Shared13.9949.0637557
337x37 Shared6.25754.15788446
347x39 Shared9.187146.294776
357x42 Shared6.355.80021777
367x52 Shared2.6943.42375548
378x50 Shared5.1156.31193478
38Lig Shared7.301547.3216713120
391x39 5ht1_on16.0456.46513246
401x60 5ht1_on6.664.34375247
41I1x50 5ht1_on7.1955.98637248
422x46 5ht1_on4.114.571259
433x43 5ht1_on3.556.37138348
44I2x57 5ht1_on10.84336.2408357
455x36 5ht1_on8.695.4485246
465x39 5ht1_on5.565.35413148
475x66 5ht1_on8.084.84675346
485x69 5ht1_on3.941.78975245
496x20 5ht1_on00.413375040
506x30 5ht1_on1.464.99063248
51E3 5ht1_on03.3407054
527x49 5ht1_on10.1758.41088249
537x53 5ht1_on11.7355.6877259
548x54 5ht1_on3.073.8523357
55I3 5ht1_on02.9145040
   
Orange: nodes, hubs and links specific of 5ht1_off network

Green: nodes, hubs and links shared by both networks

Purple: nodes, hubs and links specific of 5ht1_on network

Index: link id, click on each number to highlight the corresponding link in the 3D visualization.

Node1 Node2: the two nodes of the corresponding link.

Owner: the name of the network the link belong to or "Shared" if the corresponding link is present in both networks.

Recurrence: the relative Recurrence in the filtered pool of shortest paths.

Hub1?, Hub2?: "Yes" if the corresponding node has more than 3 links, otherwise "No".

ConSurf1, ConSurf2: these columns report the ConSurf conservation grades of the two nodes involved in a link.


