Orange: nodes, hubs and links specific of endothelin_off network

Green: nodes, hubs and links shared by both networks

Purple: nodes, hubs and links specific of endothelin_on network

Index: hub id, click on each number to highlight the corresponding hub in the 3D visualization.

Hub: the hub being considered.

Owner: the name of the network the hub belong to or "Shared" if the corresponding hub is present in both networks.

Avg Int. Strength: the average interaction strength of all the links of the corresponding hub in the corresponding network.

Num Of Links: the number of links of the corresponding hub in the corresponding network.

ConSurf: this column reports the ConSurf conservation grades of each hub.


Index Hub Owner endothelin_off Avg Int. Strength endothelin_on Avg Int. Strength endothelin_off Num Of Links endothelin_on Num Of Links ConSurf
11x32 endothelin_off00426
21x35 endothelin_off66.66670435
31x36 endothelin_off00416
4I1x50 endothelin_off33.33330437
52x40 endothelin_off00438
62x53 endothelin_off1000638
72x57 endothelin_off33.33330437
83x30 endothelin_off33.33330436
93x33 endothelin_off66.66670424
103x50 endothelin_off66.66670429
11I2x54 endothelin_off00414
124x41 endothelin_off00425
134x65 endothelin_off66.66670425
145x35 endothelin_off66.66670423
155x42 endothelin_off00424
165x44 endothelin_off66.66670536
175x57 endothelin_off33.33330537
185x64 endothelin_off00435
196x26 endothelin_off00434
206x44 endothelin_off1000439
216x62 endothelin_off33.33330512
227x45 endothelin_off33.33330439
237x49 endothelin_off00429
248x54 endothelin_off00427
251x31 Shared33.33330454
261x50 Shared050449
271x53 Shared33.33330649
282x46 Shared33.33330449
29E1x50 Shared10050759
30E1x52 Shared100100557
314x61 Shared10050555
32E2 Shared1001001393
335x46 Shared10050465
345x47 Shared66.666725448
355x58 Shared0100479
366x48 Shared100100678
376x52 Shared33.33330448
38E3 Shared100100581
397x35 Shared10050443
407x54 Shared00447
418x50 Shared66.666725659
42Lig Shared10010015170
43NT endothelin_on33.333350257
441x39 endothelin_on0100257
452x50 endothelin_on33.333375359
462x56 endothelin_on33.33330246
473x49 endothelin_on00348
483x51 endothelin_on050268
49I2x57 endothelin_on00246
504x64 endothelin_on00145
515x39 endothelin_on33.333325347
525x40 endothelin_on00145
535x61 endothelin_on00248
546x55 endothelin_on050346
557x23 endothelin_on33.333350345
   
Orange: nodes, hubs and links specific of endothelin_off network

Green: nodes, hubs and links shared by both networks

Purple: nodes, hubs and links specific of endothelin_on network

Index: link id, click on each number to highlight the corresponding link in the 3D visualization.

Node1 Node2: the two nodes of the corresponding link.

Owner: the name of the network the link belong to or "Shared" if the corresponding link is present in both networks.

Recurrence: the relative Recurrence in the filtered pool of shortest paths.

Hub1?, Hub2?: "Yes" if the corresponding node has more than 3 links, otherwise "No".

ConSurf1, ConSurf2: these columns report the ConSurf conservation grades of the two nodes involved in a link.


