Orange: nodes, hubs and links specific of hca2_on_allo network

Green: nodes, hubs and links shared by both networks

Purple: nodes, hubs and links specific of hca2_on network

Index: hub id, click on each number to highlight the corresponding hub in the 3D visualization.

Hub: the hub being considered.

Owner: the name of the network the hub belong to or "Shared" if the corresponding hub is present in both networks.

Avg Int. Strength: the average interaction strength of all the links of the corresponding hub in the corresponding network.

Num Of Links: the number of links of the corresponding hub in the corresponding network.

ConSurf: this column reports the ConSurf conservation grades of each hub.


Index Hub Owner hca2_on_allo Avg Int. Strength hca2_on Avg Int. Strength hca2_on_allo Num Of Links hca2_on Num Of Links ConSurf
1NT.K16 hca2_on_allo1000414
21x27 hca2_on_allo5020433
31x31 hca2_on_allo010425
41x42 hca2_on_allo050437
51x57 hca2_on_allo10040527
62x40 hca2_on_allo500437
72x46 hca2_on_allo5050429
82x60 hca2_on_allo5030536
9E1x52 hca2_on_allo00427
103x30 hca2_on_allo10050436
113x32 hca2_on_allo5030436
123x36 hca2_on_allo10040538
133x42 hca2_on_allo5050438
144x50 hca2_on_allo010439
154x59 hca2_on_allo500427
16E2x52 hca2_on_allo5030434
175x33 hca2_on_allo10020433
185x40 hca2_on_allo10060425
195x41 hca2_on_allo10040534
206x59 hca2_on_allo1000435
217x25 hca2_on_allo00432
227x32 hca2_on_allo00421
237x47 hca2_on_allo00428
248x50 hca2_on_allo10020429
25Alloh56 hca2_on_allo1000800
262x44 Shared5030446
272x50 Shared10060549
282x64 Shared10090556
29E1.W91 Shared10080744
30E1x50 Shared10090669
313x34 Shared10060555
323x37 Shared10030447
333x51 Shared100100677
343x52 Shared5030565
353x55 Shared5060448
363x56 Shared00447
37E2.L176 Shared10030544
38E2.F180 Shared10060743
395x47 Shared10090558
405x60 Shared020444
416x44 Shared10050449
426x48 Shared10090448
436x55 Shared10090445
447x27 Shared5080552
457x34 Shared100100454
467x42 Shared10090857
477x49 Shared10080449
487x53 Shared100100869
497x54 Shared10090777
50Lig Shared100906120
511x26 hca2_on050342
521x60 hca2_on00345
532x66 hca2_on00344
543x35 hca2_on030349
554x46 hca2_on00248
564x53 hca2_on00347
57E2x51 hca2_on00244
585x461 hca2_on020345
595x51 hca2_on010347
605x65 hca2_on00348
616x36 hca2_on030247
627x50 hca2_on030349
   
Orange: nodes, hubs and links specific of hca2_on_allo network

Green: nodes, hubs and links shared by both networks

Purple: nodes, hubs and links specific of hca2_on network

Index: link id, click on each number to highlight the corresponding link in the 3D visualization.

Node1 Node2: the two nodes of the corresponding link.

Owner: the name of the network the link belong to or "Shared" if the corresponding link is present in both networks.

Recurrence: the relative Recurrence in the filtered pool of shortest paths.

Hub1?, Hub2?: "Yes" if the corresponding node has more than 3 links, otherwise "No".

ConSurf1, ConSurf2: these columns report the ConSurf conservation grades of the two nodes involved in a link.


