Orange: nodes, hubs and links specific of cxcr_off network

Green: nodes, hubs and links shared by both networks

Purple: nodes, hubs and links specific of cxcr_on network

Index: hub id, click on each number to highlight the corresponding hub in the 3D visualization.

Hub: the hub being considered.

Owner: the name of the network the hub belong to or "Shared" if the corresponding hub is present in both networks.

Avg Int. Strength: the average interaction strength of all the links of the corresponding hub in the corresponding network.

Num Of Links: the number of links of the corresponding hub in the corresponding network.

ConSurf: this column reports the ConSurf conservation grades of each hub.


Index Hub Owner cxcr_off Avg Int. Strength cxcr_on Avg Int. Strength cxcr_off Num Of Links cxcr_on Num Of Links ConSurf
11x24 cxcr_off110405
21x26 cxcr_off7.5150404
31x27 cxcr_off8.34750406
41x30 cxcr_off8.81255.1325424
52x45 cxcr_off6.145.26429
62x53 cxcr_off7.9826.19167537
72x54 cxcr_off3.47252.565416
82x60 cxcr_off8.93511.6617
93x29 cxcr_off6.14512.52416
103x41 cxcr_off5.9483.46515
113x45 cxcr_off4.7983.455515
123x50 cxcr_off5.41256.3439
13I2x57 cxcr_off6.1456.93167636
14E2x52 cxcr_off9.83257.82435
15I3 cxcr_off3.552.51833434
166x51 cxcr_off8.1254.96333437
177x38 cxcr_off9.07257.3475425
187x43 cxcr_off3.64753.46425
197x45 cxcr_off7.21257.405439
207x50 cxcr_off5.974.77333439
21NT Shared18.161718.9372694
221x39 Shared5.113.93547
232x42 Shared6.08755.7175447
24E1x50 Shared7.438576.159759
25E1x52 Shared9.18753.43457
263x32 Shared8.86.58375446
273x51 Shared6.077.02548
28E2 Shared17.901414.742914123
296x32 Shared2.29252.42875448
306x44 Shared6.4654.82125649
316x48 Shared7.18.023559
32E3 Shared6.354297.15917763
337x42 Shared7.1645.0225547
34Lig Shared69.0794118.6216120
351x32 cxcr_on1.5654.2325244
362x44 cxcr_on3.833.32875245
372x46 cxcr_on6.9755.42249
383x33 cxcr_on7.355.807255
393x36 cxcr_on9.387.1025147
403x37 cxcr_on7.016675.0575367
413x49 cxcr_on8.666675.925348
423x56 cxcr_on10.984.871256
43I2x52 cxcr_on04.56375045
444x42 cxcr_on9.454.5525247
454x65 cxcr_on8.789.22625144
465x36 cxcr_on3.066676.35625344
475x40 cxcr_on1.437.19145
485x44 cxcr_on2.944.70875145
495x58 cxcr_on8.467.973158
506x40 cxcr_on2.773.335347
516x58 cxcr_on8.143335.68345
526x61 cxcr_on4.0453.5025243
536x62 cxcr_on2.435.5725163
547x53 cxcr_on17.495.71159
558x50 cxcr_on04.774050
   
Orange: nodes, hubs and links specific of cxcr_off network

Green: nodes, hubs and links shared by both networks

Purple: nodes, hubs and links specific of cxcr_on network

Index: link id, click on each number to highlight the corresponding link in the 3D visualization.

Node1 Node2: the two nodes of the corresponding link.

Owner: the name of the network the link belong to or "Shared" if the corresponding link is present in both networks.

Recurrence: the relative Recurrence in the filtered pool of shortest paths.

Hub1?, Hub2?: "Yes" if the corresponding node has more than 3 links, otherwise "No".

ConSurf1, ConSurf2: these columns report the ConSurf conservation grades of the two nodes involved in a link.