Index Node1 Node2 Owner endothelin_off Recurrence endothelin_on Recurrence endothelin_off Hub1? endothelin_on Hub1? endothelin_off Hub2? endothelin_on Hub2? ConSurf1 ConSurf2
16x62 7x27 endothelin_off11.48760YesNoNoNo23
26x62 7x23 endothelin_off22.35870YesNoNoYes25
37x23 7x24 endothelin_off27.17760NoYesNoNo58
41x35 2x64 endothelin_off20.91820YesNoNoNo54
52x60 2x64 endothelin_off34.69090NoNoNoNo74
62x63 Lig endothelin_off67.4750NoNoYesYes50
72x63 E1x50 endothelin_off66.4181.76269NoNoYesYes59
8E1x50 E2 endothelin_off46.44280YesYesYesYes93
9E2 NT endothelin_off29.78395.25651YesYesNoYes37
107x24 NT endothelin_off28.47820NoNoNoYes87
111x36 2x64 endothelin_off13.33230YesNoNoNo64
122x53 2x57 endothelin_off11.76740YesNoYesNo87
132x53 Lig endothelin_off33.50950YesNoYesYes80
141x42 7x42 endothelin_off10.06796.57722NoNoNoNo87
157x42 Lig endothelin_off11.71050NoNoYesYes70
162x46 7x49 endothelin_off44.55151.45751YesYesYesNo99
177x45 7x49 endothelin_off1000YesNoYesNo99
186x48 7x45 endothelin_off97.45068.61352YesYesYesNo89
196x48 Lig endothelin_off83.31520YesYesYesYes80
206x40 7x53 endothelin_off81.17529.80795NoNoNoNo89
216x40 7x49 endothelin_off81.75550NoNoYesNo89
228x50 8x54 endothelin_off20.27050YesYesYesNo97
237x53 8x50 endothelin_off72.34050NoNoYesYes99
241x54 2x48 endothelin_off11.0421.69955NoNoNoNo76
252x48 4x50 endothelin_off12.60170NoNoNoNo69
263x38 4x50 endothelin_off26.17238.08208NoNoNoNo79
273x38 4x53 endothelin_off29.0744.74612NoNoNoNo78
283x41 4x53 endothelin_off31.93430NoNoNoNo68
293x41 4x49 endothelin_off33.34891.69955NoNoNoNo67
303x42 4x49 endothelin_off34.75313.39384NoNoNoNo87
312x39 3x50 endothelin_off17.08380NoNoYesNo89
322x40 3x50 endothelin_off23.38460YesNoYesNo89
332x40 8x50 endothelin_off59.74920YesNoYesYes89
342x45 4x50 endothelin_off12.76230NoNoNoNo99
352x56 3x31 endothelin_off13.43590NoYesNoNo65
363x36 Lig endothelin_off33.04320NoNoYesYes70
373x36 5x461 endothelin_off43.41160NoNoNoNo76
383x48 5x57 endothelin_off25.48844.82505NoNoYesNo67
393x48 3x52 endothelin_off27.98070NoNoNoNo65
403x52 4x41 endothelin_off25.32260NoNoYesNo55
414x41 4x44 endothelin_off35.1780YesNoNoNo53
424x44 4x48 endothelin_off36.24020NoNoNoNo33
434x48 4x52 endothelin_off37.36460NoNoNoNo34
444x52 4x56 endothelin_off38.70674.30413NoNoNoNo45
454x56 5x42 endothelin_off21.26540NoNoYesNo54
465x42 5x461 endothelin_off21.21870YesNoNoNo46