Index Node1 Node2 Owner hca2_on_allo Recurrence hca2_on Recurrence hca2_on_allo Hub1? hca2_on Hub1? hca2_on_allo Hub2? hca2_on Hub2? ConSurf1 ConSurf2
11x26 NT.H9 hca2_on_allo11.69772.35061NoYesNoNo26
26x62 Alloh56 hca2_on_allo20.24770NoNoYesNo30
35x35 Alloh56 hca2_on_allo33.47970NoNoYesNo30
4E1.W91 E2.L176 hca2_on_allo13.34060YesYesYesYes44
55x41 6x55 hca2_on_allo18.38775.54606YesNoYesYes45
65x38 5x41 hca2_on_allo17.09014.18828NoNoYesNo24
75x38 NT.K16 hca2_on_allo14.20890NoNoYesNo24
85x41 Alloh56 hca2_on_allo58.43410YesNoYesNo40
95x41 E2.F180 hca2_on_allo90.74940YesNoYesYes43
101x27 E1.W91 hca2_on_allo15.5410YesNoYesYes34
111x31 7x32 hca2_on_allo10.97740YesNoYesNo51
122x60 2x64 hca2_on_allo39.81450.373569YesNoYesYes66
131x42 7x42 hca2_on_allo31.74318.40386YesNoYesYes77
142x60 7x42 hca2_on_allo64.21630YesNoYesYes67
153x36 7x42 hca2_on_allo43.48510YesNoYesYes87
163x36 E2.F180 hca2_on_allo1000YesNoYesYes83
171x42 7x43 hca2_on_allo12.96075.91244YesNoNoNo75
181x42 7x47 hca2_on_allo15.08710YesNoYesNo78
192x46 2x50 hca2_on_allo78.5880YesNoYesYes99
201x56 1x60 hca2_on_allo11.71255.27306NoNoNoYes75
211x56 8x50 hca2_on_allo14.01150NoNoYesNo79
227x54 8x50 hca2_on_allo29.48840YesYesYesNo79
231x57 2x40 hca2_on_allo15.3880YesNoYesNo77
242x40 8x50 hca2_on_allo14.65290YesNoYesNo79
252x38 2x42 hca2_on_allo15.96530NoNoNoNo67
262x42 3x45 hca2_on_allo20.5240.77731NoNoNoNo77
273x45 4x49 hca2_on_allo22.79340NoNoNoNo77
283x42 4x49 hca2_on_allo27.30776.90383YesNoNoNo87
293x42 4x50 hca2_on_allo31.70851.53594YesNoYesNo89
302x48 4x50 hca2_on_allo40.36710NoNoYesNo69
312x44 2x48 hca2_on_allo42.56753.18108YesYesNoNo66
323x51 5x57 hca2_on_allo62.61781.39226YesYesNoNo78
335x53 5x57 hca2_on_allo66.14040NoNoNoNo78
343x44 5x53 hca2_on_allo69.62360.617825NoNoNoNo77
353x44 5x54 hca2_on_allo73.06720NoNoNoNo78
365x54 6x44 hca2_on_allo76.29392.73855NoNoYesYes89
373x40 6x44 hca2_on_allo26.23220NoNoYesYes89
383x36 5x461 hca2_on_allo44.07724.27305YesNoNoYes85
392x40 8x47 hca2_on_allo21.79190YesNoNoNo78
403x34 4x53 hca2_on_allo26.1736.0044YesYesNoYes57
413x37 4x53 hca2_on_allo29.75488.80041YesYesNoYes77
422x60 3x28 hca2_on_allo21.81660YesNoNoNo65
433x28 E1x50 hca2_on_allo44.88132.24429NoNoYesYes59
44E1x50 E1x52 hca2_on_allo33.0117.59494YesYesYesNo97
453x24 E1x52 hca2_on_allo20.33650NoNoYesNo57
463x23 3x24 hca2_on_allo14.5742.47561NoNoNoNo25
475x40 E2.F180 hca2_on_allo10.61720.987083YesNoYesYes53
483x51 3x55 hca2_on_allo34.59472.76153YesYesYesYes78
493x54 5x64 hca2_on_allo32.13280NoNoNoNo85
503x55 5x64 hca2_on_allo33.83991.39945YesYesNoNo85
515x47 6x44 hca2_on_allo18.46667.69982YesYesYesYes89
525x62 6x34 hca2_on_allo12.60559.68548NoNoNoNo56
535x65 6x30 hca2_on_allo10.27686.65958NoYesNoNo86
546x32 8x48 hca2_on_allo12.8622.50435NoNoNoNo75
558x47 8x48 hca2_on_allo17.35161.39226NoNoNoNo85
567x40 7x43 hca2_on_allo10.82440NoNoNoNo75
57E3.G262 E3.S261 hca2_on_allo12.42784.80323NoNoNoNo43
585x35 E3.G262 hca2_on_allo18.5850NoNoNoNo34
593x28 3x32 hca2_on_allo25.49710NoNoYesNo56
607x41 7x42 hca2_on_allo35.72450NoNoYesYes87