Index Node1 Node2 Owner cxcr_off Recurrence cxcr_on Recurrence cxcr_off Hub1? cxcr_on Hub1? cxcr_off Hub2? cxcr_on Hub2? ConSurf1 ConSurf2
11x27 7x31 cxcr_off13.53920YesNoNoNo64
27x31 Lig cxcr_off22.71061.4412NoNoYesYes40
31x30 1x31 cxcr_off17.87870YesNoNoNo43
41x30 1x34 cxcr_off11.42920YesNoNoNo45
51x35 1x39 cxcr_off23.39992.71364NoNoYesYes67
61x39 2x60 cxcr_off22.64030YesYesYesNo77
72x60 Lig cxcr_off29.04770YesNoYesYes70
81x39 7x39 cxcr_off11.3871.81355YesYesNoNo74
97x38 7x42 cxcr_off10.45157.28636YesNoYesYes57
107x38 Lig cxcr_off80.8066.89794YesNoYesYes50
117x43 7x48 cxcr_off15.52263.72623YesNoNoNo56
126x40 7x48 cxcr_off19.26430NoYesNoNo76
133x43 6x40 cxcr_off35.39880NoNoNoYes87
143x43 6x44 cxcr_off38.75370NoNoYesYes89
156x48 6x51 cxcr_off98.93090YesYesYesNo97
166x51 7x38 cxcr_off1000YesNoYesNo75
172x54 2x57 cxcr_off12.35050YesNoNoNo68
182x53 2x57 cxcr_off14.05960YesNoNoNo78
192x53 2x60 cxcr_off34.65330YesNoYesNo77
202x50 7x46 cxcr_off59.53724.39057NoNoNoNo99
217x45 7x46 cxcr_off61.46430YesNoNoNo99
223x35 7x45 cxcr_off47.72820NoNoYesNo89
236x48 7x45 cxcr_off21.85264.10126YesYesYesNo99
241x53 2x47 cxcr_off11.45731.53228NoNoNoNo89
252x40 2x43 cxcr_off11.45730NoNoNoNo88
262x43 7x49 cxcr_off15.81090NoNoNoNo89
277x49 7x50 cxcr_off39.49220NoNoYesNo99
283x49 I2x57 cxcr_off46.6241.73855NoYesYesNo86
292x42 3x49 cxcr_off51.77244.33967YesYesNoYes78
302x42 3x45 cxcr_off58.13760YesYesYesNo75
313x45 4x49 cxcr_off68.53292.94133YesNoNoNo57
323x41 4x49 cxcr_off69.96060YesNoNoNo57
333x40 3x41 cxcr_off86.48190NoNoYesNo75
343x40 6x44 cxcr_off90.81452.36807NoNoYesYes79
352x45 3x42 cxcr_off18.16710YesNoNoNo97
362x46 3x42 cxcr_off20.37568.81329NoYesNoNo97
372x46 7x49 cxcr_off22.577.71497NoYesNoNo99
382x45 4x50 cxcr_off11.42210YesNoNoNo99
393x28 Lig cxcr_off14.03850NoNoYesYes50
40E1x50 Lig cxcr_off12.88510YesYesYesYes90
41E1x49 E1x51 cxcr_off11.13380NoNoNoNo43
42E1x49 E2 cxcr_off12.84992.53951NoNoYesYes43
433x29 Lig cxcr_off16.65490YesNoYesYes60
446x48 6x52 cxcr_off12.47010YesYesNoNo98
453x41 3x44 cxcr_off11.72460YesNoNoNo57
463x51 3x52 cxcr_off13.53210YesYesNoNo85
473x52 I2x57 cxcr_off20.85380NoNoYesNo56
483x53 I2x57 cxcr_off15.36780.884007NoNoYesNo86
493x41 5x49 cxcr_off11.72460YesNoNoNo56
503x53 6x32 cxcr_off13.48290NoNoYesYes88
516x36 7x52 cxcr_off13.63060NoNoNoNo77