474x56 5x46 endothelin_off19.43117.94528NoNoYesYes55
485x46 5x461 endothelin_off21.10990YesYesNoNo56
493x49 3x52 endothelin_off11.58091.61536NoYesNoNo85
502x39 3x49 endothelin_off14.86090NoNoNoYes88
515x68 6x30 endothelin_off26.69570NoNoNoNo57
525x64 5x68 endothelin_off37.97610YesNoNoNo55
535x64 I2x54 endothelin_off41.63430YesNoYesNo54
54I1x52 I2x54 endothelin_off44.63440NoNoYesNo84
552x40 I1x52 endothelin_off45.91431.36806YesNoNoNo88
564x60 5x35 endothelin_off10.74150NoNoYesNo83
574x61 5x35 endothelin_off11.22340YesYesYesNo53
585x44 6x56 endothelin_off11.33740YesNoNoNo66
595x44 6x52 endothelin_off16.55017.38753YesNoYesYes68
606x52 Lig endothelin_off15.49820YesYesYesYes80
615x47 6x52 endothelin_off12.87117.38753YesYesYesYes88
625x58 6x34 endothelin_off12.45660YesYesNoNo97
635x65 6x34 endothelin_off13.96960NoNoNoNo87
645x68 I2x50 endothelin_off10.16110NoNoNoNo58
658x47 8x50 endothelin_off15.44640NoNoYesYes89
667x54 8x54 endothelin_off11.13010YesYesYesNo77
672x60 Lig Shared35.996710.9761NoNoYesYes70
681x50 2x50 Shared11.264860.9208YesYesNoYes99
692x46 2x50 Shared10.15664.4041YesYesNoYes99
702x46 3x42 Shared36.146968.2768YesYesNoNo98
712x45 4x46 Shared11.202772.9703NoNoNoNo97
722x53 2x56 Shared15.073316.964YesNoNoYes86
73E1x50 E1x52 Shared11.529117.4112YesYesYesYes97
745x65 6x30 Shared18.436218.7845NoNoNoNo87
753x36 6x48 Shared11.529114.4173NoNoYesYes78
766x48 6x52 Shared15.674427.7716YesYesYesYes88
771x31 7x35 endothelin_on0.036271310.4394YesYesYesYes43
787x36 7x40 endothelin_on1.9120210.8761NoNoNoNo57
797x37 7x40 endothelin_on012.4336NoNoNoNo77
806x51 7x37 endothelin_on1.6995715.538NoNoNoNo67
816x48 6x51 endothelin_on084.1936YesYesNoNo86
822x53 6x48 endothelin_on012.9071YesNoYesYes88
832x56 7x42 endothelin_on025.6459NoYesNoNo67
842x57 7x42 endothelin_on020.4262YesNoNoNo77
851x43 2x57 endothelin_on5.0572612.7861NoNoYesNo77
866x51 7x38 endothelin_on077.1639NoNoNoNo66
872x56 2x60 endothelin_on011.7653NoYesNoNo67
882x64 7x35 endothelin_on014.6698NoNoYesYes43
891x27 2x64 endothelin_on015.8853NoNoNoNo54
901x27 7x31 endothelin_on3.3473217.1271NoNoNoNo53
917x31 Lig endothelin_on018.3636NoNoYesYes30
923x32 Lig endothelin_on1.5078511.2023NoNoYesYes60
932x56 3x32 endothelin_on010.8813NoYesNoNo66
94E2 Lig endothelin_on0100YesYesYesYes30
95E1x52 E2 endothelin_on098.3373YesYesYesYes73
963x24 E1x52 endothelin_on3.3732388.3767NoNoYesYes67
