Orange: nodes, hubs and links specific of bombesin_off network

Green: nodes, hubs and links shared by both networks

Purple: nodes, hubs and links specific of bombesin_on network

Index: hub id, click on each number to highlight the corresponding hub in the 3D visualization.

Hub: the hub being considered.

Owner: the name of the network the hub belong to or "Shared" if the corresponding hub is present in both networks.

Avg Int. Strength: the average interaction strength of all the links of the corresponding hub in the corresponding network.

Num Of Links: the number of links of the corresponding hub in the corresponding network.

ConSurf: this column reports the ConSurf conservation grades of each hub.


Index Hub Owner bombesin_off Avg Int. Strength bombesin_on Avg Int. Strength bombesin_off Num Of Links bombesin_on Num Of Links ConSurf
11x43 bombesin_off5.4626.14527
21x50 bombesin_off6.74254.74625429
31x60 bombesin_off3.8155.17436
43x30 bombesin_off4.512.80083436
53x39 bombesin_off8.225.89419
63x41 bombesin_off5.134.07435
73x42 bombesin_off5.1556.3725428
83x50 bombesin_off6.84754.63419
93x51 bombesin_off8.5910.2217438
104x50 bombesin_off7.639.45667439
116x48 bombesin_off7.63411.625538
126x51 bombesin_off4.62256.50917435
137x46 bombesin_off5.9758.18428
147x54 bombesin_off7.18758.67667437
158x54 bombesin_off8.90257.90917437
162x38 Shared4.4922.67375547
172x42 Shared5.171674.6245657
182x50 Shared8.03755.7005459
192x64 Shared6.0256.121454
20E1x50 Shared5.951437.124758
21E2 Shared18.739213.518513173
225x47 Shared7.2266.99125548
235x58 Shared7.7946.1875558
246x55 Shared11.345.465445
25E3 Shared9.521119.577089123
267x42 Shared7.374.1425457
277x45 Shared6.75.279459
288x50 Shared7.984.115469
29Lig Shared10.686911.253913230
301x39 bombesin_on12.65334.8825357
311x55 bombesin_on7.534.7244
321x57 bombesin_on4.815.6775347
332x46 bombesin_on5.765.61938249
342x56 bombesin_on4.585.7315157
352x59 bombesin_on2.923.8225146
362x60 bombesin_on7.784.83563246
372x63 bombesin_on67.72438145
382x65 bombesin_on1.171.38625144
39E1x52 bombesin_on7.773335.86812347
403x28 bombesin_on4.344.37375245
413x32 bombesin_on6.366.03125346
423x43 bombesin_on4.154.61875149
434x61 bombesin_on10.64.34333365
445x34 bombesin_on2.264.13937141
455x39 bombesin_on6.454.4355
465x43 bombesin_on7.196674.63062346
475x57 bombesin_on5.976.575347
485x60 bombesin_on5.343333.17313343
495x65 bombesin_on3.313.251358
506x27 bombesin_on3.13.45125144
516x30 bombesin_on8.6353.2385257
526x44 bombesin_on9.347.62375349
536x52 bombesin_on6.957.78062347
546x54 bombesin_on4.563.99125145
556x58 bombesin_on4.125.75875144
566x59 bombesin_on5.8054.17375244
577x30 bombesin_on6.633336.54813344
587x31 bombesin_on10.056.97375144
597x34 bombesin_on6.974.42688144
607x38 bombesin_on10.155.086155
617x49 bombesin_on5.726674.612359
628x57 bombesin_on8.847.065245
   
Orange: nodes, hubs and links specific of bombesin_off network

Green: nodes, hubs and links shared by both networks

Purple: nodes, hubs and links specific of bombesin_on network

Index: link id, click on each number to highlight the corresponding link in the 3D visualization.

Node1 Node2: the two nodes of the corresponding link.

Owner: the name of the network the link belong to or "Shared" if the corresponding link is present in both networks.

Recurrence: the relative Recurrence in the filtered pool of shortest paths.

Hub1?, Hub2?: "Yes" if the corresponding node has more than 3 links, otherwise "No".

ConSurf1, ConSurf2: these columns report the ConSurf conservation grades of the two nodes involved in a link.