526x40 7x52 cxcr_off15.52261.77605NoYesNoNo77
536x61 7x26 cxcr_off11.21823.57621NoYesNoNo31
546x61 7x30 cxcr_off13.03989.633NoYesNoNo35
551x31 1x35 cxcr_off16.26810NoNoNoNo36
561x39 7x42 cxcr_off18.82826.26038YesYesYesYes77
576x44 7x45 cxcr_off38.71150YesYesYesNo99
586x44 6x48 Shared76.649396.981YesYesYesYes99
591x50 7x50 Shared55.640749.1106NoNoYesNo99
601x50 2x50 Shared57.59653.0485NoNoNoNo99
612x53 3x35 Shared47.67911.2751YesNoNoNo78
621x53 7x50 Shared13.70845.0201NoNoYesNo89
63E2 Lig Shared38.092616.9542YesYesYesYes30
646x58 Lig Shared21.824422.577NoYesYesYes50
656x58 7x30 Shared16.640910.4768NoYesNoNo55
662x53 7x42 Shared11.633113.7075YesNoYesYes77
671x32 NT cxcr_on014.6504NoYesYesYes44
68Lig NT cxcr_on5.3453420.2598YesYesYesYes04
692x50 7x49 cxcr_on058.5775NoNoNoNo99
707x49 7x53 cxcr_on066.2684NoNoNoYes99
713x50 7x53 cxcr_on035.6764YesNoNoYes99
723x50 5x58 cxcr_on046.7452YesNoNoYes98
733x47 5x58 cxcr_on095.0362NoNoNoYes98
743x47 5x54 cxcr_on3.9597798.974NoNoNoNo97
755x54 6x44 cxcr_on099.0571NoNoYesYes79
763x36 6x48 cxcr_on0100NoYesYesYes79
773x36 5x44 cxcr_on061.4091NoYesNoYes75
785x44 6x55 cxcr_on059.7884NoYesNoNo55
795x40 6x55 cxcr_on059.6223NoYesNoNo55
805x36 5x40 cxcr_on1.8849329.2687NoYesNoYes45
815x36 Lig cxcr_on019.7884NoYesYesYes40
826x40 7x53 cxcr_on038.5186NoYesNoYes79
835x58 6x40 cxcr_on046.0461NoYesNoYes87
845x40 6x58 cxcr_on029.5044NoYesNoYes55
857x54 8x50 cxcr_on039.491NoNoNoYes70
861x53 7x54 cxcr_on042.2663NoNoNoNo87
871x56 8x50 cxcr_on010.5572NoNoNoYes70
881x57 8x50 cxcr_on020.9965NoNoNoYes60
891x57 2x44 cxcr_on4.620910.6268NoNoNoYes65
902x42 3x46 cxcr_on3.6995412.7752YesYesNoNo78
913x46 3x50 cxcr_on010.584NoNoYesNo89
922x53 3x32 cxcr_on1.8216320.7045YesNoYesYes76
93E1x50 E2 cxcr_on1.835711.4332YesYesYesYes93
94E1x50 E2x50 cxcr_on1.89913.6619YesYesNoNo99
954x65 E2x50 cxcr_on014.7361NoYesNoNo49
963x32 3x33 cxcr_on022.7511YesYesNoYes65
973x33 4x61 cxcr_on7.7296418.9392NoYesNoNo54
984x61 4x65 cxcr_on015.2022NoNoNoYes44
993x47 5x57 cxcr_on1.983421.46NoNoNoNo96
1003x51 5x57 cxcr_on019.6116YesYesNoNo86
1015x44 6x52 cxcr_on010.8626NoYesNoNo58
1026x36 7x56 cxcr_on010.3134NoNoNoNo70
1036x36 6x40 cxcr_on011.1439NoNoNoYes77
1046x51 7x37 cxcr_on9.2769711.1197YesNoNoNo76
1053x33 3x36 cxcr_on037.3239NoYesNoYes57