973x24 3x28 endothelin_on087.5664NoNoNoNo65
982x551 3x28 endothelin_on091.7916NoNoNoNo55
992x551 3x31 endothelin_on3.4561489.8448NoNoNoNo55
1003x30 3x31 endothelin_on8.5444886.8456YesNoNoNo65
1013x30 4x54 endothelin_on1.7254884.7935YesNoNoNo63
1024x50 4x54 endothelin_on082.6993NoNoNoNo93
1034x46 4x50 endothelin_on076.3799NoNoNoNo79
1042x45 3x42 endothelin_on071.8127NoNoNoNo98
1051x50 2x47 endothelin_on4.2126557.1008YesYesNoNo99
1061x53 2x47 endothelin_on4.6064655.8064YesYesNoNo99
1071x53 1x57 endothelin_on3.7566713.3386YesYesNoNo97
1081x53 7x54 endothelin_on015.3223YesYesYesYes97
1091x53 8x50 endothelin_on9.5497228.3346YesYesYesYes99
1101x57 2x44 endothelin_on1.8809311.7074NoNoNoNo77
1118x50 I1x50 endothelin_on4.7411813.7174YesYesYesNo97
1126x44 6x48 endothelin_on4.0986679.2791YesNoYesYes98
1135x54 6x44 endothelin_on080.8682NoNoYesNo89
1145x54 5x58 endothelin_on078.6635NoNoYesYes89
1153x50 5x58 endothelin_on031.5759YesNoYesYes99
1163x46 3x50 endothelin_on030.4657NoNoYesNo99
1172x42 3x46 endothelin_on1.4197629.1134NoNoNoNo79
1182x42 3x49 endothelin_on026.5404NoNoNoYes78
1192x38 3x49 endothelin_on015.7169NoNoNoYes78
1202x38 4x42 endothelin_on012.6651NoNoNoNo77
1212x43 7x54 endothelin_on013.0439NoNoYesYes87
1222x43 7x53 endothelin_on011.4496NoNoNoNo89
1232x54 2x57 endothelin_on011.2286NoNoYesNo67
1244x61 Lig endothelin_on010.6919YesYesYesYes50
1253x36 5x46 endothelin_on013.1544NoNoYesYes75
1265x46 5x49 endothelin_on1.6684812.8913YesYesNoNo56
1275x46 6x52 endothelin_on013.8806YesYesYesYes58
1285x58 5x61 endothelin_on044.7777YesYesNoYes98
1293x51 5x61 endothelin_on024.6619NoYesNoYes88
1306x55 Lig endothelin_on6.4925616.5588NoYesYesYes60
1315x40 6x55 endothelin_on017.0008NoYesNoYes56
1325x39 5x40 endothelin_on028.2031NoYesNoYes75
1334x60 5x39 endothelin_on011.8495NoNoNoYes87
1345x36 Lig endothelin_on016.3641NoNoYesYes40
1355x36 5x40 endothelin_on015.2276NoNoNoYes45
136E3 Lig endothelin_on022.4572YesYesYesYes10
1376x57 E3 endothelin_on015.5748NoNoYesYes51
1386x57 6x61 endothelin_on014.1489NoNoNoNo53
1396x60 6x61 endothelin_on1.9120212.3704NoNoNoNo43
1405x43 5x46 endothelin_on018.5741NoNoYesYes65
1415x61 5x65 endothelin_on3.1763320.3052NoYesNoNo88
1426x26 6x30 endothelin_on7.891612.7966YesNoNoNo47
143E1x50 E1x51 endothelin_on4.932910.6972YesYesNoNo92
1447x38 Lig endothelin_on1.6995776.1589NoNoYesYes60
1455x39 5x43 endothelin_on4.73620.763NoYesNoNo76

