Orange: nodes, hubs and links specific of dop_off network

Green: nodes, hubs and links shared by both networks

Purple: nodes, hubs and links specific of dop_on network

Index: hub id, click on each number to highlight the corresponding hub in the 3D visualization.

Hub: the hub being considered.

Owner: the name of the network the hub belong to or "Shared" if the corresponding hub is present in both networks.

Avg Int. Strength: the average interaction strength of all the links of the corresponding hub in the corresponding network.

Num Of Links: the number of links of the corresponding hub in the corresponding network.

ConSurf: this column reports the ConSurf conservation grades of each hub.


Index Hub Owner dop_off Avg Int. Strength dop_on Avg Int. Strength dop_off Num Of Links dop_on Num Of Links ConSurf
11x39 dop_off3.639.555428
22x45 dop_off9.616.14333439
32x50 dop_off6.9551.95419
42x57 dop_off3.4627.69333537
53x37 dop_off5.064.5436
63x43 dop_off4.493.835428
73x49 dop_off9.542510.555428
85x61 dop_off4.6654.74667438
95x66 dop_off7.20753.64415
106x30 dop_off2.626.32427
116x34 dop_off6.67253.93333437
126x44 dop_off10.8858.02429
137x27 dop_off3.794.99667433
147x42 dop_off8.222511.9033437
157x45 dop_off5.6559.42439
167x53 dop_off6.91256.9439
178x47 dop_off7.54255.41428
182x42 Shared7.9066.23547
19E1x50 Shared5.3526.65833568
20E1x52 Shared8.1558.266456
213x34 Shared5.436.875544
223x51 Shared6.767.7575548
234x50 Shared8.798.4125449
24E2 Shared12.31410.37210154
255x44 Shared5.82255.7375445
265x47 Shared6.1385.194557
275x58 Shared7.36.05833469
286x48 Shared9.246675.82833668
29Lig Shared9.2312.904411180
301x36 dop_on6.186674.805346
311x53 dop_on5.053.2425148
322x41 dop_on2.463332.95345
332x43 dop_on9.672.5575148
342x44 dop_on4.3856.5925245
352x64 dop_on7.786.4925245
36E2x50 dop_on6.096675.6425349
375x40 dop_on6.666678.505345
38I3 dop_on1.215.13571174
396x52 dop_on8.126674.1375347
40E3 dop_on6.2166711.242351
417x49 dop_on7.4355.7249
428x50 dop_on7.216676.0825348
   
Orange: nodes, hubs and links specific of dop_off network

Green: nodes, hubs and links shared by both networks

Purple: nodes, hubs and links specific of dop_on network

Index: link id, click on each number to highlight the corresponding link in the 3D visualization.

Node1 Node2: the two nodes of the corresponding link.

Owner: the name of the network the link belong to or "Shared" if the corresponding link is present in both networks.

Recurrence: the relative Recurrence in the filtered pool of shortest paths.

Hub1?, Hub2?: "Yes" if the corresponding node has more than 3 links, otherwise "No".

ConSurf1, ConSurf2: these columns report the ConSurf conservation grades of the two nodes involved in a link.


