Orange: nodes, hubs and links specific of ghrelin_off network

Green: nodes, hubs and links shared by both networks

Purple: nodes, hubs and links specific of ghrelin_on network

Index: hub id, click on each number to highlight the corresponding hub in the 3D visualization.

Hub: the hub being considered.

Owner: the name of the network the hub belong to or "Shared" if the corresponding hub is present in both networks.

Avg Int. Strength: the average interaction strength of all the links of the corresponding hub in the corresponding network.

Num Of Links: the number of links of the corresponding hub in the corresponding network.

ConSurf: this column reports the ConSurf conservation grades of each hub.


Index Hub Owner ghrelin_off Avg Int. Strength ghrelin_on Avg Int. Strength ghrelin_off Num Of Links ghrelin_on Num Of Links ConSurf
12x66 ghrelin_off00514
2E1x49 ghrelin_off00524
33x29 ghrelin_off5066.6667434
43x30 ghrelin_off00436
53x39 ghrelin_off5033.3333429
63x50 ghrelin_off500429
7E2x52 ghrelin_off500524
85x47 ghrelin_off10033.3333538
95x66 ghrelin_off00424
106x58 ghrelin_off00424
111x60 Shared5033.3333555
122x42 Shared100100758
132x54 Shared100100646
142x57 Shared033.3333547
152x60 Shared10033.3333446
162x63 Shared5033.3333445
172x65 Shared00444
18E1x50 Shared5066.6667447
193x28 Shared10066.6667454
203x51 Shared100100568
213x52 Shared00445
225x54 Shared5033.3333448
235x58 Shared50100459
246x44 Shared10066.6667459
256x48 Shared100100768
266x51 Shared10066.6667456
276x55 Shared0100546
287x38 Shared1000565
297x41 Shared50100557
307x42 Shared100100557
317x53 Shared10066.6667559
328x50 Shared10033.3333458
33Lig Shared10010010230
342x50 ghrelin_on066.6667349
352x52 ghrelin_on00347
363x33 ghrelin_on066.6667344
373x43 ghrelin_on033.3333248
383x56 ghrelin_on00246
394x50 ghrelin_on5033.3333349
40E2.T195 ghrelin_on00343
41E2x51 ghrelin_on00343
425x39 ghrelin_on033.3333245
435x40 ghrelin_on00345
445x50 ghrelin_on033.3333249
456x31 ghrelin_on00245
467x52 ghrelin_on00248
   
Orange: nodes, hubs and links specific of ghrelin_off network

Green: nodes, hubs and links shared by both networks

Purple: nodes, hubs and links specific of ghrelin_on network

Index: link id, click on each number to highlight the corresponding link in the 3D visualization.

Node1 Node2: the two nodes of the corresponding link.

Owner: the name of the network the link belong to or "Shared" if the corresponding link is present in both networks.

Recurrence: the relative Recurrence in the filtered pool of shortest paths.

Hub1?, Hub2?: "Yes" if the corresponding node has more than 3 links, otherwise "No".

ConSurf1, ConSurf2: these columns report the ConSurf conservation grades of the two nodes involved in a link.