Here, those paths that begin and end at given residue pair(s) or that pass through a residue are used to generate a novel metapath. Such a path filtering is particularly recommended if some information on allosteric residues is available. The selection syntax for a residue pair ("Pairs") is C:C:c534,A:A:?600 (the lower-case "c" stands for cytosine and "?" indicates any non standard amino acid or nucleotide residue). Selection of more than one apical residue pair has the following syntax: C:C:c534,A:A:?600,C:C:c534,A:A:E41. Only one residue can be selected as a tail ("Tail"). For midway residue(s), each residue must be separated by a comma as well e.g. A:A:?600,A:A:E41.

Midway



Download PSN data

2D representation of the global metapath, ligand(s) interactions and
histograms of path distribution according to several parameters
(click on the image to enlarge it 🔍):

A 2D representation of the global communication in the network.

Number of shortest communication paths as a function of the average residue correlation.

Number of shortest communication paths as a function of the average interaction strength of their links.

Number of shortest communication paths as a function of the % of hub nodes in each path.

Number of shortest communication paths as a function of the number of nodes in each path.

Number of shortest communication paths as a function of the % of correlated nodes in each path.


2D representation of the interactions of this orthosteric/allosteric ligand.


Node1Node2OwnerNet1LinkStrengthNet2LinkStrengthComm1Comm2Node1ShellNode2Shell
1x247x27endothelin_off4.3766700121
1x277x31Shared3.806670.7150021
1x32E1endothelin_off3.600021
1x427x42Shared5.383333.94750021
2x532x56Shared8.673336.00751012
2x533x32endothelin_off5.7701011
2x533x35Shared5.114.27251012
2x537x46endothelin_off5.1133301012
2x53Ligendothelin_off11.4301010
2x60LigShared5.927.8350110
2x63E1x50Shared6.964.84750012
E1x49E2endothelin_off16.9500021
E1x50E1x52Shared13.36339.64752122
E1x50E2x50Shared8.7066712.63252122
3x26E2endothelin_off5.9933300021
3x294x61Shared5.763335.48251111
3x294x65Shared15.414.011111
3x29Ligendothelin_off4.9466701110
3x323x33endothelin_off8.1366701111
3x32LigShared20.86334.5751110
3x334x61Shared11.77.8851111
3x335x43endothelin_off4.701111
3x33LigShared14.275.69751110
3x365x461endothelin_off4.2066701012
3x366x48Shared6.955.5151011
3x36Ligendothelin_off4.6833301010
4x614x65endothelin_off7.7733301111
4x615x35endothelin_off8.9766701112
4x615x39endothelin_off8.5501112
4x64E2endothelin_off4.3833300121
4x65E2x52Shared7.713337.691012
4x65Ligendothelin_off4.3101010
E2E2Shared75.536761.5452111
E2E2x50endothelin_off5.4566702112
E2E2x51Shared9.0411.06252111
5x32E2Shared10.87672.4252121
5x33E2endothelin_off6.9302021
5x29E2endothelin_off4.0033300021
5x355x39Shared11.14674.7751022
5x355x42endothelin_off4.1801022
5x395x43Shared5.648.10751021
5x425x46Shared14.037.031222
5x425x461endothelin_off4.1801222
5x43Ligendothelin_off9.3966701210
5x445x47Shared6.075.50251222
5x446x52Shared8.296675.7851221
5x465x461endothelin_off13.063301222
5x476x52Shared17.34679.16751221
6x446x48Shared14.69675.261221
6x447x45Shared6.043.6251222
6x486x52Shared6.346674.06751211
6x487x41Shared8.646677.321212
6x487x45Shared6.785.4551212
6x48Ligendothelin_off13.201210
6x517x37Shared3.993.0651012
6x51Ligendothelin_off5.7833301010
6x52Ligendothelin_off4.9366701210
6x547x34Shared4.116675.2250021
6x55LigShared9.9233311.49251110
6x62E3Shared10.90674.726021
6x627x27endothelin_off9.7666706021
E3E3Shared19.513311.62756111
7x23E3Shared9.423.7156121
7x25E3endothelin_off7.8866700021
7x317x35endothelin_off7.4233300112
7x38LigShared8.036.240110
2x63Ligendothelin_off5.0533300010
E1x50E2endothelin_off4.3066702121
6x516x55endothelin_off4.0501011
6x557x34Shared9.134.171111
6x627x23endothelin_off5.4866706022
E2NTShared6.2633312.7452112
2x532x57endothelin_off3.5333301012
6x586x62endothelin_off3.1833300112
6x627x26endothelin_off3.1266706022
2x602x64endothelin_off2.7466700112
3x22E2endothelin_off2.6233300021
7x42Ligendothelin_off2.1400010
5x36E2x52endothelin_off1.5766700112
2x562x60endothelin_on04.43250021
2x563x32endothelin_on012.6250021
2x567x42endothelin_on03.69750021
2x577x42endothelin_on06.24251021
2x607x38endothelin_on04.20250111
4x61Ligendothelin_on06.87751110
4x64E2x52endothelin_on09.28250122
E2Ligendothelin_on028.16752110
E2x51Ligendothelin_on011.3450110
E2E2x52endothelin_on03.6552112
5x365x40endothelin_on04.01750112
5x395x40endothelin_on04.08751022
5x425x43endothelin_on03.80251221
6x486x51endothelin_on04.021211
6x517x38endothelin_on03.92251011
6x57E3endothelin_on012.91750121
6x58E3endothelin_on06.80750111
6x58Ligendothelin_on013.7050110
E3Ligendothelin_on015.1356110
7x34Ligendothelin_on019.480110
E1x52E2endothelin_on03.6252121
3x294x64endothelin_on06.24251112
4x614x64endothelin_on06.45251112
5x406x55endothelin_on05.12750021
5x36Ligendothelin_on05.7750110
7x31Ligendothelin_on06.990110
NTNTendothelin_on03.8252122
1x24NTendothelin_on03.9450122
7x23NTendothelin_on04.186122
2x536x48endothelin_on03.3751011
2x647x35endothelin_on011.1350022
3x365x46endothelin_on06.311012
5x435x46endothelin_on05.861212
5x466x52endothelin_on04.3551221
6x556x58endothelin_on06.8051111
7x26E3endothelin_on03.4350121
4x574x61endothelin_on03.29250021
7x27Ligendothelin_on03.150110
2x67E2endothelin_on02.920021
1x267x27endothelin_on02.820021
3x223x26endothelin_on02.66750022
7x237x25endothelin_on01.7456122
E1Ligendothelin_on01.650010
5x295x32endothelin_on01.5350022
1x272x64endothelin_on00.7150022