Index Node1 Node2 Owner 5ht1_off Recurrence 5ht1_on Recurrence 5ht1_off Hub1? 5ht1_on Hub1? 5ht1_off Hub2? 5ht1_on Hub2? ConSurf1 ConSurf2
11x29 1x32 5ht1_off10.81520NoNoNoNo33
21x36 2x65 5ht1_off25.07931.20606NoNoNoNo66
31x36 2x61 5ht1_off26.31290NoNoNoNo67
42x61 7x39 5ht1_off27.47091.214NoNoYesYes76
52x57 7x39 5ht1_off16.34860.591129YesYesYesYes76
61x46 2x57 5ht1_off13.76060NoNoYesYes77
71x50 2x50 5ht1_off14.37499.8548NoNoYesYes99
87x53 8x50 5ht1_off30.15960NoYesYesYes98
92x43 7x53 5ht1_off31.37810NoNoNoYes89
102x40 2x43 5ht1_off32.84330NoNoNoNo98
112x37 2x39 5ht1_off38.50260NoNoNoNo88
122x39 3x50 5ht1_off39.66570NoNoNoNo89
133x49 3x50 5ht1_off42.440YesNoNoNo99
143x49 I2x53 5ht1_off45.77823.41982YesNoYesYes98
153x51 3x52 5ht1_off68.11840YesYesYesNo85
163x40 Lig 5ht1_off73.44540YesNoYesYes80
177x54 8x50 5ht1_off15.13523.92367NoNoYesYes78
187x54 8x54 5ht1_off10.63890.0912481NoNoNoYes77
193x38 4x53 5ht1_off22.3050NoNoNoNo88
203x37 4x53 5ht1_off27.18394.5386NoNoNoNo78
213x42 4x50 5ht1_off13.49380YesYesYesNo79
223x38 4x50 5ht1_off12.73351.77339NoNoYesNo89
233x40 6x44 5ht1_off27.08329.32318YesNoYesYes89
246x44 7x45 5ht1_off11.84230YesYesYesNo99
256x48 7x42 5ht1_off15.8250YesYesYesYes77
262x60 3x28 5ht1_off26.15680NoNoYesYes66
27E1x50 E1x52 5ht1_off11.45967.53392YesYesNoNo86
282x63 E1x50 5ht1_off25.45197.62517NoNoYesYes68
292x63 E2 5ht1_off21.66564.97897NoNoYesYes64
303x30 4x61 5ht1_off15.93071.52741NoNoNoNo77
313x30 4x57 5ht1_off18.2676.07395NoNoNoNo77
323x34 4x57 5ht1_off20.58813.08657NoNoNoNo67
333x34 4x53 5ht1_off29.77193.08657NoNoNoNo68
343x40 5x47 5ht1_off11.58550YesNoYesYes88
353x44 5x54 5ht1_off27.4760NoNoNoNo78
364x63 E2 5ht1_off14.87840NoNoYesYes64
374x63 5x36 5ht1_off11.46973.59042NoNoNoYes66
385x54 6x41 5ht1_off25.99570NoNoYesNo88
395x58 6x41 5ht1_off19.94867.45457YesYesYesNo98
405x58 5x62 5ht1_off13.99730YesYesYesYes96
413x43 6x40 5ht1_off14.25910NoYesNoNo88
426x51 Lig 5ht1_off17.73834.47512YesYesYesYes80
436x54 7x34 5ht1_off15.13021.26954NoNoNoNo44
446x51 7x34 5ht1_off29.85250YesYesNoNo84
456x58 7x34 5ht1_off13.13130YesNoNoNo44
466x40 7x52 5ht1_off10.62380NoNoYesYes88
472x60 7x42 5ht1_off23.32711.20606NoNoYesYes67
481x32 2x65 Shared20.809610.8347NoNoNoNo36
492x37 2x40 Shared37.102942.6049NoNoNoNo89
503x52 I2x53 Shared63.189261.5369YesNoYesYes58
513x51 5x57 Shared79.794618.0473YesYesNoNo86
525x53 5x57 Shared81.924475.7002NoNoNoNo76
533x44 5x53 Shared82.941476.462NoNoNoNo77
543x41 3x44 Shared10077.2157YesYesNoNo67
553x41 5x50 Shared88.751853.3405YesYesNoNo69
563x40 5x50 Shared90.196955.7328YesNoNoNo89
577x42 Lig Shared64.679542.4026YesYesYesYes70
587x39 7x42 Shared36.846114.8853YesYesYesYes67
592x38 I2x57 Shared14.274251.5473NoNoNoYes67
60I2x53 I2x57 Shared14.183653.7689YesYesNoYes87
613x37 Lig Shared29.540311.656NoNoYesYes70