Index Node1 Node2 Owner ghrelin_off Recurrence ghrelin_on Recurrence ghrelin_off Hub1? ghrelin_on Hub1? ghrelin_off Hub2? ghrelin_on Hub2? ConSurf1 ConSurf2
1NT.F38 NT.Q36 ghrelin_off13.83210NoNoNoNo45
22x66 NT.Q36 ghrelin_off14.77450YesNoNoNo45
32x65 2x66 ghrelin_off18.74781.97628YesYesYesNo44
41x36 2x65 ghrelin_off21.64171.97628NoNoYesYes64
51x36 2x61 ghrelin_off22.47470NoNoNoNo67
62x61 7x38 ghrelin_off23.12390NoNoYesYes75
72x57 7x42 ghrelin_off10.6379.39591YesYesYesYes77
82x54 7x46 ghrelin_off12.51429.10025YesYesNoNo69
92x50 7x46 ghrelin_off12.06848.84815NoYesNoNo99
106x48 Lig ghrelin_off86.32830YesYesYesYes80
113x39 6x44 ghrelin_off58.51160YesNoYesYes99
123x39 7x49 ghrelin_off30.26480YesNoNoNo99
137x49 7x53 ghrelin_off28.00440NoNoYesYes99
147x53 8x50 ghrelin_off13.78120YesYesYesYes98
157x54 8x50 ghrelin_off12.28748.76101NoNoYesYes78
167x54 8x51 ghrelin_off10.95770NoNoNoNo78
172x46 3x42 ghrelin_off81.63151.37562NoNoNoNo98
182x42 3x42 ghrelin_off80.93540YesYesNoNo88
192x39 3x46 ghrelin_off58.10880NoNoNoNo88
202x39 3x50 ghrelin_off44.32760NoNoYesNo89
21E1x49 E1x50 ghrelin_off49.69693.86543YesNoYesYes47
222x59 E1x50 ghrelin_off59.97030NoNoYesYes57
232x59 3x28 ghrelin_off61.56197.14575NoNoYesYes54
242x63 3x28 ghrelin_off34.17543.99303YesYesYesYes54
253x28 3x29 ghrelin_off31.80163.22741YesYesYesNo44
263x33 6x55 ghrelin_off16.69865.00763NoYesYesYes46
273x33 3x37 ghrelin_off13.93387.41963NoYesNoNo46
283x46 6x37 ghrelin_off11.75160NoNoNoNo88
295x58 6x37 ghrelin_off10.47671.37251YesYesNoNo98
303x50 6x30 ghrelin_off38.19170YesNoNoNo96
313x54 6x30 ghrelin_off37.46430NoNoNoNo96
323x54 5x61 ghrelin_off29.81891.59036NoNoNoNo98
333x51 5x61 ghrelin_off27.51166.33345YesYesNoNo88
343x51 3x52 ghrelin_off10.02317.56279YesYesYesYes85
352x67 E1x49 ghrelin_off46.39630NoNoYesNo34
362x67 E2.E197 ghrelin_off42.69680.0280103NoNoNoNo34
37E2.E197 E2.T195 ghrelin_off14.77850NoNoNoYes43
38E2x51 E2x52 ghrelin_off17.03493.85609NoYesYesNo34
395x40 6x55 ghrelin_off17.56290NoYesYesYes56
405x40 6x59 ghrelin_off14.78243.86231NoYesNoNo54
415x47 6x48 ghrelin_off13.71870YesNoYesYes88
426x36 7x53 ghrelin_off11.75160NoNoYesYes89
436x36 7x56 ghrelin_off10.47671.42853NoNoNoNo87
446x59 6x60 ghrelin_off13.27680NoNoNoNo44
453x29 Lig ghrelin_off38.06267.57213YesNoYesYes40
462x54 7x42 Shared19.181915.1629YesYesYesYes67
477x38 Lig Shared20.980815.1567YesYesYesYes50
486x44 6x48 Shared100100YesYesYesYes98
497x41 7x42 Shared14.469537.3378YesYesYesYes77
502x53 7x41 Shared11.915844.6889NoNoYesYes77
512x53 3x35 Shared10.453243.2293NoNoNoNo78
523x43 6x44 Shared83.000357.7947NoYesYesYes89
532x46 3x43 Shared82.319817.0676NoNoNoYes98
542x42 3x46 Shared66.98649.1426YesYesNoNo88
552x37 2x39 Shared16.772920.1176NoNoNoNo78
562x37 2x40 Shared15.529318.7389NoNoNoNo78
572x40 I1x50 Shared14.277913.1617NoNoNoNo88
581x60 I1x50 Shared10.476710.6221YesYesNoNo58
592x42 4x42 Shared10.187319.9745YesYesNoNo87
602x49 3x39 Shared26.440111.1917NoNoYesNo89
612x49 4x50 Shared25.259143.2293NoNoNoYes89
624x50 4x54 Shared21.669134.7484NoYesNoNo94
633x30 4x54 Shared17.899231.3124YesNoNoNo64