Index Node1 Node2 Owner bombesin_off Recurrence bombesin_on Recurrence bombesin_off Hub1? bombesin_on Hub1? bombesin_off Hub2? bombesin_on Hub2? ConSurf1 ConSurf2
11x42 7x42 bombesin_off11.66490NoNoYesYes77
21x43 2x54 bombesin_off23.6460YesNoNoNo76
32x54 7x46 bombesin_off24.94072.69511NoNoYesNo68
41x50 2x50 bombesin_off23.14144.03387YesNoYesYes99
51x50 2x47 bombesin_off13.39740YesNoNoNo99
62x50 7x49 bombesin_off28.44818.37345YesYesNoYes99
76x40 7x49 bombesin_off49.21890NoNoNoYes79
86x40 7x53 bombesin_off37.52360NoNoNoNo79
97x53 8x50 bombesin_off35.0861.10686NoNoYesYes99
108x50 8x54 bombesin_off20.56417.60392YesYesYesNo97
111x54 2x47 bombesin_off11.95672.2102NoNoNoNo79
123x39 7x46 bombesin_off23.91340YesNoYesNo98
133x39 6x44 bombesin_off95.11280YesNoNoYes99
143x40 6x44 bombesin_off91.30750NoNoNoYes89
153x40 3x41 bombesin_off89.3387.94125NoNoYesNo85
163x41 4x49 bombesin_off81.98291.15254YesNoNoNo57
173x42 4x49 bombesin_off81.18050YesNoNoNo87
182x42 3x42 bombesin_off74.32370YesYesYesNo78
192x38 2x42 bombesin_off29.56660YesYesYesYes77
202x38 3x49 bombesin_off24.9650YesYesNoNo78
212x39 3x49 bombesin_off17.71320NoNoNoNo88
222x37 2x39 bombesin_off17.03242.2102NoNoNoNo88
232x37 2x40 bombesin_off15.36081.10686NoNoNoNo88
242x40 I1x50 bombesin_off13.6770NoNoNoNo87
251x60 I1x50 bombesin_off12.20592.19614YesNoNoNo67
263x49 3x50 bombesin_off10.40670NoNoYesNo89
273x46 6x37 bombesin_off40.36230NoNoNoNo98
283x50 6x37 bombesin_off12.35180YesNoNoNo98
296x48 Lig bombesin_off96.54730YesNoYesYes80
303x32 Lig bombesin_off11.18478.62645NoYesYesYes60
31E1x50 E2 bombesin_off14.28480YesYesYesYes83
323x33 4x57 bombesin_off12.47956.42679NoNoNoNo47
333x30 4x57 bombesin_off10.93555.15478YesNoNoNo67
343x39 7x45 bombesin_off30.84310YesNoYesYes99
353x41 5x46 bombesin_off11.14220YesNoNoNo56
365x58 5x61 bombesin_off26.86160YesYesNoNo88
373x51 5x61 bombesin_off17.78010YesNoNoNo88
383x50 3x53 bombesin_off11.34890YesNoNoNo98
39E2 E3 bombesin_off16.0721.31066YesYesYesYes33
405x35 Lig bombesin_off16.05980NoNoYesYes30
415x35 E3 bombesin_off14.88060NoNoYesYes33
426x55 Lig bombesin_off12.38833.16244YesYesYesYes50
436x36 6x40 bombesin_off10.01154.42391NoNoNoNo87
447x30 E3 bombesin_off14.32130.509505NoYesYesYes43
457x54 8x54 bombesin_off12.94154.3958YesNoYesNo77
461x43 7x42 bombesin_off14.27880YesNoYesYes77
472x50 3x39 bombesin_off42.52021.34931YesYesYesNo99
482x42 3x46 Shared41.450413.8831YesYesNoNo79
496x44 6x48 Shared10047.152NoYesYesNo98
50E2 Lig Shared42.787717.9592YesYesYesYes30
514x61 Lig Shared15.409415.6049NoYesYesYes50
523x33 4x61 Shared14.011313.6126NoNoNoYes45
535x58 6x37 Shared36.654327.0494YesYesNoNo88
546x52 Lig Shared20.041395.6534NoYesYesYes70
555x47 6x52 Shared10.886910.4958YesYesNoYes87
567x45 7x49 Shared24.375445.4232YesYesNoYes99
571x35 7x35 bombesin_on021.2657NoNoNoNo64
582x64 7x35 bombesin_on011.947YesYesNoNo44
592x64 Lig bombesin_on014.0061YesYesYesYes40
607x42 Lig bombesin_on013.4966YesYesYesYes70
617x31 7x35 bombesin_on011.3005NoYesNoNo44
627x31 Lig bombesin_on013.1206NoYesYesYes40
636x48 6x52 bombesin_on0100YesNoNoYes87
646x48 7x45 bombesin_on055.2584YesNoYesYes89
657x49 7x50 bombesin_on050.7607NoYesNoNo99
661x53 7x50 bombesin_on043.9931NoNoNoNo99
671x53 2x43 bombesin_on2.5955940.8026NoNoNoNo98
681x57 2x43 bombesin_on027.8155NoYesNoNo78
691x57 8x50 bombesin_on024.0662NoYesYesYes79
702x43 3x46 bombesin_on014.9021NoNoNoNo89
713x43 6x44 bombesin_on028.455NoYesNoYes99
722x46 3x43 bombesin_on1.62317.7062NoYesNoYes99
732x46 3x42 bombesin_on3.2399222.6958NoYesYesNo98
742x45 3x42 bombesin_on8.0177520.4575NoNoYesNo98
752x45 4x50 bombesin_on6.437315.9598NoNoYesNo99
762x63 Lig bombesin_on010.7769NoYesYesYes50
773x38 4x50 bombesin_on1.62311.434NoNoYesNo79
785x54 6x44 bombesin_on056.4215NoNoNoYes89
793x47 5x54 bombesin_on4.9905855.7082NoNoNoNo98
803x47 5x57 bombesin_on027.6257NoNoNoYes97
815x53 5x57 bombesin_on1.6716313.4052NoNoNoYes77
825x49 5x53 bombesin_on011.2407NoNoNoNo57
835x49 5x50 bombesin_on1.62310.1479NoNoNoNo59
843x47 5x58 bombesin_on6.6318234.1122NoNoYesYes98
853x51 5x57 bombesin_on4.9905813.2612YesNoNoYes87
865x61 6x37 bombesin_on026.0445NoNoNoNo88
87E3 Lig bombesin_on014.0377YesYesYesYes30
885x61 5x65 bombesin_on8.260924.1294NoNoNoYes88
895x65 6x30 bombesin_on019.0906NoYesNoYes87
906x27 6x30 bombesin_on013.212NoYesNoYes47
911x32 2x65 bombesin_on010.9385NoNoNoYes44
921x36 2x65 bombesin_on017.2705NoNoNoYes64
931x35 1x36 bombesin_on019.4209NoNoNoNo66
943x24 E1x52 bombesin_on012.2668NoNoNoYes67
953x43 7x49 bombesin_on015.6682NoYesNoYes99