Here, those paths that begin and end at given residue pair(s) or that pass through a residue are used to generate a novel metapath. Such a path filtering is particularly recommended if some information on allosteric residues is available. The selection syntax for a residue pair ("Pairs") is C:C:c534,A:A:?600 (the lower-case "c" stands for cytosine and "?" indicates any non standard amino acid or nucleotide residue). Selection of more than one apical residue pair has the following syntax: C:C:c534,A:A:?600,C:C:c534,A:A:E41. Only one residue can be selected as a tail ("Tail"). For midway residue(s), each residue must be separated by a comma as well e.g. A:A:?600,A:A:E41.

Midway



Download PSN data

2D representation of the global metapath, ligand(s) interactions and
histograms of path distribution according to several parameters
(click on the image to enlarge it 🔍):

A 2D representation of the global communication in the network.

Number of shortest communication paths as a function of the average residue correlation.

Number of shortest communication paths as a function of the average interaction strength of their links.

Number of shortest communication paths as a function of the % of hub nodes in each path.

Number of shortest communication paths as a function of the number of nodes in each path.

Number of shortest communication paths as a function of the % of correlated nodes in each path.


2D representation of the interactions of this orthosteric/allosteric ligand.


Node1Node2OwnerNet1LinkStrengthNet2LinkStrengthComm1Comm2Node1ShellNode2Shell
LigNTShared62.4359.931101
NTNTShared10.0936.111111
1x24NTcxcr_off9.7501011
7x24NTShared7.287.280021
1x25NTcxcr_off9.3300021
1x247x27cxcr_off9.301011
1x247x28cxcr_off7.2301012
1x24Ligcxcr_off17.7201010
1x277x28cxcr_off12.2601022
1x277x31cxcr_off10.201021
1x277x32cxcr_off6.9901022
1x317x35cxcr_off5.9600122
1x392x60cxcr_off3.8601021
1x397x42Shared5.165.5151022
2x532x60cxcr_off6.0101021
2x533x32Shared5.165.581022
2x537x42Shared11.793.9351022
2x563x28cxcr_off4.7600021
2x59E1x52Shared10.722.511022
2x593x28Shared3.933.0751021
2x603x32Shared14.4711.61012
2x607x38cxcr_off8.7201011
2x607x42cxcr_off8.0201012
2x60Ligcxcr_off12.5301010
2x63E1x50Shared4.476.7951011
2x63E2cxcr_off4.7601011
2x63Ligcxcr_off16.8601010
E1x49E2Shared21.43.711021
E1x50E1x52cxcr_off17.0401112
3x25E1x50Shared3.926.531121
E1x50E2Shared4.95.651111
E1x50E2x50Shared14.377.8351112
E1x50Ligcxcr_off4.5601110
3x22E2Shared106.331121
3x25E2x50Shared7.287.281122
3x28Ligcxcr_off4.4701010
3x294x61cxcr_off6.301012
3x294x65Shared8.7812.521012
3x29E2x52cxcr_off5.6401012
3x29Ligcxcr_off3.8601010
3x327x42cxcr_off6.1901022
4x61E2x52Shared13.16.611122
4x64E2Shared14.246.021121
4x645x35cxcr_off5.0101122
E2E2Shared43.1542.41111
E2LigShared37.3242.61110
E2E2x51Shared11.894.151111
E2x51LigShared7.2816.8951110
E2E2x52cxcr_off13.3801112
5x35E2Shared24.318.451021
5x36E2cxcr_off6.3101111
5x39E2cxcr_off10.3201021
5x34E2cxcr_off5.4900021
6x517x38cxcr_off13.4700021
6x587x34cxcr_off4.201111
6x58LigShared17.315.631110
7x27LigShared21.7523.5551110
7x317x35cxcr_off8.3701012
7x31LigShared13.072.7651010
7x387x42Shared4.665.2451112
7x38LigShared9.449.451110
6x547x34Shared3.533.7250021
6x587x30Shared2.922.81112
3x21E1x50cxcr_off2.8100021
2x593x24cxcr_off2.4401022
3x24E1x52Shared2.446.091022
6x62LigShared2.437.220110
5x335x36cxcr_off1.4600021
5x365x40Shared1.433.7351112
7x28NTcxcr_on011.461021
1x31NTcxcr_on03.6350121
1x317x32cxcr_on012.050122
2x563x32cxcr_on03.7550022
4x614x65cxcr_on04.5151122
4x65E2x50cxcr_on07.660122
4x65E2x52cxcr_on012.210122
5x36E2x51cxcr_on013.891111
5x39E2x52cxcr_on04.641022
5x32E2cxcr_on06.5650021
5x315x34cxcr_on08.2450122
5x36Ligcxcr_on04.071110
5x376x62cxcr_on08.6850021
5x406x58cxcr_on07.740021
6x586x62cxcr_on06.551111
7x34Ligcxcr_on06.80110
E2NTcxcr_on05.9151111
1x32NTcxcr_on04.7250121
7x32NTcxcr_on05.271121
3x24E1x50cxcr_on03.9851021
5x366x62cxcr_on03.731111
6x627x27cxcr_on05.8650111
5x31E2cxcr_on02.7250121
3x21E1x52cxcr_on01.510022
5x336x62cxcr_on01.3850021

