Orange: nodes, hubs and links specific of a2_off network

Green: nodes, hubs and links shared by both networks

Purple: nodes, hubs and links specific of a2_on network

Index: hub id, click on each number to highlight the corresponding hub in the 3D visualization.

Hub: the hub being considered.

Owner: the name of the network the hub belong to or "Shared" if the corresponding hub is present in both networks.

Avg Int. Strength: the average interaction strength of all the links of the corresponding hub in the corresponding network.

Num Of Links: the number of links of the corresponding hub in the corresponding network.

ConSurf: this column reports the ConSurf conservation grades of each hub.


Index Hub Owner a2_off Avg Int. Strength a2_on Avg Int. Strength a2_off Num Of Links a2_on Num Of Links ConSurf
11x30 a2_off00414
21x42 a2_off00427
31x60 a2_off1000436
43x31 a2_off800435
53x41 a2_off100435
63x49 a2_off700439
73x50 a2_off700529
8I2x57 a2_off600527
9E2x52 a2_off025434
106x24 a2_off00513
116x52 a2_off6075436
126x60 a2_off700426
137x33 a2_off100414
147x56 a2_off200427
158x49 a2_off200426
168x54 a2_off00436
171x39 Shared10087.5566
181x50 Shared075449
19I1x50 Shared7087.5558
202x40 Shared4050448
212x42 Shared2025447
222x50 Shared30100459
232x57 Shared80100646
24E1x50 Shared700447
253x37 Shared10087.5545
26I2x53 Shared70100547
27E2 Shared10010017153
285x39 Shared100100766
295x40 Shared6087.5456
305x44 Shared5050445
315x461 Shared00445
326x44 Shared10075559
336x48 Shared90100558
346x59 Shared800443
35E3 Shared9037.5562
367x42 Shared6087.5576
377x49 Shared3087.5449
387x53 Shared9087.5569
398x50 Shared9087.5658
40Lig Shared10010011130
411x35 a2_on6087.5365
423x43 a2_on062.5248
434x56 a2_on1012.5354
444x61 a2_on00245
455x42 a2_on1050344
465x43 a2_on2062.5355
475x58 a2_on20100379
485x62 a2_on00345
496x30 a2_on00257
507x38 a2_on050244
518x53 a2_on050367
   
Orange: nodes, hubs and links specific of a2_off network

Green: nodes, hubs and links shared by both networks

Purple: nodes, hubs and links specific of a2_on network

Index: link id, click on each number to highlight the corresponding link in the 3D visualization.

Node1 Node2: the two nodes of the corresponding link.

Owner: the name of the network the link belong to or "Shared" if the corresponding link is present in both networks.

Recurrence: the relative Recurrence in the filtered pool of shortest paths.

Hub1?, Hub2?: "Yes" if the corresponding node has more than 3 links, otherwise "No".

ConSurf1, ConSurf2: these columns report the ConSurf conservation grades of the two nodes involved in a link.