646x55 Lig Shared31.87649.043YesYesYesYes60
653x37 5x46 Shared12.416413.1431NoNoNoNo66
66E2.E197 E2x51 Shared26.772521.7765NoNoNoYes43
672x63 Lig Shared30.694914.3195YesYesYesYes50
682x50 3x39 Shared14.094112.0071NoYesYesNo99
696x48 7x41 Shared14.461724.5433YesYesYesYes87
701x32 2x64 ghrelin_on019.1155NoNoNoNo54
712x64 Lig ghrelin_on013.6473NoNoYesYes40
727x31 Lig ghrelin_on015.9628NoNoYesYes30
737x28 7x31 ghrelin_on014.3911NoNoNoNo03
747x28 7x32 ghrelin_on1.0050412.4988NoNoNoNo01
757x32 NT.F38 ghrelin_on010.5941NoNoNoNo14
761x32 2x65 ghrelin_on1.1771111.7799NoNoYesYes54
777x48 7x52 ghrelin_on2.6631720.376NoNoNoYes78
786x40 7x52 ghrelin_on024.4094NoNoNoYes88
796x40 7x53 ghrelin_on025.6232NoNoYesYes89
803x43 7x53 ghrelin_on073.4151NoYesYesYes89
816x48 6x51 ghrelin_on081.7653YesYesYesYes86
826x51 6x55 ghrelin_on3.9067754.2591YesYesYesYes66
836x51 7x37 ghrelin_on044.6018YesYesNoNo67
847x37 Lig ghrelin_on1.4313144.3341NoNoYesYes70
852x60 7x42 ghrelin_on7.0118520.8459YesYesYesYes67
862x60 Lig ghrelin_on3.2067616.7408YesYesYesYes60
877x38 7x42 ghrelin_on8.5761222.6821YesYesYesYes57
882x43 7x54 ghrelin_on011.562NoNoNoNo87
892x43 7x53 ghrelin_on1.3296312.9065NoNoYesYes89
906x51 7x41 ghrelin_on3.4492221.2225YesYesYesYes67
912x39 3x49 ghrelin_on021.4839NoNoNoNo89
922x42 3x49 ghrelin_on6.9727426.9179YesYesNoNo89
933x46 7x53 ghrelin_on050.3377NoNoYesYes89
942x49 3x35 ghrelin_on034.4527NoNoNoNo88
952x50 7x49 ghrelin_on015.5426NoYesNoNo99
96E2.E197 Lig ghrelin_on023.3202NoNoYesYes40
973x22 3x26 ghrelin_on3.9849820.8552NoNoNoNo47
983x26 4x62 ghrelin_on5.2989724.3659NoNoNoNo75
993x30 4x62 ghrelin_on7.9034827.8516YesNoNoNo65
1003x22 E2.V184 ghrelin_on1.3335419.0906NoNoNoNo45
1015x54 6x44 ghrelin_on038.7912YesYesYesYes89
1023x47 5x54 ghrelin_on046.8053NoNoYesYes98
1033x47 5x57 ghrelin_on054.2NoNoNoNo97
1043x51 5x57 ghrelin_on5.2989750.1105YesYesNoNo87
1053x51 3x55 ghrelin_on8.3180224.4499YesYesNoNo87
1065x39 Lig ghrelin_on015.0633NoYesYesYes50
107E2.N196 E2.V184 ghrelin_on017.3197NoNoNoNo45
108E2.E185 E2x51 ghrelin_on8.0833813.0528NoNoNoYes13
109E2.H186 E2.N196 ghrelin_on015.5426NoNoNoNo24
1105x40 Lig ghrelin_on020.7245NoYesYesYes50
1116x51 6x52 ghrelin_on2.3620520.404YesYesNoNo67
1125x47 6x52 ghrelin_on1.1575618.7234YesNoNoNo87
1135x47 6x49 ghrelin_on8.2319813.6908YesNoNoNo86
1143x55 5x64 ghrelin_on7.0274923.1583NoNoNoNo75
1155x64 5x68 ghrelin_on021.8947NoNoNoNo55
1165x68 6x30 ghrelin_on020.6841NoNoNoNo56
1175x69 6x26 ghrelin_on015.2221NoNoNoNo35
1186x26 6x30 ghrelin_on016.4514NoNoNoNo56
1197x55 7x56 ghrelin_on3.9849810.7466NoNoNoNo67
1207x51 7x55 ghrelin_on2.6631712.1409NoNoNoNo66
1217x48 7x51 ghrelin_on013.529NoNoNoNo76
1227x34 Lig ghrelin_on011.4095NoNoYesYes40
1235x40 6x56 ghrelin_on013.4169NoYesNoNo55
1246x56 6x60 ghrelin_on3.148111.5185NoNoNoNo54
1254x41 I2x56 ghrelin_on3.5782710.2549NoNoNoNo54
126I2x56 I2x57 ghrelin_on013.1306NoNoNoNo47
1274x42 I2x57 ghrelin_on014.2261NoNoNoNo77
1286x49 6x50 ghrelin_on4.1492310.3047NoNoNoNo69
1292x46 7x49 ghrelin_on015.3123NoNoNoNo99
1303x43 5x54 ghrelin_on013.6348NoYesYesYes88

