Orange: nodes, hubs and links specific of 5ht_off network

Green: nodes, hubs and links shared by both networks

Purple: nodes, hubs and links specific of 5ht_on network

Index: hub id, click on each number to highlight the corresponding hub in the 3D visualization.

Hub: the hub being considered.

Owner: the name of the network the hub belong to or "Shared" if the corresponding hub is present in both networks.

Avg Int. Strength: the average interaction strength of all the links of the corresponding hub in the corresponding network.

Num Of Links: the number of links of the corresponding hub in the corresponding network.

ConSurf: this column reports the ConSurf conservation grades of each hub.


Index Hub Owner 5ht_off Avg Int. Strength 5ht_on Avg Int. Strength 5ht_off Num Of Links 5ht_on Num Of Links ConSurf
11x49 5ht_off33.33330428
2I1x50 5ht_off22.222210438
32x41 5ht_off011.1111434
42x60 5ht_off00427
5E1x52 5ht_off00435
63x50 5ht_off33.33330429
74x38 5ht_off011.1111537
84x52 5ht_off00435
94x57 5ht_off00437
105x36 5ht_off00625
116x31 5ht_off00425
126x41 5ht_off29.62960428
136x55 5ht_off016.6667427
146x58 5ht_off016.6667424
157x45 5ht_off33.333316.6667439
168x57 5ht_off18.51850424
17CT 5ht_off12.9630515
18NT 5ht_off44.44440810
192x50 Shared88.888974.1667559
202x57 Shared1000548
21E1x50 Shared10071.6667677
223x42 Shared88.888950448
233x49 Shared66.66670549
243x51 Shared33.333349.4444548
25I2x53 Shared33.333346.6667547
264x50 Shared55.55560449
27E2 Shared10098.333313123
285x48 Shared33.33335.83333445
295x58 Shared050469
305x66 Shared00446
316x44 Shared98.148230549
326x48 Shared100100768
336x51 Shared10024.1667647
346x52 Shared98.148289.1667557
35E3 Shared33.333316.6667543
367x34 Shared016.6667443
377x37 Shared33.33336.66667445
387x39 Shared94.444555746
397x42 Shared100100757
407x49 Shared38.888940.8333459
418x50 Shared33.333391.6667478
42Lig Shared1001001390
431x50 5ht_on08.33333349
441x60 5ht_on5.555568.33333346
452x42 5ht_on33.333325348
462x46 5ht_on026.6667349
475x47 5ht_on33.333381.9444358
486x30 5ht_on00148
497x53 5ht_on078.3333259
507x56 5ht_on00347
   
Orange: nodes, hubs and links specific of 5ht_off network

Green: nodes, hubs and links shared by both networks

Purple: nodes, hubs and links specific of 5ht_on network

Index: link id, click on each number to highlight the corresponding link in the 3D visualization.

Node1 Node2: the two nodes of the corresponding link.

Owner: the name of the network the link belong to or "Shared" if the corresponding link is present in both networks.

Recurrence: the relative Recurrence in the filtered pool of shortest paths.

Hub1?, Hub2?: "Yes" if the corresponding node has more than 3 links, otherwise "No".

ConSurf1, ConSurf2: these columns report the ConSurf conservation grades of the two nodes involved in a link.