Index Node1 Node2 Owner dop_off Recurrence dop_on Recurrence dop_off Hub1? dop_on Hub1? dop_off Hub2? dop_on Hub2? ConSurf1 ConSurf2
11x39 2x61 dop_off13.77140YesNoNoNo87
21x36 2x61 dop_off11.52151.54038NoYesNoNo67
31x39 2x57 dop_off22.58370YesNoYesNo87
42x54 2x57 dop_off13.77140NoNoYesNo67
57x42 Lig dop_off85.86290YesNoYesYes70
66x48 Lig dop_off80.67870YesYesYesYes80
76x44 6x48 dop_off82.80682.86154YesNoYesYes98
83x43 6x44 dop_off87.96290YesNoYesNo89
93x43 6x41 dop_off79.10380YesNoNoNo87
105x54 6x41 dop_off77.56630NoNoNoNo87
113x47 5x54 dop_off76.36640NoNoNoNo98
123x47 5x58 dop_off75.95391.53445NoNoYesYes99
135x61 6x34 dop_off83.35990YesNoYesNo87
143x50 6x34 dop_off68.52910NoNoYesNo97
153x50 6x33 dop_off65.55730NoNoNoNo97
166x32 6x33 dop_off64.00110NoNoNoNo77
176x32 8x47 dop_off60.98250NoNoYesNo78
186x36 8x47 dop_off38.61440NoNoYesNo88
196x36 7x53 dop_off29.10850NoNoYesNo89
207x49 7x53 dop_off23.1937.84999NoYesYesNo99
212x50 7x49 dop_off21.17750YesNoNoYes99
221x50 2x50 dop_off10.81840NoNoYesNo99
235x43 Lig dop_off40.44251.35079NoNoYesYes50
243x37 5x43 dop_off39.01750YesNoNoNo65
253x37 3x41 dop_off38.51131.50483YesNoNoNo64
263x41 4x49 dop_off38.34260NoNoNoNo47
272x45 4x49 dop_off36.78640YesNoNoNo97
282x45 4x50 dop_off32.83966.65324YesNoYesYes99
298x47 8x50 dop_off21.17750YesNoNoYes88
308x50 I1x50 dop_off12.92770NoYesNoNo86
311x60 I1x50 dop_off10.81840NoNoNoNo56
322x45 4x46 dop_off45.47677.41158YesNoNoNo97
332x42 3x46 dop_off30.51470YesYesNoNo78
342x42 3x49 dop_off16.50895.88897YesYesYesNo78
352x46 3x43 dop_off16.24640NoNoYesNo98
362x46 3x42 dop_off16.71515.72901NoNoNoNo97
372x60 2x63 dop_off44.81110NoNoNoNo65
382x63 E1x50 dop_off38.99880.0651697NoNoYesYes58
393x28 E1x50 dop_off11.32460NoNoYesYes58
405x40 Lig dop_off40.47065.14248NoYesYesYes50
415x36 5x40 dop_off30.36471.46928NoNoNoYes55
425x36 E2 dop_off28.26471.95509NoNoYesYes54
43E1x50 E2x50 dop_off11.35280.11849YesYesNoYes89
443x34 4x50 dop_off19.05884.49079YesYesYesYes49
453x36 6x52 dop_off14.17460NoNoNoYes67
465x58 6x37 dop_off31.16151.54038YesYesNoNo97
473x51 5x61 dop_off22.99620YesYesYesNo88
484x41 I2x56 dop_off12.47770NoNoNoNo54
495x35 E2 dop_off11.52151.57NoNoYesYes34
505x47 6x52 dop_off46.03929.36074YesYesNoYes77
515x44 5x47 dop_off17.65260.112566YesYesYesYes57
525x44 5x48 dop_off11.95284.24196YesYesNoNo54