Index Node1 Node2 Owner a2_off Recurrence a2_on Recurrence a2_off Hub1? a2_on Hub1? a2_off Hub2? a2_on Hub2? ConSurf1 ConSurf2
11x39 2x61 a2_off10.82499.34814YesYesNoNo66
23x39 6x44 a2_off1000NoNoYesYes99
32x50 3x39 a2_off55.00891.70515YesYesNoNo99
42x46 3x39 a2_off45.27550NoNoNoNo99
57x49 7x53 a2_off81.26970YesYesYesYes99
67x53 8x50 a2_off55.93290YesYesYesYes98
78x50 8x54 a2_off14.09070YesYesYesNo86
88x50 I1x50 a2_off11.34980.478558YesYesYesYes88
92x43 7x53 a2_off29.28620NoNoYesYes89
102x40 2x43 a2_off28.4990YesYesNoNo88
112x40 8x50 a2_off29.59937.21089YesYesYesYes88
123x49 I2x57 a2_off35.89940YesNoYesNo97
132x38 I2x57 a2_off23.01040NoNoYesNo67
142x39 3x50 a2_off10.45670NoNoYesNo89
155x42 5x461 a2_off10.3310NoYesYesYes45
163x37 5x461 a2_off10.63539.73377YesYesYesYes55
173x37 4x53 a2_off36.53225.84956YesYesNoNo57
183x38 4x53 a2_off36.10664.39994NoNoNoNo67
193x38 4x50 a2_off35.23562.94104NoNoNoNo69
202x45 4x50 a2_off33.48030NoNoNoNo99
213x40 6x44 a2_off39.39010.678344NoNoYesYes79
223x37 3x40 a2_off36.82330YesYesNoNo57
232x42 3x46 a2_off28.08660YesYesNoNo78
243x46 6x37 a2_off27.17590NoNoNoNo88
253x47 5x58 a2_off24.53641.95605NoNoNoYes99
263x47 5x57 a2_off23.6080NoNoNoNo97
275x57 5x61 a2_off22.67539.7059NoNoNoNo79
283x54 5x61 a2_off17.92763.47071NoNoNoNo89
292x38 4x39 a2_off19.22640NoNoNoNo61
306x40 7x49 a2_off13.25060NoNoYesYes89
316x40 7x52 a2_off15.760NoNoNoNo88
326x39 7x52 a2_off11.56145.35706NoNoNoNo68
336x39 7x56 a2_off10.49862.75055NoNoYesNo67
343x54 5x68 a2_off11.33210NoNoNoNo86
352x41 4x39 a2_off11.58790NoNoNoNo51
362x57 7x42 a2_off13.46235.7938YesYesYesYes66
371x39 7x42 Shared10.555914.9747YesYesYesYes66
386x48 Lig Shared49.4807100YesYesYesYes80
396x44 6x48 Shared70.610248.1624YesYesYesYes98
402x46 7x49 Shared45.143280.5882NoNoYesYes99
412x50 7x49 Shared50.111427.6077YesYesYesYes99
422x37 2x40 Shared57.158948.5155NoNoYesYes78
432x37 2x39 Shared55.346351.294NoNoNoNo78
442x39 3x49 Shared43.063852.6599NoNoYesNo89
45E2 Lig Shared24.741444.9194YesYesYesYes30
462x45 4x46 Shared31.707483.5571NoNoNoNo98
472x42 4x46 Shared30.814478.9295YesYesNoNo78
482x50 7x46 Shared10.637519.8996YesYesNoNo99
496x52 Lig Shared14.944114.8028YesNoYesYes60
505x58 6x37 Shared26.240954.2815NoYesNoNo98
