Orange: nodes, hubs and links specific of ccr8_off network

Green: nodes, hubs and links shared by both networks

Purple: nodes, hubs and links specific of ccr8_on network

Index: hub id, click on each number to highlight the corresponding hub in the 3D visualization.

Hub: the hub being considered.

Owner: the name of the network the hub belong to or "Shared" if the corresponding hub is present in both networks.

Avg Int. Strength: the average interaction strength of all the links of the corresponding hub in the corresponding network.

Num Of Links: the number of links of the corresponding hub in the corresponding network.

ConSurf: this column reports the ConSurf conservation grades of each hub.


Index Hub Owner ccr8_off Avg Int. Strength ccr8_on Avg Int. Strength ccr8_off Num Of Links ccr8_on Num Of Links ConSurf
11x43 ccr8_off5.395.72436
21x50 ccr8_off7.157.25333439
32x54 ccr8_off3.646.52333435
4E1x49 ccr8_off5.02758.6425
53x32 ccr8_off5.3310.12436
64x41 ccr8_off2.32751.63424
74x50 ccr8_off6.939.105429
8E2.Y187 ccr8_off10.4953.86415
95x50 ccr8_off4.83753.65439
107x46 ccr8_off4.3626.86538
118x53 ccr8_off10.372510.81425
12Lig Shared472.83126.823213340
131x39 Shared6.311678.35647
141x54 Shared2.3843.665547
152x42 Shared4.60756.782456
162x50 Shared6.546.17667469
172x53 Shared5.6326.32833566
182x57 Shared6.39759.318457
19E1x50 Shared7.529.65667568
20E1x52 Shared7.6689.4325547
213x33 Shared6.5369.222553
223x37 Shared5.4757.27456
233x41 Shared3.885.68444
243x42 Shared8.19258.854457
253x51 Shared7.733338.17648
26I2x57 Shared7.13756.8975447
275x54 Shared7.2088.2975547
285x58 Shared5.5628.19558
296x48 Shared11.12759.22333468
307x42 Shared7.032511.4625447
317x45 Shared6.78.55669
327x53 Shared5.8145.766559
338x50 Shared5.37.1425448
341x60 ccr8_on9.74.4275245
352x44 ccr8_on3.54.585245
363x38 ccr8_on6.036674.5925346
373x49 ccr8_on17.878.305148
38E2.Q182 ccr8_on4.1656.358252
39E2x51 ccr8_on11.359.326152
40E2.F186 ccr8_on7.513336.40667365
415x35 ccr8_on5.766679.852352
425x36 ccr8_on8.5757.09243
435x40 ccr8_on8.4155.7825244
446x47 ccr8_on4.463335.106357
456x57 ccr8_on2.131.4075245
   
Orange: nodes, hubs and links specific of ccr8_off network

Green: nodes, hubs and links shared by both networks

Purple: nodes, hubs and links specific of ccr8_on network

Index: link id, click on each number to highlight the corresponding link in the 3D visualization.

Node1 Node2: the two nodes of the corresponding link.

Owner: the name of the network the link belong to or "Shared" if the corresponding link is present in both networks.

Recurrence: the relative Recurrence in the filtered pool of shortest paths.

Hub1?, Hub2?: "Yes" if the corresponding node has more than 3 links, otherwise "No".

ConSurf1, ConSurf2: these columns report the ConSurf conservation grades of the two nodes involved in a link.