Here, those paths that begin and end at given residue pair(s) or that pass through a residue are used to generate a novel metapath. Such a path filtering is particularly recommended if some information on allosteric residues is available. The selection syntax for a residue pair ("Pairs") is C:C:c534,A:A:?600 (the lower-case "c" stands for cytosine and "?" indicates any non standard amino acid or nucleotide residue). Selection of more than one apical residue pair has the following syntax: C:C:c534,A:A:?600,C:C:c534,A:A:E41. Only one residue can be selected as a tail ("Tail"). For midway residue(s), each residue must be separated by a comma as well e.g. A:A:?600,A:A:E41.

Midway



Download PSN data

2D representation of the global metapath, ligand(s) interactions and
histograms of path distribution according to several parameters
(click on the image to enlarge it 🔍):

A 2D representation of the global communication in the network.

Number of shortest communication paths as a function of the average residue correlation.

Number of shortest communication paths as a function of the average interaction strength of their links.

Number of shortest communication paths as a function of the % of hub nodes in each path.

Number of shortest communication paths as a function of the number of nodes in each path.

Number of shortest communication paths as a function of the % of correlated nodes in each path.


2D representation of the interactions of this orthosteric/allosteric ligand.


Node1Node2OwnerNet1LinkStrengthNet2LinkStrengthComm1Comm2Node1ShellNode2Shell
1x352x64bombesin_off9.6700021
1x362x64bombesin_off9.7400021
1x391x43Shared10.886.0452122
1x392x60Shared12.643.16252122
1x397x42Shared14.446.192121
1x427x42bombesin_off6.2800021
1x437x42bombesin_off7.5402021
2x533x35Shared6.013.750112
2x537x46bombesin_off4.500112
2x5513x28bombesin_off4.5600022
2x563x32Shared4.5810.680111
2x63E1x50Shared68.50112
E1E2Shared12.788.060111
E1x49E2bombesin_off4.2801021
3x25E1x50Shared3.923.2651122
E1x50E2bombesin_off4.5601121
E1x50E2x50Shared6.5311.4251121
3x22E2Shared19.178.590121
3x25E2Shared4.763.2951121
3x25E2x50Shared7.287.281121
3x26E2bombesin_off9.6801021
3x283x32Shared4.124.120121
3x294x61bombesin_off6.2901111
3x294x65Shared5.343.11751111
3x29LigShared10.9716.01751110
3x32LigShared10.384.310110
3x334x61Shared9.283.6450021
3x366x48bombesin_off4.900011
4x61LigShared16.235.53751110
4x65E2x52bombesin_off5.3400111
E2E2Shared74.6738.00751111
E2E2x51Shared4.398.3551112
E2E2x52Shared5.5612.521111
E2x52LigShared15.5420.40751110
6x58E2bombesin_off4.1200121
E2E3Shared11.9128.0251111
E2LigShared13.0637.26251110
5x29E3Shared9.7611.16250121
5x32E3bombesin_off18.2700021
5x35E3bombesin_off6.9501111
5x35Ligbombesin_off8.2301110
5x385x42Shared4.184.911012
5x386x55bombesin_off6.5301011
5x38Ligbombesin_off7.1601010
5x396x59Shared6.523.260122
5x426x55bombesin_off7.6301021