623x42 4x49 Shared22.481228.7908YesYesNoNo77
633x41 4x49 Shared25.75929.3144YesYesNoNo67
643x43 6x44 Shared21.590166.1192NoYesYesYes89
657x45 7x49 Shared10.513113.4492YesNoNoYes99
662x56 7x42 Shared25.884914.7544YesNoYesYes77
673x28 E1x50 Shared54.810927.5609YesYesYesYes68
682x56 3x28 Shared42.998823.7761YesNoYesYes76
692x56 3x32 Shared19.4311.1164YesNoYesNo78
703x32 Lig Shared19.983911.9257YesNoYesYes80
712x54 2x57 5ht1_on015.4685NoNoYesYes77
721x46 2x54 5ht1_on6.8576612.4375NoNoNoNo77
731x46 7x47 5ht1_on6.8073110.9101NoNoNoNo76
746x48 Lig 5ht1_on3.1368100YesYesYesYes70
756x48 7x45 5ht1_on9.1888613.83YesYesYesNo79
763x40 6x48 5ht1_on047.2705YesNoYesYes87
773x48 5x57 5ht1_on063.3222NoNoNoNo66
783x48 3x52 5ht1_on1.6464462.4335NoNoYesNo65
792x37 2x38 5ht1_on043.6602NoNoNoNo86
802x40 8x50 5ht1_on031.8813NoNoYesYes98
818x50 8x54 5ht1_on010.2039YesYesNoYes87
826x44 6x48 5ht1_on054.0506YesYesYesYes97
832x46 3x42 5ht1_on036.4001NoYesYesYes97
842x46 3x46 5ht1_on024.9226NoYesNoNo99
853x43 7x53 5ht1_on063.9451NoYesNoYes89
865x43 Lig 5ht1_on1.5155341.6528NoNoYesYes70
875x39 5x43 5ht1_on040.4467NoYesNoNo87
885x36 5x39 5ht1_on035.8605NoYesNoYes68
895x36 E2 5ht1_on030.6594NoYesYesYes64
90E1x49 E2 5ht1_on019.0074NoNoYesYes34
913x28 3x29 5ht1_on7.1597610.4539YesYesNoNo66
92E2x52 Lig 5ht1_on1.3191712.1082NoNoYesYes60
933x29 E2x52 5ht1_on011.16NoNoNoNo66
943x33 Lig 5ht1_on1.5155311.4139NoNoYesYes60
953x33 4x57 5ht1_on010.3467NoNoNoNo67
963x50 7x53 5ht1_on027.2316NoNoNoYes99
973x50 5x58 5ht1_on046.4255NoNoYesYes99
986x40 7x53 5ht1_on028.6519NoNoNoYes89
995x58 6x40 5ht1_on027.0412YesYesNoNo98
1005x47 5x48 5ht1_on3.9524712.6795YesYesYesYes86
1015x45 5x48 5ht1_on7.6078710.6998NoNoYesYes36
1025x58 6x37 5ht1_on063.0524YesYesNoNo98
1035x62 6x37 5ht1_on059.8151YesYesNoNo68
1045x62 5x66 5ht1_on4.6120516.1985YesYesNoYes66
1055x66 5x70 5ht1_on011.045NoYesNoNo60
1065x62 6x30 5ht1_on037.4593YesYesNoYes68
1075x70 6x30 5ht1_on010.9577NoNoNoYes08
1086x51 6x54 5ht1_on014.2863YesYesNoNo84
1096x54 7x37 5ht1_on6.8123511.4616NoNoYesYes46
1107x52 7x53 5ht1_on015.1115YesYesNoYes89
1118x47 8x50 5ht1_on8.1214411.648NoNoYesYes98
1128x47 8x48 5ht1_on010.5887NoNoNoNo96
1135x69 6x30 5ht1_on025.8034NoYesNoYes58
1145x67 5x70 5ht1_on018.7693NoNoNoNo50
1155x67 5x68 5ht1_on012.3066NoNoNoNo57
1165x69 6x29 5ht1_on019.4041NoYesNoNo57
1176x25 6x29 5ht1_on017.6149NoNoNoNo07
1182x66 E1x49 5ht1_on016.4286NoNoNoNo53
1192x65 2x66 5ht1_on013.4849NoNoNoNo65
1206x22 6x25 5ht1_on016.1469NoNoNoNo00
1216x18 6x22 5ht1_on014.679NoNoNoNo00
1226x15 6x18 5ht1_on013.2111NoNoNoNo00
1236x15 6x16 5ht1_on010.2753NoNoNoNo00
1242x57 7x42 5ht1_on018.9915YesYesYesYes77
1253x46 3x50 5ht1_on020.0111NoNoNoNo99
1265x47 6x44 5ht1_on010.0095YesYesYesYes89
1276x48 6x51 5ht1_on8.3278810.2714YesYesYesYes78