Index Node1 Node2 Owner ccr8_off Recurrence ccr8_on Recurrence ccr8_off Hub1? ccr8_on Hub1? ccr8_off Hub2? ccr8_on Hub2? ConSurf1 ConSurf2
11x39 2x60 ccr8_off50.75157.23893YesYesNoNo75
22x60 2x63 ccr8_off49.42890NoNoNoNo55
32x63 E2.Q182 ccr8_off24.87040.338935NoNoNoYes52
4E2.E177 E2.Q182 ccr8_off23.42751.34504NoNoNoYes12
5E2.E177 Lig ccr8_off21.96590NoNoYesYes10
62x57 7x42 ccr8_off11.51653.98873YesYesYesYes77
77x46 7x47 ccr8_off11.01680YesNoNoNo86
83x32 7x42 ccr8_off69.41460YesNoYesYes67
91x46 7x46 ccr8_off11.73820NoNoYesNo88
101x50 2x51 ccr8_off14.60510YesNoNoNo97
118x49 I1x48 ccr8_off12.84660NoNoNoNo66
128x49 8x50 ccr8_off16.55520NoNoYesYes68
137x53 8x50 ccr8_off21.39480YesYesYesYes98
142x42 3x45 ccr8_off93.50723.13604YesYesNoNo65
153x45 4x49 ccr8_off94.08960NoNoNoNo56
163x41 4x49 ccr8_off98.47828.38774YesYesNoNo46
173x33 5x43 ccr8_off42.00420YesYesNoNo34
182x53 6x48 ccr8_off41.29030YesYesYesYes68
191x54 2x51 ccr8_off12.80531.50558YesYesNoNo77
203x43 5x54 ccr8_off56.73330NoNoYesYes87
213x43 6x40 ccr8_off58.6120NoNoNoNo87
226x40 7x53 ccr8_off62.27930NoNoYesYes79
233x47 5x54 ccr8_off23.44630.124871NoNoYesYes97
245x58 6x41 ccr8_off22.34541.38428YesYesNoNo87
255x54 6x41 ccr8_off23.44630.0463805YesYesNoNo77
265x57 5x58 ccr8_off26.20050NoNoYesYes78
274x41 4x42 ccr8_off12.84666.2471YesNoNoNo47
282x42 4x42 ccr8_off14.09037.79193YesYesNoNo67
295x43 6x55 ccr8_off12.48590NoNoNoNo45
306x49 6x50 ccr8_off17.89661.1274NoNoNoNo59
316x50 7x37 ccr8_off22.20260NoNoNoNo97
326x51 7x37 ccr8_off27.83875.65129NoNoNoNo67
333x32 6x51 ccr8_off29.20640YesNoNoNo66
347x26 7x30 ccr8_off12.056.0366NoNoNoNo24
356x57 7x30 ccr8_off13.5234.9092NoYesNoNo54
366x53 6x57 ccr8_off14.98841.8802NoNoNoYes65
376x49 6x53 ccr8_off16.44620NoNoNoNo56
381x39 7x42 Shared63.395212.851YesYesYesYes77
392x53 7x46 Shared20.52345.6099YesYesYesNo68
402x53 3x32 Shared54.07382.1435YesYesYesNo66
411x50 2x50 Shared16.130622.6087YesNoYesYes99
422x50 7x45 Shared13.789768.2686YesYesYesYes99
433x46 7x53 Shared81.013750.4549NoNoYesYes99
442x42 3x46 Shared81.738949.3061YesYesNoNo69
453x37 3x41 Shared10011.3775YesYesYesYes64
463x36 3x37 Shared98.49716.3224NoNoYesYes76
473x36 5x43 Shared44.848618.7913NoNoNoNo74
483x32 3x33 Shared46.97916.1012YesNoYesYes63
493x36 6x48 Shared58.957720.1862NoNoYesYes78