5x435x47Shared8.254.1251122
5x436x52Shared6.794.80751121
5x476x52Shared7.6212.3351121
6x446x48Shared14.0315.5350021
6x486x51bombesin_off4.5201011
6x487x41bombesin_off6.4801012
6x48Ligbombesin_off8.2401010
6x517x37bombesin_off4.6901112
6x517x41Shared4.697.2051112
6x51LigShared4.597.80251110
6x52LigShared6.447.6351110
6x547x33Shared4.562.2650122
6x556x59Shared5.096.04251112
6x55LigShared26.117.4651110
6x576x61Shared28.317.9150122
6x61E3Shared8.624.31751121
E3E3Shared717.4951111
7x27E3Shared7.362.9450121
7x30E3Shared8.824.7251111
7x307x33bombesin_off4.1101112
7x307x34Shared6.976.2251112
7x317x35Shared10.057.3050112
7x38LigShared10.155.87250110
1x322x64bombesin_off3.5200021
2x592x60bombesin_off2.9200122
4x645x34Shared2.266.22250022
5x28Ligbombesin_off1.8300010
5x285x31bombesin_off1.6300012
5x305x31bombesin_off1.4900022
1x311x32bombesin_off1.4300022
7x397x42bombesin_off1.2200021
2x642x65bombesin_off1.1700112
1x351x36bombesin_on03.390022
1x357x35bombesin_on04.67250022
1x397x39bombesin_on07.122122
1x432x57bombesin_on06.2352022
2x532x56bombesin_on03.9650111
2x567x42bombesin_on03.840111
2x56Ligbombesin_on07.63750110
2x577x42bombesin_on03.390021
2x592x63bombesin_on03.92250121
2x593x28bombesin_on03.0750122
2x593x32bombesin_on05.0150121
2x602x64bombesin_on05.74750121
2x607x38bombesin_on06.550121
2x63Ligbombesin_on017.4850110
2x647x31bombesin_on04.63250111
2x647x34bombesin_on03.4650112
2x647x35bombesin_on04.460112
2x64Ligbombesin_on012.30110
E1Ligbombesin_on05.05250110
3x223x26bombesin_on03.29250122
3x283x29bombesin_on03.390121
3x36Ligbombesin_on05.5850010
4x614x65bombesin_on03.591111
4x61E2x52bombesin_on05.89751111
4x615x38bombesin_on03.6951111
4x65Ligbombesin_on06.6250110
5x28E2bombesin_on03.7450011
5x29E2bombesin_on09.05750121
E2x50Ligbombesin_on05.1751110
5x34E2bombesin_on03.810121
5x35E2bombesin_on08.441111
6x55E2bombesin_on04.71751111
6x59E2bombesin_on04.13250121
5x315x34bombesin_on03.190022
5x345x38bombesin_on03.3350121
5x396x55bombesin_on03.6350121
6x486x52bombesin_on06.3451011
6x487x45bombesin_on012.9951012
6x517x38bombesin_on04.521111
6x546x58bombesin_on06.1650122
6x547x34bombesin_on04.11250122
6x547x38bombesin_on03.42250121
6x57E3bombesin_on04.31250121
6x587x30bombesin_on07.90121
6x587x34bombesin_on03.9050122
6x587x38bombesin_on05.0650121
E3Ligbombesin_on08.69751110
7x30Ligbombesin_on07.34251110
7x31Ligbombesin_on015.32750110
7x42Ligbombesin_on03.412110
2x53Ligbombesin_on03.18250110
2x607x42bombesin_on03.88250121
4x615x39bombesin_on03.6951112
4x645x35bombesin_on012.4450021
5x36E2bombesin_on08.3450121
5x39E2bombesin_on05.4450121
5x33E3bombesin_on08.240021
5x36E3bombesin_on04.870121
5x395x43bombesin_on05.9650122
5x30E3bombesin_on02.640021
2x5512x56bombesin_on02.5350021
E1E1x49bombesin_on02.4350112
1x362x65bombesin_on02.05250022
5x325x35bombesin_on01.260021
1x322x65bombesin_on01.03750022
2x622x63bombesin_on00.990021
1x317x31bombesin_on00.630021