Here, those paths that begin and end at given residue pair(s) or that pass through a residue are used to generate a novel metapath. Such a path filtering is particularly recommended if some information on allosteric residues is available. The selection syntax for a residue pair ("Pairs") is C:C:c534,A:A:?600 (the lower-case "c" stands for cytosine and "?" indicates any non standard amino acid or nucleotide residue). Selection of more than one apical residue pair has the following syntax: C:C:c534,A:A:?600,C:C:c534,A:A:E41. Only one residue can be selected as a tail ("Tail"). For midway residue(s), each residue must be separated by a comma as well e.g. A:A:?600,A:A:E41.

Midway



Download PSN data

2D representation of the global metapath, ligand(s) interactions and
histograms of path distribution according to several parameters
(click on the image to enlarge it 🔍):

A 2D representation of the global communication in the network.

Number of shortest communication paths as a function of the average residue correlation.

Number of shortest communication paths as a function of the average interaction strength of their links.

Number of shortest communication paths as a function of the % of hub nodes in each path.

Number of shortest communication paths as a function of the number of nodes in each path.

Number of shortest communication paths as a function of the % of correlated nodes in each path.


2D representation of the interactions of this orthosteric/allosteric ligand.


Node1Node2OwnerNet1LinkStrengthNet2LinkStrengthComm1Comm2Node1ShellNode2Shell
2x537x41Shared6.285.443330021
2x602x63ghrelin_off8.3401111
2x607x38Shared12.548.361111
2x607x42Shared7.4754.61112
2x60LigShared20.9754.693331110
2x617x38ghrelin_off4.2600021
2x633x28Shared4.2753.206671112
2x633x29ghrelin_off5.25501111
2x63LigShared16.3756.196671110
2x647x38Shared13.3954.463330111
2x66E1x49ghrelin_off6.31500022
3x283x29Shared5.8558.586671021
3x294x65Shared4.39.073331112
3x29LigShared10.8516.30331110
3x32Ligghrelin_off6.52500010
3x333x37Shared7.869.353330112
3x334x61Shared6.8355.466670111
3x336x55Shared5.8158.920111
3x366x48Shared7.883.236670121
3x406x44ghrelin_off5.24500022
4x605x39Shared8.3853.353330021
E2.E197E2x51Shared8.7256.980112
5x395x42Shared4.5652.030112
5x406x59Shared4.853.230112
5x476x48ghrelin_off5.01501021
5x476x52Shared22.0611.691022
6x446x48Shared7.51512.02670121
6x477x45Shared4.35.740022
6x486x52ghrelin_off11.10501112
6x487x41Shared7.5154.676671111
6x487x45ghrelin_off4.9401112
6x516x52Shared10.186.791112
6x516x55Shared9.0859.976671111
6x517x41Shared6.434.286671111
6x51Ligghrelin_off5.0501110
6x55LigShared16.6819.461110
6x58E3.F290Shared4.2855.366111
7x317x32ghrelin_off7.32500112
7x387x42Shared9.28511.69331112
7x38LigShared4.6357.241110
7x417x42Shared8.7659.631112
7x41Ligghrelin_off18.1901110
NT.F38NT.Q36ghrelin_off3.51500021
2x66NT.Q36ghrelin_off4.4800021
7x31NT.L37ghrelin_off5.32500112
7x31NT.F38ghrelin_off3.51500112
2x67E1x49ghrelin_off13.2100112
E1x49E1x50Shared12.162.703330022
5x406x55ghrelin_off5.88500111
6x48Ligghrelin_off9.7301110
6x587x30ghrelin_off3.96506112
7x287x32Shared3.382.626670022
5x436x55Shared3.2955.710021
4x64E2.A204ghrelin_off3.15500112
4x644x65ghrelin_off2.9800112
E2x51E2x52Shared2.882.880022
E2.E197E2.T195ghrelin_off2.8200112
2x67E2.E197Shared2.8055.236670111
2x563x28Shared2.7952.326670022
6x587x29ghrelin_off2.5106112
7x37LigShared2.2653.776670110
7x307x34Shared2.2353.476670021
6x58E2x52ghrelin_off2.16506112
E2x52E3.F290ghrelin_off2.16506021
4x645x35ghrelin_off2.07500112
E3.L295NT.L37ghrelin_off2.07500012
2x622x67ghrelin_off1.89500021
5x405x44ghrelin_off1.6200112
E2.V205E2x52ghrelin_off0.88500022
6x61E3.I297ghrelin_off0.77500112
1x322x64ghrelin_on03.230021
2x603x28ghrelin_on05.176671112
2x63E1x50ghrelin_on071112
2x64Ligghrelin_on06.723330110
2x67Ligghrelin_on06.920110
3x33Ligghrelin_on012.87330110
3x367x41ghrelin_on05.190121
3x375x43ghrelin_on04.243330022
3x406x48ghrelin_on04.086670021
4x61Ligghrelin_on04.026670110
4x645x39ghrelin_on05.183330111
4x64Ligghrelin_on05.580110
E2.E197Ligghrelin_on03.353330110
E2.V205E3.F290ghrelin_on09.173330021
5x39Ligghrelin_on05.746670110
5x405x41ghrelin_on03.680112
5x436x52ghrelin_on05.576670022
6x486x51ghrelin_on09.353331111
6x517x37ghrelin_on03.521111
6x547x34ghrelin_on04.523330021
6x58Ligghrelin_on016.06336110
6x61Ligghrelin_on03.896670110
E3.F290Ligghrelin_on03.116676110
E3.L295Ligghrelin_on03.106670010
7x31Ligghrelin_on08.306670110
7x34Ligghrelin_on018.49330110
5x35E2.A204ghrelin_on03.153330022
2x563x32ghrelin_on02.866670021
NT.F38NT.L37ghrelin_on02.843330022
1x397x38ghrelin_on02.790021
6x476x48ghrelin_on02.613330021
7x287x31ghrelin_on02.560021
7x32NT.F38ghrelin_on02.406670022
5x40Ligghrelin_on02.406670110
LigNT.Q36ghrelin_on02.326671101
5x406x56ghrelin_on02.103330112
2x622x63ghrelin_on01.743330021
7x387x39ghrelin_on01.311112
6x617x27ghrelin_on01.140112