Index Node1 Node2 Owner 5ht_off Recurrence 5ht_on Recurrence 5ht_off Hub1? 5ht_on Hub1? 5ht_off Hub2? 5ht_on Hub2? ConSurf1 ConSurf2
11x46 2x57 5ht_off28.83850NoNoYesYes78
21x46 2x54 5ht_off19.17560NoNoNoNo76
32x56 7x42 5ht_off39.7510.118779NoNoYesYes87
42x53 2x56 5ht_off40.3710NoNoNoNo78
51x50 7x50 5ht_off41.06853.88012NoYesNoNo99
61x49 7x50 5ht_off39.88182.59183YesNoNoNo89
71x49 7x54 5ht_off36.2540YesNoNoNo87
87x54 8x54 5ht_off34.91230NoNoNoNo76
91x52 8x54 5ht_off33.90971.28221NoNoNoNo66
101x52 1x56 5ht_off28.35420NoNoNoNo67
111x56 8x50 5ht_off26.96410NoNoYesYes78
128x50 I1x50 5ht_off20.04757.88816YesYesYesNo88
132x46 2x50 5ht_off28.5142.8172NoYesYesYes99
142x45 3x42 5ht_off63.33912.76238NoNoYesYes98
152x45 4x46 5ht_off62.23971.39185NoNoNoNo98
162x41 4x46 5ht_off11.38230YesNoNoNo48
177x42 Lig 5ht_off77.40480YesYesYesYes70
186x48 Lig 5ht_off63.46020YesYesYesYes80
192x42 4x46 5ht_off50.83310NoYesNoNo88
201x47 2x54 5ht_off17.08322.46086NoNoNoNo56
211x47 2x55 5ht_off10.74780NoNoNoNo54
222x63 E1x50 5ht_off30.80984.28824NoNoYesYes57
23E1x50 E1x52 5ht_off40.00294.91259YesYesYesNo75
243x25 E1x50 5ht_off30.70332.45782NoNoYesYes97
252x63 E2 5ht_off29.09040NoNoYesYes53
263x25 E2 5ht_off29.09040NoNoYesYes93
273x40 6x44 5ht_off55.40540NoNoYesYes89
283x40 5x50 5ht_off54.2430NoNoNoNo89
293x41 5x50 5ht_off51.8895.53999NoNoNoNo69
303x41 3x44 5ht_off43.3450NoNoNoNo66
313x44 5x54 5ht_off40.81660NoNoNoNo68
325x54 6x41 5ht_off39.53790NoNoYesNo88
333x49 I2x53 5ht_off30.47566.27703YesYesYesYes97
343x52 I2x53 5ht_off24.75543.67607NoNoYesYes57
353x51 3x52 5ht_off20.97740YesYesNoNo85
365x58 6x41 5ht_off30.12693.41719YesYesYesNo98
375x58 5x62 5ht_off24.60040YesYesNoNo95
385x36 E2 5ht_off23.97073.31668YesNoYesYes53
395x36 5x39 5ht_off10.73330YesNoNoNo57
405x44 5x48 5ht_off12.73371.77864NoNoYesYes65
415x45 5x48 5ht_off12.48672.11366NoNoYesYes45
426x40 7x49 5ht_off11.89090NoNoYesYes89
436x40 7x52 5ht_off10.43790NoNoNoNo88
446x51 Lig 5ht_off10.90772.36645YesYesYesYes70
456x54 7x34 5ht_off26.37319.99574NoNoYesYes53
466x54 7x37 5ht_off23.81588.92977NoNoYesYes55
476x55 Lig 5ht_off12.45289.66681YesNoYesYes70
486x55 7x34 5ht_off10.60740YesNoYesYes73
496x58 7x34 5ht_off15.17970.794908YesNoYesYes43
507x33 7x37 5ht_off10.88835.69836NoNoYesYes45
515x66 6x31 5ht_off12.86930YesYesYesNo65
522x67 NT 5ht_off26.11640NoNoYesNo50
532x66 2x67 5ht_off27.93282.8903NoNoNoNo45
542x66 E1x51 5ht_off29.70070NoNoNoNo43
552x62 E1x51 5ht_off31.49760NoNoNoNo43
562x62 E1x52 5ht_off33.19770NoNoYesNo45
573x49 4x38 5ht_off10.79140YesYesYesNo97
581x60 I1x50 5ht_off10.60746.66687NoYesYesNo68
592x60 7x42 5ht_off93.5920YesNoYesYes77
606x44 7x45 5ht_off22.52250YesYesYesNo99
616x48 6x51 5ht_off14.54520YesYesYesYes87
622x53 7x46 Shared39.378135.7708NoNoNoNo79
632x50 7x46 Shared39.000336.8825YesYesNoNo99