50E1x50 E1x52 Shared13.928811.3061YesYesYesYes87
513x47 5x58 Shared22.345418.3203NoNoYesYes98
523x51 5x57 Shared23.855913.932YesYesNoNo87
532x63 E1x50 Shared23.4215.616NoNoYesYes58
546x48 7x45 Shared17.592222.8299YesYesYesYes89
551x39 7x39 ccr8_on3.1449614.2674YesYesNoNo74
561x43 2x57 ccr8_on6.6356110.6497YesNoYesYes67
572x53 2x57 ccr8_on012.2801YesYesYesYes67
583x32 Lig ccr8_on065.5785YesNoYesYes60
592x63 Lig ccr8_on016.433NoNoYesYes50
60E1x50 E2x50 ccr8_on1.570615.3734YesYesNoNo89
61E2x50 Lig ccr8_on017.8173NoNoYesYes90
622x53 7x45 ccr8_on7.0376556.2203YesYesYesYes69
632x50 7x46 ccr8_on5.9254545.4494YesYesYesNo98
641x50 7x50 ccr8_on7.3607921.8845YesNoNoNo99
651x54 2x47 ccr8_on1.8486517.6353YesYesNoNo78
661x53 2x47 ccr8_on019.0588NoNoNoNo88
671x53 7x50 ccr8_on1.8486520.4752NoNoNoNo89
681x54 2x44 ccr8_on5.5309213.3219YesYesNoYes75
691x60 8x53 ccr8_on5.2265716.9111NoYesYesNo55
708x53 I1x48 ccr8_on9.0704118.4059YesNoNoNo56
712x40 I1x48 ccr8_on019.8937NoNoNoNo86
722x37 2x40 ccr8_on1.315122.6622NoNoNoNo78
732x37 2x39 ccr8_on024.1286NoNoNoNo77
742x39 3x49 ccr8_on025.5806NoNoNoYes78
752x42 3x49 ccr8_on036.9153YesYesNoYes68
767x49 7x53 ccr8_on099.2543NoNoYesYes99
772x50 7x49 ccr8_on2.74667100YesYesNoNo99
785x43 Lig ccr8_on018.7235NoNoYesYes40
793x34 4x57 ccr8_on2.4723814.1889NoNoNoNo46
803x33 4x57 ccr8_on5.6398915.7301YesYesNoNo36
81E1x50 E2.V174 ccr8_on6.6919711.2705YesYesNoNo84
82E2x51 Lig ccr8_on036.0591NoYesYesYes20
833x50 5x58 ccr8_on039.5947NoNoYesYes98
843x50 7x53 ccr8_on040.8006NoNoYesYes99
853x47 5x57 ccr8_on016.9503NoNoNoNo97
863x49 I2x57 ccr8_on1.315110.8602NoYesYesYes87
875x35 E2x52 ccr8_on012.0696NoYesNoNo24
88E2x51 E2x52 ccr8_on013.5467NoYesNoNo24
895x36 E2x51 ccr8_on023.0083NoYesNoYes32
905x36 6x58 ccr8_on012.933NoYesNoNo34
915x51 6x48 ccr8_on013.0187NoNoYesYes68
925x58 6x37 ccr8_on9.6302716.9111YesYesNoNo87
935x62 6x37 ccr8_on015.409NoNoNoNo57
945x62 6x34 ccr8_on012.3836NoNoNoNo56
956x32 6x35 ccr8_on010.6675NoNoNoNo06
966x35 6x39 ccr8_on013.7072NoNoNoNo65
976x39 7x52 ccr8_on015.2164NoNoNoNo58
987x52 7x53 ccr8_on018.2133NoNoYesYes89
996x47 7x45 ccr8_on2.9270310.8031NoYesYesYes79
1006x58 7x30 ccr8_on012.0304NoNoNoNo44
1016x47 7x43 ccr8_on011.9412NoYesNoNo75
1022x53 7x42 ccr8_on013.2256YesYesYesYes67