Location and physicochemical properties of the interaction partners of this ligand

Interactions of this ligand

Difference Members
Id Description
cxcr_off cxcr4_off
cxcr_on cxcr1_on
cxcr2_on
Network Difference
Value cxcr_off cxcr_on
Imin 3.68 3.62
Number of Linked Nodes 232 261
Number of Specific Nodes 11 (4.74%) 40  (15.33%)
Number of Shared Nodes 221 (95.26%) 221  (84.67%)
Number of Links 270 289
Number of Specific Links 158 (58.52%) 177  (61.25%)
Number of Shared Links 112 (41.48%) 112  (38.75%)
Number of Hubs 34 35
Number of Specific Hubs 20 (58.82%) 21  (60.00%)
Number of Shared Hubs 14 (41.18%) 14  (40.00%)
Average % Shared Neighbours (Jaccard) 25.50
Average % Shared Neighbours (Otsuka) 33.55
Average % Shared Neighbours (Overlap Coefficient) 41.81
Average % Shared Cliques (k3-6) 51.19
Graphlets Similarity 0.605247
Paths Difference
Value cxcr_off cxcr_on
Number Of Nodes in MetaPath 63 47
Specific Nodes in MetaPath 42 (66.67%) 26  (55.32%)
Shared Nodes in MetaPath 221 (95.26%) 221  (95.26%)
Number Of Links MetaPath 66 48
Specific Links in MetaPath 57 (86.36%) 39  (81.25%)
Shared Links in MetaPath 112 (41.48%) 112  (41.48%)
Number of Shortest Paths 35141 61598
Length Of Smallest Path 3 3
Average Path Length 12.0647 15.1551
Length of Longest Path 26 32
Minimum Path Strength 1.39 0.665
Average Path Strength 7.65782 6.94544
Maximum Path Strength 41.3533 35.695
Minimum Path Correlation 0.71 0.7
Average Path Correlation 0.95496 0.952554
Maximum Path Correlation 0.99 0.99
Minimum % Of Corr. Nodes 6.25 4
Average % Of Corr. Nodes 61.3693 55.3279
Maximum % Of Corr. Nodes 100 100
Minimum Path Hubs % 0 0
Average Path Hubs % 47.2684 45.4141
Maximum Path Hubs % 100 100

Details about the values in these tables can be found in the corresponding documentation page .

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Download cxcr_off_on.zip<



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