Location and physicochemical properties of the interaction partners of this ligand

Interactions of this ligand

Difference Members
Id Description
bombesin_off bb2_off
bombesin_on bb2_on
bb1_on
Network Difference
Value bombesin_off bombesin_on
Imin 3.89 3.0725
Number of Linked Nodes 249 278
Number of Specific Nodes 3 (1.20%) 32  (11.51%)
Number of Shared Nodes 246 (98.80%) 246  (88.49%)
Number of Links 261 329
Number of Specific Links 120 (45.98%) 188  (57.14%)
Number of Shared Links 141 (54.02%) 141  (42.86%)
Number of Hubs 29 47
Number of Specific Hubs 15 (51.72%) 33  (70.21%)
Number of Shared Hubs 14 (48.28%) 14  (29.79%)
Average % Shared Neighbours (Jaccard) 32.84
Average % Shared Neighbours (Otsuka) 42.54
Average % Shared Neighbours (Overlap Coefficient) 53.08
Average % Shared Cliques (k3-6) 51.67
Graphlets Similarity 0.525259
Paths Difference
Value bombesin_off bombesin_on
Number Of Nodes in MetaPath 54 48
Specific Nodes in MetaPath 34 (62.96%) 28  (58.33%)
Shared Nodes in MetaPath 246 (98.80%) 246  (98.80%)
Number Of Links MetaPath 56 48
Specific Links in MetaPath 47 (83.93%) 39  (81.25%)
Shared Links in MetaPath 141 (54.02%) 141  (54.02%)
Number of Shortest Paths 33342 52489
Length Of Smallest Path 3 3
Average Path Length 12.2519 11.627
Length of Longest Path 27 26
Minimum Path Strength 1.405 0.8075
Average Path Strength 7.171 6.13769
Maximum Path Strength 21.17 23.16
Minimum Path Correlation 0.7 0.7
Average Path Correlation 0.921409 0.930365
Maximum Path Correlation 0.99 0.99
Minimum % Of Corr. Nodes 4.7619 4.7619
Average % Of Corr. Nodes 53.9302 54.5886
Maximum % Of Corr. Nodes 100 100
Minimum Path Hubs % 0 0
Average Path Hubs % 43.0212 46.1374
Maximum Path Hubs % 100 100

Details about the values in these tables can be found in the corresponding documentation page .

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