517x41 7x42 Shared20.622320.2109NoNoYesYes76
526x48 7x41 Shared21.449221.9068YesYesNoNo87
531x38 7x39 a2_on018.4222NoNoNoNo55
541x35 7x39 a2_on012.3171NoYesNoNo55
551x39 7x39 a2_on1.1378412.2241YesYesNoNo65
561x35 7x35 a2_on3.9229127.6774NoYesNoNo53
571x35 7x38 a2_on016.8517NoYesNoYes54
581x35 7x42 a2_on027.7052NoYesYesYes56
597x38 Lig a2_on5.7730126.9015NoYesYesYes40
606x48 7x45 a2_on0.97686873.303YesYesNoNo89
617x45 7x49 a2_on072.7826NoNoYesYes99
621x46 7x46 a2_on0.71004910.1148NoNoNoNo79
637x42 Lig a2_on031.7614YesYesYesYes60
643x26 E2 a2_on0.82030520.8103NoNoYesYes63
653x26 4x61 a2_on018.766NoNoNoYes65
663x27 4x61 a2_on2.8203510.821NoNoNoYes45
671x50 2x50 a2_on4.9659311.7688YesYesYesYes99
682x46 3x42 a2_on085.8152NoNoNoNo97
692x45 3x42 a2_on1.0364184.6908NoNoNoNo97
702x42 3x49 a2_on066.631YesYesYesNo79
712x40 I1x50 a2_on0.87102334.182YesYesYesYes88
728x53 I1x50 a2_on2.066223.4215NoYesYesYes78
731x56 8x53 a2_on1.0518414.1569NoNoNoYes87
741x56 8x54 a2_on012.5401NoNoYesNo86
753x25 E2 a2_on6.3816213.1441NoNoYesYes93
763x25 E2x50 a2_on5.5855712.1266NoNoNoNo99
77E1x50 E2x50 a2_on3.790610.7838YesYesNoNo79
785x43 Lig a2_on019.3467NoYesYesYes50
795x43 5x461 a2_on017.1909NoYesYesYes55
803x43 6x44 a2_on7.6010513.4647NoYesYesYes89
815x54 6x44 a2_on033.6291NoNoYesYes89
823x43 7x53 a2_on028.0072NoYesYesYes89
835x44 6x52 a2_on6.6991612.2892YesYesYesNo56
845x54 5x58 a2_on047.7257NoNoNoYes89
853x49 I2x53 a2_on5.6561316.2756YesNoYesYes97
865x61 6x37 a2_on014.984NoNoNoNo98
87I2x53 I2x57 a2_on0.24476811.7688YesYesYesNo77
883x52 I2x57 a2_on9.6672510.1148NoNoYesNo57
892x42 4x42 a2_on013.4136YesYesNoNo77
904x39 4x42 a2_on011.7688NoNoNoNo17
914x38 4x39 a2_on5.812710.1148NoNoNoNo71
926x55 Lig a2_on5.3738816.559NoNoYesYes50
935x37 6x55 a2_on4.650617.2002NoNoNoNo45
945x37 6x59 a2_on8.7653515.7924NoNoYesYes43
955x51 6x44 a2_on010.598NoNoYesYes69
965x62 6x37 a2_on039.1906NoYesNoNo58
975x62 6x30 a2_on032.8625NoYesNoYes57
986x59 6x60 a2_on3.5612710.0637YesYesYesNo36
997x31 7x35 a2_on1.0672819.1284NoNoNoNo33
1006x26 6x30 a2_on5.1467512.2706NoNoNoYes57
1013x43 7x49 a2_on037.9408NoYesYesYes89
1023x43 5x54 a2_on015.2302NoYesNoNo88
1035x58 7x53 a2_on016.0247NoYesYesYes99