Location and physicochemical properties of the interaction partners of this ligand

Interactions of this ligand

Difference Members
Id Description
ghrelin_off 6KO5-Ghrelin-PubChem 57400002
7F83-Ghrelin-PF-05190457
ghrelin_on 7W2Z-Ghrelin-Ghrelin-Go/&β;1/&γ;2
7F9Z-Ghrelin-GHRP-6-chim(NtGi1-Gs-CtGq)/&β;1/&γ;2
7NA8-Ghrelin-PubChem 178024-Gi1/&β;1/&γ;2
Network Difference
Value ghrelin_off ghrelin_on
Imin 3.515 3.10333
Number of Linked Nodes 295 297
Number of Specific Nodes 6 (2.03%) 8  (2.69%)
Number of Shared Nodes 289 (97.97%) 289  (97.31%)
Number of Links 315 327
Number of Specific Links 134 (42.54%) 146  (44.65%)
Number of Shared Links 181 (57.46%) 181  (55.35%)
Number of Hubs 33 36
Number of Specific Hubs 10 (30.30%) 13  (36.11%)
Number of Shared Hubs 23 (69.70%) 23  (63.89%)
Average % Shared Neighbours (Jaccard) 43.36
Average % Shared Neighbours (Otsuka) 52.80
Average % Shared Neighbours (Overlap Coefficient) 61.86
Average % Shared Cliques (k3-6) 76.67
Graphlets Similarity 0.601454
Paths Difference
Value ghrelin_off ghrelin_on
Number Of Nodes in MetaPath 68 81
Specific Nodes in MetaPath 26 (38.24%) 39  (48.15%)
Shared Nodes in MetaPath 289 (97.97%) 289  (97.97%)
Number Of Links MetaPath 69 85
Specific Links in MetaPath 45 (65.22%) 61  (71.76%)
Shared Links in MetaPath 181 (57.46%) 181  (57.46%)
Number of Shortest Paths 54220 79416
Length Of Smallest Path 3 3
Average Path Length 14.099 13.0509
Length of Longest Path 33 33
Minimum Path Strength 0.7 0.593333
Average Path Strength 6.464 5.87982
Maximum Path Strength 19.5825 15.9767
Minimum Path Correlation 0.7 0.7
Average Path Correlation 0.920231 0.918898
Maximum Path Correlation 0.99 0.99
Minimum % Of Corr. Nodes 3.33333 3.7037
Average % Of Corr. Nodes 45.9246 44.1268
Maximum % Of Corr. Nodes 100 100
Minimum Path Hubs % 0 0
Average Path Hubs % 40.7687 43.1658
Maximum Path Hubs % 100 100

Details about the values in these tables can be found in the corresponding documentation page .

You can download a compressed (zip) file with structure(s), 3D outputs (as PyMol and VMD scripts) and numerical data files (as csv and plain text files).

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