536x30 6x34 dop_off18.94634.55596YesNoYesNo77
545x65 6x30 dop_off10.52780NoNoYesNo87
556x58 Lig dop_off15.57146.51697NoNoYesYes40
566x58 E3 dop_off13.55585.2906NoNoNoYes41
573x46 6x37 dop_off29.91470NoNoNoNo87
582x45 3x42 dop_off15.05588.47207YesNoNoNo97
592x57 7x42 Shared47.220499.0817YesNoYesNo77
605x58 5x61 Shared10024.0536YesYesYesNo98
612x41 4x46 Shared10.818437.9229NoYesNoNo57
622x42 4x46 Shared42.101833.1122YesYesNoNo77
632x42 4x45 Shared12.365224.1839YesYesNoNo75
642x60 7x42 Shared46.582999.3009NoNoYesNo67
65E1x50 E1x52 Shared13.733913.0754YesYesYesYes86
663x36 Lig Shared15.215131.5185NoNoYesYes60
676x48 6x52 Shared34.573924.6875YesYesNoYes87
682x64 7x35 dop_on2.1468113.3776NoYesNoNo54
691x39 7x35 dop_on016.245YesNoNoNo84
701x39 7x38 dop_on017.661YesNoNoNo85
717x38 Lig dop_on6.9372818.4727NoNoYesYes50
722x60 Lig dop_on0100NoNoYesYes60
731x42 2x57 dop_on6.9654112.0327NoNoYesNo77
741x43 2x57 dop_on4.6592396.8956NoNoYesNo67
751x43 1x47 dop_on096.2794NoNoNoNo66
761x47 2x54 dop_on6.9654195.9536NoNoNoNo66
772x54 7x47 dop_on095.6159NoNoNoNo67
781x50 7x47 dop_on094.9049NoNoNoNo97
791x50 7x51 dop_on094.1466NoNoNoNo96
801x53 7x51 dop_on092.9202NoYesNoNo86
811x53 1x57 dop_on087.6829NoYesNoNo87
821x53 7x54 dop_on013.1821NoYesNoNo86
831x57 2x44 dop_on062.4978NoNoNoYes75
841x54 2x44 dop_on4.3592416.7309NoNoNoYes75
851x54 2x48 dop_on6.5154215.4985NoNoNoNo76
867x54 8x50 dop_on011.7187NoNoNoYes68
871x57 2x43 dop_on044.0666NoNoNoYes78
882x44 I1x50 dop_on044.3273NoYesNoNo56
892x41 I1x50 dop_on043.2549NoYesNoNo56
902x43 3x46 dop_on034.5103NoYesNoNo88
912x48 4x50 dop_on8.6528514.4321NoNoYesYes69
922x56 2x60 dop_on010.4331NoNoNoNo56
93E1x50 Lig dop_on015.8896YesYesYesYes80
94E2 Lig dop_on031.0149YesYesYesYes40
953x36 6x48 dop_on1.1905924.1424NoNoYesYes68
966x52 Lig dop_on041.0392NoYesYesYes70
973x40 6x48 dop_on018.1587NoNoYesYes78
983x40 5x50 dop_on6.5716713.028NoNoNoNo79
996x48 7x45 dop_on5.9904423.2419YesYesYesNo89
1007x45 7x49 dop_on018.1587YesNoNoYes99
1013x46 3x50 dop_on033.2484NoNoNoNo89
1023x50 5x58 dop_on031.9746NoNoYesYes99
1034x45 I2x56 dop_on020.1374NoNoNoNo54
1043x52 I2x56 dop_on8.4653618.9407NoNoNoNo54
1053x48 3x52 dop_on017.5544NoNoNoNo65
1063x48 5x57 dop_on2.1936816.1562NoNoNoNo66
1073x51 5x57 dop_on4.3779914.7461YesYesNoNo86
1085x61 5x65 dop_on018.5319YesNoNoNo88
1095x65 I3 dop_on017.0922NoNoNoYes84