641x50 2x50 Shared46.856518.8646NoYesYesYes99
652x46 3x42 Shared72.004322.7508NoYesYesYes98
666x48 7x45 Shared53.066100YesYesYesNo89
677x45 7x49 Shared74.450397.3077YesNoYesYes99
682x46 7x49 Shared45.07919.5742NoYesYesYes99
692x60 3x28 Shared10024.8767YesNoNoNo75
703x28 E1x50 Shared97.70920.695NoNoYesYes57
716x44 6x48 Shared35.546867.8595YesYesYesYes98
722x42 3x49 Shared47.287613.821NoYesYesYes89
735x62 5x66 Shared23.195829.7009NoNoYesYes56
746x51 7x34 Shared32.209615.4048YesYesYesYes73
752x57 7x42 Shared36.90312.2556YesYesYesYes87
762x50 7x49 Shared23.873952.0284YesYesYesYes99
776x48 6x52 Shared10.205475.6898YesYesYesYes87
781x39 7x39 5ht_on1.3077633.6876NoNoYesYes66
797x39 7x42 5ht_on6.4177167.5489YesYesYesYes67
803x32 7x42 5ht_on0.48435551.3523NoNoYesYes87
813x32 Lig 5ht_on2.2377254.0933NoNoYesYes80
823x36 Lig 5ht_on0.83309143.4793NoNoYesYes70
833x36 6x48 5ht_on0.83793543.7991NoNoYesYes78
846x52 Lig 5ht_on2.9933262.6272YesYesYesYes70
857x38 7x42 5ht_on9.507929.6309NoNoYesYes67
866x51 7x38 5ht_on9.6289830.505YesYesNoNo76
876x51 6x52 5ht_on1.7049340.8601YesYesYesYes77
882x53 3x35 5ht_on034.6531NoNoNoNo77
892x52 3x35 5ht_on2.1650733.5293NoNoNoNo77
902x48 2x52 5ht_on032.3993NoNoNoNo67
911x54 2x48 5ht_on1.5208831.2633NoNoNoNo66
921x54 2x47 5ht_on3.0369130.1212NoNoNoNo69
931x53 2x47 5ht_on1.5208828.973NoNoNoNo99
941x53 7x54 5ht_on027.8187NoNoNoNo97
957x54 8x50 5ht_on026.6583NoNoYesYes78
967x49 7x53 5ht_on037.0957YesYesNoYes99
973x46 7x53 5ht_on032.1283NoNoNoYes99
982x42 3x46 5ht_on1.9471131.2694NoYesNoNo89
992x60 7x39 5ht_on8.5537126.6614YesNoYesYes76
1005x43 Lig 5ht_on1.5402530.377NoNoYesYes60
1015x39 5x43 5ht_on028.8421NoNoNoNo76
1025x39 E2 5ht_on024.2005NoNoYesYes73
1033x33 Lig 5ht_on9.7161717.954NoNoYesYes60
1043x33 4x57 5ht_on8.229216.352NoNoYesNo67
1053x42 4x49 5ht_on2.0052314.8748YesYesNoNo86
1063x41 4x49 5ht_on013.5408NoNoNoNo66
1075x54 6x44 5ht_on092.6479NoNoYesYes89
1083x47 5x54 5ht_on020.6828NoNoNoNo98
1095x47 6x52 5ht_on8.2049832.1709NoYesYesYes87
1105x47 6x44 5ht_on030.2887NoYesYesYes89
1115x54 5x58 5ht_on070.6676NoNoYesYes89
1123x47 5x57 5ht_on2.0052321.3437NoNoNoNo95
1133x51 5x57 5ht_on3.4098619.7021YesYesNoNo85
1145x58 6x37 5ht_on034.4704YesYesNoNo98
1155x58 6x40 5ht_on035.5424YesYesNoNo98
1165x62 6x37 5ht_on032.8562NoNoNoNo58
1176x40 7x56 5ht_on033.9739NoNoNoYes87
1186x36 7x56 5ht_on1.5111916.4738NoNoNoYes87
1195x66 6x30 5ht_on021.627YesYesNoYes68
1205x70 6x30 5ht_on014.0495NoNoNoYes08
1217x55 7x56 5ht_on1.5160310.8424NoNoNoYes57
1222x61 2x65 5ht_on024.7914NoNoNoNo65
1231x39 2x61 5ht_on031.9455NoNoNoNo66
1241x35 2x65 5ht_on020.5945NoNoNoNo35
1251x32 1x35 5ht_on5.7783615.755NoNoNoNo63
1266x32 6x36 5ht_on014.8444NoNoNoNo88
1276x29 6x32 5ht_on3.7634413.1662NoNoNoNo68
1286x25 6x29 5ht_on1.1043311.9693NoNoNoNo56
1296x22 6x25 5ht_on010.7724NoNoNoNo05