Here, those paths that begin and end at given residue pair(s) or that pass through a residue are used to generate a novel metapath. Such a path filtering is particularly recommended if some information on allosteric residues is available. The selection syntax for a residue pair ("Pairs") is C:C:c534,A:A:?600 (the lower-case "c" stands for cytosine and "?" indicates any non standard amino acid or nucleotide residue). Selection of more than one apical residue pair has the following syntax: C:C:c534,A:A:?600,C:C:c534,A:A:E41. Only one residue can be selected as a tail ("Tail"). For midway residue(s), each residue must be separated by a comma as well e.g. A:A:?600,A:A:E41.

Midway



Download PSN data

2D representation of the global metapath, ligand(s) interactions and
histograms of path distribution according to several parameters
(click on the image to enlarge it 🔍):

A 2D representation of the global communication in the network.

Number of shortest communication paths as a function of the average residue correlation.

Number of shortest communication paths as a function of the average interaction strength of their links.

Number of shortest communication paths as a function of the % of hub nodes in each path.

Number of shortest communication paths as a function of the number of nodes in each path.

Number of shortest communication paths as a function of the % of correlated nodes in each path.


2D representation of the interactions of this orthosteric/allosteric ligand.


Node1Node2OwnerNet1LinkStrengthNet2LinkStrengthComm1Comm2Node1ShellNode2Shell
E1x49Ligccr8_off3.9601010
E2.G179LigShared8.941.860110
E2.L181Ligccr8_off5.5201010
E2.S176Ligccr8_off6.2600010
E2.D178LigShared25.3825.290010
E2.E177Ligccr8_off9.8101110
E2.Q173Ligccr8_off19.801010
3x22Ligccr8_off10.1201010
E2.N188Ligccr8_off8.3900010
5x31Ligccr8_off7.8901010
E2.Q189Ligccr8_off11.0901010
1x392x60Shared5.6412.44021
1x397x38ccr8_off4.4904021
1x397x39Shared4.8412.094022
1x397x42Shared5.165.164022
2x533x32Shared4.139.283121
2x602x63ccr8_off4.5100111
2x63E1x50Shared4.8210.610112
2x63E2.Q182Shared4.514.510111
2x66E1x49Shared6.535.220021
E1x49E2.V180ccr8_off4.301011
E1x49E2.L181Shared5.3211.981011
3x25E1x50ccr8_off3.9206022
E1x50E2.V174Shared3.683.686022
E1x50E2x50Shared9.1415.676021
3x22E2.V174Shared4.764.761012
3x25E2x50Shared7.287.286021
3x323x33Shared8.9412.910111
3x327x42ccr8_off5.1600112
3x334x57Shared4.993.750112
3x334x61Shared8.2112.890112
3x334x65Shared6.9510.920112
3x335x43ccr8_off3.5900111
3x365x43Shared3.738.710021
4x65E2x52ccr8_off7.6300022
E2.F186E2.Q173ccr8_off7.0300111
E2.A175E2.F186Shared4.169.710121
E2.E177E2.Q182Shared3.825.11111
E2.F186E2x51Shared11.354.130111
E2.Y187E2x52ccr8_off6.3600022
5x32E2.Y187ccr8_off3.7500112
5x36E2.Y187ccr8_off14.3300122
5x31E2.Q189ccr8_off5.1201011
5x406x55ccr8_off12.3600121
5x436x55ccr8_off4.2400111
5x446x55ccr8_off4.1200021
7x387x42Shared8.1612.834112
7x287x32ccr8_off3.3800022
6x547x34ccr8_off3.1700021
3x326x51ccr8_off3.0900112
3x223x26Shared31.51012
5x335x36ccr8_off2.8200012
6x617x27Shared2.796.970021
7x357x39ccr8_off2.6500012
7x317x32ccr8_off1.2500012
1x25Ligccr8_on016.080010
2x63Ligccr8_on08.560110
E2.V180Ligccr8_on06.970110
2x60Ligccr8_on010.020110
7x35Ligccr8_on05.560010
7x38Ligccr8_on08.624110
3x32Ligccr8_on08.170110
E2x50Ligccr8_on04.866110
3x33Ligccr8_on05.640110
E2x51Ligccr8_on023.860110
5x43Ligccr8_on04.080110
6x55Ligccr8_on05.320110
7x34Ligccr8_on06.180010
E2.Q182Ligccr8_on09.420110
E2.F186Ligccr8_on04.080110
LigNT.D26ccr8_on015.491101
LigNT.P24ccr8_on027.171101
LigNT.C25ccr8_on05.591101
7x24Ligccr8_on06.980110
7x27Ligccr8_on05.280110
LigNT.S22ccr8_on013.41101
LigNT.I20ccr8_on022.621101
LigNT.C21ccr8_on07.281101
5x32Ligccr8_on014.070110
5x33Ligccr8_on07.510010
6x64Ligccr8_on04.180010
E3.D270Ligccr8_on04.040010
NT.C21NT.S22ccr8_on05.160111
7x24NT.C25ccr8_on07.280111
2x537x42ccr8_on07.53122
4x65E2x51ccr8_on04.960021
E2.A175E2.E177ccr8_on04.530121
E2.L181E2.S176ccr8_on04.51011
E2.E177E2.F186ccr8_on071111
E2.Q182E2.V180ccr8_on05.730111
E2.F186E2.Q182ccr8_on07.030111
E2x51E2x52ccr8_on08.90112
5x36E2x51ccr8_on04.780121
5x35E2x52ccr8_on04.940022
5x32E2.F186ccr8_on06.490111
5x31E2.N188ccr8_on05.281011
5x315x35ccr8_on08.761012
5x365x40ccr8_on08.390122
6x516x55ccr8_on014.610021
5x35E2.Y187ccr8_on03.860022
NT.P24NT.S23ccr8_on03.560112
7x31Ligccr8_on03.170010
7x23Ligccr8_on03.010010
E2.G179E2.S176ccr8_on01.860111
1x24Ligccr8_on01.710010
7x28NT.C25ccr8_on01.530021
3x22E2.Q173ccr8_on01.421011
E2.N188E2.Q189ccr8_on01.320011