Here, those paths that begin and end at given residue pair(s) or that pass through a residue are used to generate a novel metapath. Such a path filtering is particularly recommended if some information on allosteric residues is available. The selection syntax for a residue pair ("Pairs") is C:C:c534,A:A:?600 (the lower-case "c" stands for cytosine and "?" indicates any non standard amino acid or nucleotide residue). Selection of more than one apical residue pair has the following syntax: C:C:c534,A:A:?600,C:C:c534,A:A:E41. Only one residue can be selected as a tail ("Tail"). For midway residue(s), each residue must be separated by a comma as well e.g. A:A:?600,A:A:E41.

Midway



Download PSN data

2D representation of the global metapath, ligand(s) interactions and
histograms of path distribution according to several parameters
(click on the image to enlarge it 🔍):

A 2D representation of the global communication in the network.

Number of shortest communication paths as a function of the average residue correlation.

Number of shortest communication paths as a function of the average interaction strength of their links.

Number of shortest communication paths as a function of the % of hub nodes in each path.

Number of shortest communication paths as a function of the number of nodes in each path.

Number of shortest communication paths as a function of the % of correlated nodes in each path.


2D representation of the interactions of this orthosteric/allosteric ligand.


Node1Node2OwnerNet1LinkStrengthNet2LinkStrengthComm1Comm2Node1ShellNode2Shell
2x563x28dop_off9.5200022
2x577x42Shared4.6915.240021
2x602x63dop_off8.1400111
2x607x42Shared11.2711.270111
2x63E1x50Shared4.644.640111
E1x49E2Shared6.534.853021
E1x50E1x52Shared9.0217.040112
E1x50E2x50Shared7.846.530111
3x22E2Shared16.998.490121
3x25E2x50Shared7.287.280121
3x327x42Shared8.059.21011
3x32Ligdop_off16.8101010
3x334x60Shared9.6712.090112
3x33LigShared12.113.680110
3x366x48Shared8.145.821111
3x366x52dop_off6.5701111
3x36LigShared13.628.381110
3x375x43dop_off5.2400021
3x406x44dop_off8.7900022
E2E2Shared31.7233.943111
E2E2x51Shared9.645.243112
5x35E2Shared4.019.773021
5x36E2Shared9.5514.333121
5x39E2Shared6.499.080021
5x365x40Shared9.688.33121
5x406x59Shared4.59.010112
5x40LigShared5.8212.160110
5x43LigShared4.15.050010
5x445x47Shared4.299.651122
5x476x52Shared13.583.391121
6x446x48Shared25.0511.021021
6x447x45dop_off4.8301022
6x486x52Shared4.234.231011
6x487x41dop_off4.2201012
6x487x45Shared6.787.911012
6x48Ligdop_off7.0601010
6x517x38dop_off4.4201011
6x51Ligdop_off4.9101010
6x547x34Shared8.539.740021
6x55LigShared17.434.040110
6x58E3Shared11.0450112
7x38LigShared6.8810.251110
7x42Ligdop_off8.8801010
6x58LigShared3.926.130110
4x63E2Shared3.733.730121
2x632x64dop_off3.5800112
1x392x57dop_off3.5200022
3x33E2x52dop_off3.5200111
3x29E2x50Shared3.173.170111
3x294x64dop_off3.1500112
7x347x38Shared2.854.280111
3x21E1x50Shared2.812.810021
5x32E2Shared2.762.640021
3x28E1x50dop_off2.4500021
1x397x38dop_on06.040021
2x562x60dop_on05.670021
2x60Ligdop_on010.540110
2x63Ligdop_on015.270110
3x25E1x50dop_on03.920121
E1x50Ligdop_on05.010110
3x25E2dop_on03.380121
3x29Ligdop_on04.870110
3x363x37dop_on03.731112
3x406x48dop_on03.520021
4x60E2x52dop_on04.280021
E2E3dop_on011.733112
E2Ligdop_on03.683110
E2x50Ligdop_on05.590110
E2E2x52dop_on03.653111
E2x52Ligdop_on05.30110
5x31E2dop_on07.130121
5x366x59dop_on02.893122
5x406x55dop_on04.550111
5x446x52dop_on05.661121
6x516x55dop_on03.071011
6x517x37dop_on03.271012
6x52Ligdop_on03.271110
E3E3dop_on016.670122
7x34Ligdop_on05.960110
6x487x46dop_on02.471012

Location and physicochemical properties of the interaction partners of this ligand

Interactions of this ligand

Difference Members
Id Description
dop_off 4EJ4-δ-Naltrindole
dop_on 8F7S-δ-Deltorphin-Gi1/&β;1/&γ;2
Network Difference
Value dop_off dop_on
Imin 4 2.83
Number of Linked Nodes 240 239
Number of Specific Nodes 17 (7.08%) 16  (6.69%)
Number of Shared Nodes 223 (92.92%) 223  (93.31%)
Number of Links 250 259
Number of Specific Links 123 (49.20%) 132  (50.97%)
Number of Shared Links 127 (50.80%) 127  (49.03%)
Number of Hubs 29 25
Number of Specific Hubs 17 (58.62%) 13  (52.00%)
Number of Shared Hubs 12 (41.38%) 12  (48.00%)
Average % Shared Neighbours (Jaccard) 35.79
Average % Shared Neighbours (Otsuka) 43.96
Average % Shared Neighbours (Overlap Coefficient) 52.43
Average % Shared Cliques (k3-6) 75.00
Graphlets Similarity 0.436367
Paths Difference
Value dop_off dop_on
Number Of Nodes in MetaPath 66 51
Specific Nodes in MetaPath 38 (57.58%) 23  (45.10%)
Shared Nodes in MetaPath 223 (92.92%) 223  (92.92%)
Number Of Links MetaPath 67 51
Specific Links in MetaPath 58 (86.57%) 42  (82.35%)
Shared Links in MetaPath 127 (50.80%) 127  (50.80%)
Number of Shortest Paths 28451 32407
Length Of Smallest Path 3 3
Average Path Length 12.4181 14.5835
Length of Longest Path 30 33
Minimum Path Strength 1.295 1.435
Average Path Strength 7.19114 6.0222
Maximum Path Strength 17.12 14.475
Minimum Path Correlation 0.7 0.7
Average Path Correlation 0.92167 0.917826
Maximum Path Correlation 0.99 0.99
Minimum % Of Corr. Nodes 4.7619 3.7037
Average % Of Corr. Nodes 51.5898 48.4744
Maximum % Of Corr. Nodes 100 100
Minimum Path Hubs % 0 0
Average Path Hubs % 43.7817 29.4231
Maximum Path Hubs % 100 100

Details about the values in these tables can be found in the corresponding documentation page .

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