Here, those paths that begin and end at given residue pair(s) or that pass through a residue are used to generate a novel metapath. Such a path filtering is particularly recommended if some information on allosteric residues is available. The selection syntax for a residue pair ("Pairs") is C:C:c534,A:A:?600 (the lower-case "c" stands for cytosine and "?" indicates any non standard amino acid or nucleotide residue). Selection of more than one apical residue pair has the following syntax: C:C:c534,A:A:?600,C:C:c534,A:A:E41. Only one residue can be selected as a tail ("Tail"). For midway residue(s), each residue must be separated by a comma as well e.g. A:A:?600,A:A:E41.

Midway



Download PSN data

2D representation of the global metapath, ligand(s) interactions and
histograms of path distribution according to several parameters
(click on the image to enlarge it 🔍):

A 2D representation of the global communication in the network.

Number of shortest communication paths as a function of the average residue correlation.

Number of shortest communication paths as a function of the average interaction strength of their links.

Number of shortest communication paths as a function of the % of hub nodes in each path.

Number of shortest communication paths as a function of the number of nodes in each path.

Number of shortest communication paths as a function of the % of correlated nodes in each path.


2D representation of the interactions of this orthosteric/allosteric ligand.


Node1Node2OwnerNet1LinkStrengthNet2LinkStrengthComm1Comm2Node1ShellNode2Shell
2x563x32Shared13.157.741121
2x567x42Shared5.054.3541121
2x577x39Shared5.824.7110122
2x607x39Shared8.655.44951122
2x607x42Shared6.364.80351121
3x323x365ht1_off4.6701111
3x327x42Shared11.4910.1141111
3x32LigShared11.7811.7251110
3x33LigShared4.779.58350010
3x366x48Shared3.925.2881111
3x36LigShared5.39.4551110
3x374x53Shared6.45.1170012
3x375x4615ht1_off5.0300011
3x37LigShared4.923.54850010
3x405x475ht1_off3.7700112
3x405x50Shared5.083.3050112
3x406x44Shared11.34.270112
3x40Lig5ht1_off4.7700110
E2x52LigShared3.985.32350010
5x445x48Shared6.243.99650112
5x44Lig5ht1_off3.9400110
5x475x48Shared11.355.8791122
5x476x52Shared33.2221.1111121
5x486x525ht1_off6.1901121
5x486x56Shared4.695.09951122
6x447x455ht1_off8.4600122
6x486x51Shared9.024.4091111
6x486x52Shared6.018.0671111
6x487x41Shared12.677.87751112
6x487x425ht1_off3.8601111
6x487x45Shared3.3910.171112
6x48LigShared17.494.1321110
6x516x52Shared10.723.37851111
6x517x345ht1_off3.2201112
6x517x38Shared7.784.531112
6x51LigShared15.4512.71251110
6x52LigShared13.839.51751110
6x547x34Shared5.022.9480022
7x387x42Shared6.243.71150021
7x397x42Shared6.756.70351121
7x42LigShared4.75.9111110
5x43LigShared3.015.1530010
6x556x565ht1_off300012
5x40Lig5ht1_off0.9800010
2x577x425ht1_on05.0040121
3x29E2x525ht1_on03.6210021
3x334x575ht1_on05.8290012
3x374x565ht1_on04.940012
3x406x485ht1_on06.98750111
5x395x435ht1_on03.6880221
5x446x525ht1_on03.24450111
5x446x565ht1_on05.1590112
5x461Lig5ht1_on03.2590010
5x476x445ht1_on07.0741122
5x476x485ht1_on03.2581121
6x446x485ht1_on05.6640121
6x55Lig5ht1_on07.53950010
6x516x545ht1_on02.9781112
5x406x595ht1_on02.9720012

Location and physicochemical properties of the interaction partners of this ligand

Interactions of this ligand

Difference Members
Id Description
5ht1_off 5ht1b_off
5ht1_on 5ht1a_on
5ht1d_on
5ht1e_on
5ht1f_on
5ht1b_on
Network Difference
Value 5ht1_off 5ht1_on
Imin 3.17 3.1685
Number of Linked Nodes 241 278
Number of Specific Nodes 1 (0.41%) 38  (13.67%)
Number of Shared Nodes 240 (99.59%) 240  (86.33%)
Number of Links 282 320
Number of Specific Links 120 (42.55%) 158  (49.38%)
Number of Shared Links 162 (57.45%) 162  (50.63%)
Number of Hubs 38 40
Number of Specific Hubs 15 (39.47%) 17  (42.50%)
Number of Shared Hubs 23 (60.53%) 23  (57.50%)
Average % Shared Neighbours (Jaccard) 36.72
Average % Shared Neighbours (Otsuka) 45.46
Average % Shared Neighbours (Overlap Coefficient) 53.88
Average % Shared Cliques (k3-6) 82.74
Graphlets Similarity 0.660714
Paths Difference
Value 5ht1_off 5ht1_on
Number Of Nodes in MetaPath 69 76
Specific Nodes in MetaPath 23 (33.33%) 30  (39.47%)
Shared Nodes in MetaPath 240 (99.59%) 240  (99.59%)
Number Of Links MetaPath 70 80
Specific Links in MetaPath 47 (67.14%) 57  (71.25%)
Shared Links in MetaPath 162 (57.45%) 162  (57.45%)
Number of Shortest Paths 46796 58164
Length Of Smallest Path 3 3
Average Path Length 13.3492 14.3669
Length of Longest Path 37 38
Minimum Path Strength 1.435 0.60485
Average Path Strength 6.43206 5.23811
Maximum Path Strength 23.525 15.3142
Minimum Path Correlation 0.7 0.7015
Average Path Correlation 0.927279 0.909264
Maximum Path Correlation 0.99 0.99
Minimum % Of Corr. Nodes 3.44828 2.85714
Average % Of Corr. Nodes 50.0727 38.7386
Maximum % Of Corr. Nodes 100 100
Minimum Path Hubs % 0 0
Average Path Hubs % 44.7763 45.4242
Maximum Path Hubs % 100 100

Details about the values in these tables can be found in the corresponding documentation page .

You can download a compressed (zip) file with structure(s), 3D outputs (as PyMol and VMD scripts) and numerical data files (as csv and plain text files).

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