Location and physicochemical properties of the interaction partners of this ligand

Interactions of this ligand

Difference Members
Id Description
endothelin_off etb_off
endothelin_on etb_on
eta_on
Network Difference
Value endothelin_off endothelin_on
Imin 3.56333 3.345
Number of Linked Nodes 280 291
Number of Specific Nodes 6 (2.14%) 17  (5.84%)
Number of Shared Nodes 274 (97.86%) 274  (94.16%)
Number of Links 317 319
Number of Specific Links 178 (56.15%) 180  (56.43%)
Number of Shared Links 139 (43.85%) 139  (43.57%)
Number of Hubs 42 31
Number of Specific Hubs 24 (57.14%) 13  (41.94%)
Number of Shared Hubs 18 (42.86%) 18  (58.06%)
Average % Shared Neighbours (Jaccard) 29.97
Average % Shared Neighbours (Otsuka) 39.77
Average % Shared Neighbours (Overlap Coefficient) 49.41
Average % Shared Cliques (k3-6) 77.03
Graphlets Similarity 0.595843
Paths Difference
Value endothelin_off endothelin_on
Number Of Nodes in MetaPath 74 75
Specific Nodes in MetaPath 42 (56.76%) 43  (57.33%)
Shared Nodes in MetaPath 274 (97.86%) 274  (97.86%)
Number Of Links MetaPath 76 79
Specific Links in MetaPath 66 (86.84%) 69  (87.34%)
Shared Links in MetaPath 139 (43.85%) 139  (43.85%)
Number of Shortest Paths 49849 47740
Length Of Smallest Path 3 3
Average Path Length 12.8581 15.101
Length of Longest Path 33 43
Minimum Path Strength 0.551667 0.7575
Average Path Strength 5.89283 5.58204
Maximum Path Strength 17.0317 23.8237
Minimum Path Correlation 0.7 0.7
Average Path Correlation 0.930451 0.920527
Maximum Path Correlation 0.99 0.99
Minimum % Of Corr. Nodes 4 2.7027
Average % Of Corr. Nodes 50.905 44.356
Maximum % Of Corr. Nodes 100 100
Minimum Path Hubs % 0 0
Average Path Hubs % 43.7098 34.9231
Maximum Path Hubs % 100 100

Details about the values in these tables can be found in the corresponding documentation page .

You can download a compressed (zip) file with structure(s), 3D outputs (as PyMol and VMD scripts) and numerical data files (as csv and plain text files).

Download endothelin_off_on.zip<



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