Here, those paths that begin and end at given residue pair(s) or that pass through a residue are used to generate a novel metapath. Such a path filtering is particularly recommended if some information on allosteric residues is available. The selection syntax for a residue pair ("Pairs") is C:C:c534,A:A:?600 (the lower-case "c" stands for cytosine and "?" indicates any non standard amino acid or nucleotide residue). Selection of more than one apical residue pair has the following syntax: C:C:c534,A:A:?600,C:C:c534,A:A:E41. Only one residue can be selected as a tail ("Tail"). For midway residue(s), each residue must be separated by a comma as well e.g. A:A:?600,A:A:E41.

Midway



Download PSN data

2D representation of the global metapath, ligand(s) interactions and
histograms of path distribution according to several parameters
(click on the image to enlarge it 🔍):

A 2D representation of the global communication in the network.

Number of shortest communication paths as a function of the average residue correlation.

Number of shortest communication paths as a function of the average interaction strength of their links.

Number of shortest communication paths as a function of the % of hub nodes in each path.

Number of shortest communication paths as a function of the number of nodes in each path.

Number of shortest communication paths as a function of the % of correlated nodes in each path.


2D representation of the interactions of this orthosteric/allosteric ligand.


Node1Node2OwnerNet1LinkStrengthNet2LinkStrengthComm1Comm2Node1ShellNode2Shell
1x351x39Shared14.92727.35750122
1x357x35Shared14.79514.21750121
1x392x57Shared7.5154.27254122
1x397x42Shared12.4338.461254121
2x577x42Shared9.1477.4554121
E1x51E2Shared13.870.808750021
3x22E2Shared15.17514.65750021
3x23E2Shared5.1571.488751021
3x25E2Shared4.14.27251121
3x26E2Shared13.8739.971250121
3x335x39Shared3.6353.518751122
3x335x40a2_off3.95801121
3x335x43Shared6.735.661251121
3x366x48a2_off8.94600011
3x406x44Shared6.0283.766250122
5x36E2Shared20.8746.89251121
5x38E2a2_off9.83101021
5x39E2Shared12.5097.01751121
5x42E2Shared5.2144.261121
E2E2Shared65.0718.411111
E2E2x51Shared13.04411.7851112
E2E2x52Shared13.55713.641111
5x40E2x52Shared5.5974.511251111
E2x52LigShared31.10343.23371110
5x37E2a2_off5.41401021
E2E3a2_off9.23401111
E2LigShared6.5497.053751110
5x365x38Shared4.4013.3351122
5x376x55Shared7.1494.908751021
5x395x40Shared3.833.141251121
5x395x42Shared9.5966.836251122
5x395x43Shared6.866.39751121
5x40LigShared5.1015.986251110
5x425x461a2_off3.76901122
5x436x52a2_off3.57301111
5x445x47Shared3.4064.91251122
5x446x52Shared24.8915.71121
5x476x52Shared6.5057.956251121
6x446x48Shared13.339.52251121
6x447x45a2_off8.33801122
6x487x41Shared11.9365.0951112
6x487x45Shared3.72911.44121112
6x48LigShared5.3336.07751110
6x51LigShared15.5557.996250010
6x52LigShared5.874.75751110
6x55LigShared10.5076.430110
6x58E3Shared9.9942.651250021
6x61E3Shared11.3413.84750321
7x34E3a2_off5.57901011
7x317x35Shared6.7994.690021
7x34LigShared4.674.116251010
7x35Liga2_off4.40600010
7x387x42Shared3.8474.311250111
7x38LigShared13.119.833750110
7x417x42Shared3.6233.48250021
E3Liga2_off4.68601310
6x547x34Shared3.3552.250021
2x563x32a2_off3.22100021
6x517x37Shared3.1512.84750012
2x607x42Shared2.932.378750021
3x29E2x52a2_off2.49300021
4x63E2Shared1.8680.850021
1x357x38a2_on010.73130121
1x357x42a2_on04.3550121
1x397x38a2_on03.24754121
3x36Liga2_on010.2750010
3x406x48a2_on014.97630121
5x405x43a2_on05.08251111
5x406x55a2_on03.85751111
5x435x461a2_on04.5251112
5x43Liga2_on03.121251110
6x517x41a2_on03.318750012
E3E3a2_on04.893751311
7x30E3a2_on03.863756321
7x42Liga2_on06.4154110
6x57E3a2_on03.0250021
1x337x35a2_on02.670021
3x29E2a2_on02.33750021
3x32Liga2_on01.963750010

Location and physicochemical properties of the interaction partners of this ligand

Interactions of this ligand

Difference Members
Id Description
a2_off a2a_off
a2_on a2a_on
a2b_on
Network Difference
Value a2_off a2_on
Imin 3.36 3.04625
Number of Linked Nodes 271 260
Number of Specific Nodes 13 (4.80%) 2  (0.77%)
Number of Shared Nodes 258 (95.20%) 258  (99.23%)
Number of Links 308 293
Number of Specific Links 127 (41.23%) 112  (38.23%)
Number of Shared Links 181 (58.77%) 181  (61.77%)
Number of Hubs 40 35
Number of Specific Hubs 16 (40.00%) 11  (31.43%)
Number of Shared Hubs 24 (60.00%) 24  (68.57%)
Average % Shared Neighbours (Jaccard) 46.99
Average % Shared Neighbours (Otsuka) 56.27
Average % Shared Neighbours (Overlap Coefficient) 65.89
Average % Shared Cliques (k3-6) 55.49
Graphlets Similarity 0.643706
Paths Difference
Value a2_off a2_on
Number Of Nodes in MetaPath 51 62
Specific Nodes in MetaPath 23 (45.10%) 34  (54.84%)
Shared Nodes in MetaPath 258 (95.20%) 258  (95.20%)
Number Of Links MetaPath 52 67
Specific Links in MetaPath 36 (69.23%) 51  (76.12%)
Shared Links in MetaPath 181 (58.77%) 181  (58.77%)
Number of Shortest Paths 70307 49725
Length Of Smallest Path 3 3
Average Path Length 15.3937 12.8416
Length of Longest Path 38 29
Minimum Path Strength 0.386 0.51625
Average Path Strength 6.03495 5.9361
Maximum Path Strength 20.621 21.4292
Minimum Path Correlation 0.703 0.7
Average Path Correlation 0.915377 0.918084
Maximum Path Correlation 0.99 0.98875
Minimum % Of Corr. Nodes 3.125 3.7037
Average % Of Corr. Nodes 41.5338 43.6435
Maximum % Of Corr. Nodes 100 100
Minimum Path Hubs % 0 0
Average Path Hubs % 45.3561 44.233
Maximum Path Hubs % 100 100

Details about the values in these tables can be found in the corresponding documentation page .

You can download a compressed (zip) file with structure(s), 3D outputs (as PyMol and VMD scripts) and numerical data files (as csv and plain text files).

Download a2_off_on.zip<



You can click to copy the link of this page to easily come back here later

or use this QR code to link and share this page.



You can also  read or  download a guide explaining the meaning of all files and numerical data.