Location and physicochemical properties of the interaction partners of this ligand

Interactions of this ligand

Difference Members
Id Description
ccr8_off 8TLM-CCR8-Anti-murine CCR8 antibody
ccr8_on 8U1U-CCR8-CCL1-Gi1/&β;1/&γ;2
Network Difference
Value ccr8_off ccr8_on
Imin 3.59 3.93
Number of Linked Nodes 254 287
Number of Specific Nodes 1 (0.39%) 34  (11.85%)
Number of Shared Nodes 253 (99.61%) 253  (88.15%)
Number of Links 268 327
Number of Specific Links 107 (39.93%) 166  (50.76%)
Number of Shared Links 161 (60.07%) 161  (49.24%)
Number of Hubs 33 34
Number of Specific Hubs 11 (33.33%) 12  (35.29%)
Number of Shared Hubs 22 (66.67%) 22  (64.71%)
Average % Shared Neighbours (Jaccard) 39.68
Average % Shared Neighbours (Otsuka) 49.86
Average % Shared Neighbours (Overlap Coefficient) 61.29
Average % Shared Cliques (k3-6) 77.14
Graphlets Similarity 0.538597
Paths Difference
Value ccr8_off ccr8_on
Number Of Nodes in MetaPath 53 63
Specific Nodes in MetaPath 24 (45.28%) 34  (53.97%)
Shared Nodes in MetaPath 253 (99.61%) 253  (99.61%)
Number Of Links MetaPath 54 65
Specific Links in MetaPath 37 (68.52%) 48  (73.85%)
Shared Links in MetaPath 161 (60.07%) 161  (60.07%)
Number of Shortest Paths 47701 59471
Length Of Smallest Path 3 3
Average Path Length 15.3267 12.1414
Length of Longest Path 33 26
Minimum Path Strength 1.4 1.38
Average Path Strength 5.80771 7.04003
Maximum Path Strength 22.59 19.9767
Minimum Path Correlation 0.7 0.7
Average Path Correlation 0.972485 0.943307
Maximum Path Correlation 1 0.99
Minimum % Of Corr. Nodes 5.88235 5.55556
Average % Of Corr. Nodes 67.5772 57.6556
Maximum % Of Corr. Nodes 100 100
Minimum Path Hubs % 0 0
Average Path Hubs % 44.3142 40.9505
Maximum Path Hubs % 100 100

Details about the values in these tables can be found in the corresponding documentation page .

You can download a compressed (zip) file with structure(s), 3D outputs (as PyMol and VMD scripts) and numerical data files (as csv and plain text files).

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