Here, those paths that begin and end at given residue pair(s) or that pass through a residue are used to generate a novel metapath. Such a path filtering is particularly recommended if some information on allosteric residues is available. The selection syntax for a residue pair ("Pairs") is C:C:c534,A:A:?600 (the lower-case "c" stands for cytosine and "?" indicates any non standard amino acid or nucleotide residue). Selection of more than one apical residue pair has the following syntax: C:C:c534,A:A:?600,C:C:c534,A:A:E41. Only one residue can be selected as a tail ("Tail"). For midway residue(s), each residue must be separated by a comma as well e.g. A:A:?600,A:A:E41.

Midway



Download PSN data

2D representation of the global metapath, ligand(s) interactions and
histograms of path distribution according to several parameters
(click on the image to enlarge it 🔍):

A 2D representation of the global communication in the network.

Number of shortest communication paths as a function of the average residue correlation.

Number of shortest communication paths as a function of the average interaction strength of their links.

Number of shortest communication paths as a function of the % of hub nodes in each path.

Number of shortest communication paths as a function of the number of nodes in each path.

Number of shortest communication paths as a function of the % of correlated nodes in each path.


2D representation of the interactions of this orthosteric/allosteric ligand.


Node1Node2OwnerNet1LinkStrengthNet2LinkStrengthComm1Comm2Node1ShellNode2Shell
2x563x32Shared10.14268.509721121
2x567x42Shared4.605563.900251121
2x577x395ht_off5.4068501022
2x577x42Shared5.010185.707191021
2x607x39Shared7.493893.057561022
2x607x425ht_off4.7144401021
3x29E2x52Shared3.581854.273640021
3x327x42Shared9.174829.204281111
3x32LigShared14.417411.39491110
3x334x57Shared4.37134.057610012
3x33LigShared5.8816711.49480010
3x366x48Shared3.802045.124671011
3x36LigShared6.521679.81321010
3x374x53Shared5.511114.755890012
3x375x461Shared4.973893.886830011
3x37Lig5ht_off4.0894400010
3x406x445ht_off7.9072200022
E2x52LigShared5.645373.624190010
5x43LigShared6.473894.602720010
5x445x48Shared4.403333.583861112
5x446x52Shared4.23134.870891111
5x44Lig5ht_off3.5757401110
5x475x48Shared8.657596.073030122
5x476x52Shared26.85220.84560121
5x486x56Shared4.999444.963250122
6x446x48Shared4.417415.036081121
6x447x455ht_off5.8651801122
6x486x515ht_off7.4446301011
6x486x52Shared6.514075.408391011
6x487x41Shared12.12176.998751012
6x487x45Shared4.2781510.20211012
6x48Lig5ht_off9.3531501010
6x516x52Shared9.627783.496691111
6x516x555ht_off7.0127801111
6x517x34Shared4.125193.190811112
6x517x38Shared6.24875.131111111
6x51LigShared12.0588.923471110
6x52LigShared11.11398.596811110
6x557x345ht_off3.8675901012
6x55LigShared5.137596.448111010
7x387x42Shared9.333158.023861011
7x38Lig5ht_off6.7857401010
7x397x42Shared8.591487.039471021
7x42Lig5ht_off3.9444401110
5x406x55Shared1.509071.929580021
3x406x485ht_on06.090140021
5x395x435ht_on06.041610321
5x446x565ht_on03.520531112
5x476x445ht_on04.305940122
5x461Lig5ht_on03.15650010
3x374x565ht_on03.098890012

Location and physicochemical properties of the interaction partners of this ligand

Interactions of this ligand

Difference Members
Id Description
5ht_off 5ht2_off
5ht5_off
5ht1_off
5ht_on 5ht1_on
5ht2_on
5ht4_on
5ht5_on
5ht6_on
5ht7_on
Network Difference
Value 5ht_off 5ht_on
Imin 3.52741 3.17156
Number of Linked Nodes 277 299
Number of Specific Nodes 2 (0.72%) 24  (8.03%)
Number of Shared Nodes 275 (99.28%) 275  (91.97%)
Number of Links 308 317
Number of Specific Links 139 (45.13%) 148  (46.69%)
Number of Shared Links 169 (54.87%) 169  (53.31%)
Number of Hubs 42 32
Number of Specific Hubs 18 (42.86%) 8  (25.00%)
Number of Shared Hubs 24 (57.14%) 24  (75.00%)
Average % Shared Neighbours (Jaccard) 40.47
Average % Shared Neighbours (Otsuka) 48.82
Average % Shared Neighbours (Overlap Coefficient) 57.05
Average % Shared Cliques (k3-6) 55.15
Graphlets Similarity 0.613939
Paths Difference
Value 5ht_off 5ht_on
Number Of Nodes in MetaPath 73 66
Specific Nodes in MetaPath 41 (56.16%) 34  (51.52%)
Shared Nodes in MetaPath 275 (99.28%) 275  (99.28%)
Number Of Links MetaPath 77 68
Specific Links in MetaPath 61 (79.22%) 52  (76.47%)
Shared Links in MetaPath 169 (54.87%) 169  (54.87%)
Number of Shortest Paths 52378 71702
Length Of Smallest Path 3 3
Average Path Length 14.2392 14.6783
Length of Longest Path 32 35
Minimum Path Strength 0.276481 0.309381
Average Path Strength 5.33098 5.07796
Maximum Path Strength 18.983 14.7212
Minimum Path Correlation 0.70037 0.700333
Average Path Correlation 0.907178 0.9012
Maximum Path Correlation 0.986481 0.985028
Minimum % Of Corr. Nodes 3.33333 3.33333
Average % Of Corr. Nodes 41.4379 36.6314
Maximum % Of Corr. Nodes 100 100
Minimum Path Hubs % 0 0
Average Path Hubs % 46.2231 42.8215
Maximum Path Hubs % 100 100

Details about the values in these tables can be found in the corresponding documentation page .

You can download a compressed (zip) file with structure(s), 3D outputs (as PyMol and VMD scripts) and numerical data files (as csv and plain text files).

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