613x32 7x42 hca2_on_allo21.60940YesNoYesYes67
621x26 7x28 Shared11.697726.292NoYesNoNo21
631x26 7x31 Shared26.09435.1126NoYesNoNo24
645x35 E3.T263 Shared12.427826.2403NoNoNoNo33
657x31 7x35 Shared33.943576.1548NoNoNoNo45
667x35 E1.W91 Shared27.865237.3353NoNoYesYes54
676x55 6x58 Shared25.42846.1745YesYesNoNo54
687x34 7x35 Shared38.112443.8383YesYesNoNo45
696x55 7x34 Shared21.999156.4591YesYesYesYes54
707x34 E2.F180 Shared44.654460.9362YesYesYesYes43
712x64 E1.W91 Shared27.899731.1369YesYesYesYes64
727x42 Lig Shared37.239190.4266YesYesYesYes70
73E2.F180 Lig Shared35.818241.7089YesYesYesYes30
741x50 7x50 Shared13.315924.4213NoNoNoYes99
751x50 2x50 Shared15.501526.1627NoNoYesYes99
762x50 7x46 Shared93.749185.5515YesYesNoNo98
772x53 7x46 Shared94.711185.8604NoNoNoNo78
782x53 7x42 Shared95.949585.5515NoNoYesYes77
792x46 7x54 Shared71.804234.3554YesNoYesYes97
807x53 7x54 Shared41.679437.4833YesYesYesYes97
817x49 7x53 Shared56.1744100YesYesYesYes99
827x45 7x49 Shared58.360177.9336NoNoYesYes99
836x48 7x45 Shared62.800379.7095YesYesNoNo89
846x48 7x41 Shared79.165262.5181YesYesNoNo88
853x36 7x41 Shared43.840362.8156YesNoNoNo88
861x57 2x44 Shared61.601569.5671YesNoYesYes76
871x57 7x54 Shared77.877572.0643YesNoYesYes77
882x38 I2x57 Shared13.666215.8824NoNoNoNo67
893x51 3x52 Shared14.065813.21YesYesYesYes75
903x40 5x461 Shared36.543525.0248NoNoNoYes85
916x44 6x48 Shared66.485814.1697YesYesYesYes98
923x37 5x461 Shared38.211112.6812YesYesNoYes75
934x41 I2x57 Shared11.687812.7114NoNoNoNo37
945x65 6x34 Shared16.236611.0519NoYesNoNo86
953x54 5x65 Shared28.141521.6612NoNoNoYes88
966x58 7x30 Shared17.430623.4184NoNoNoNo44
976x62 7x27 Shared12.358835.8123NoNoYesYes32
982x50 7x49 Shared10.33661.4994YesYesYesYes99
993x40 6x48 Shared10.247224.542NoNoYesYes88
100E2.L176 E2x51 hca2_on0.029601915.0117YesYesNoYes44
101E1.W91 E2x51 hca2_on1.6774432.239YesYesNoYes44
1025x33 7x31 hca2_on9.6798140.3655YesNoNoNo34
1035x33 7x27 hca2_on2.15658.2508YesNoYesYes32
1045x35 6x62 hca2_on031.0277NoNoNoNo33
105E3.T263 NT.N17 hca2_on9.3344521.45NoNoNoNo35
106NT.F10 NT.N17 hca2_on6.2311916.6568NoNoNoNo75
1075x33 6x58 hca2_on5.5799521.9328YesNoNoNo34
1087x27 7x30 hca2_on020.6828YesYesNoNo24
1092x63 E1x50 hca2_on7.3856628.5708NoNoYesYes59
1102x63 E1.W91 hca2_on6.9416429.7289NoNoYesYes54
1112x64 Lig hca2_on032.9818YesYesYesYes60
112E2x51 Lig hca2_on043.8282NoYesYesYes40
1137x38 Lig hca2_on2.4717540.9072NoNoYesYes50
1147x34 7x38 hca2_on040.4287YesYesNoNo45
1157x50 7x55 hca2_on6.6998910.3091NoYesNoNo98
1161x54 2x44 hca2_on9.3196512.6726NoNoYesYes76
1172x46 7x49 hca2_on035.5594YesNoYesYes99
1187x50 7x54 hca2_on018.6195NoYesYesYes97
1193x36 Lig hca2_on5.8611767.1389YesNoYesYes80
1205x44 5x461 hca2_on022.7848NoNoNoYes65
1215x44 E2.F180 hca2_on4.5241521.69NoNoYesYes63
122I1.L56 I1.W59 hca2_on020.3293NoNoNoNo56
1232x44 I1.W59 hca2_on9.3887251.1976YesYesNoNo66
1242x40 I1.L56 hca2_on017.164YesNoNoNo75
1252x41 I1.W59 hca2_on7.0551128.5378NoNoNoNo76
1262x38 4x42 hca2_on019.0506NoNoNoNo67
1272x41 4x42 hca2_on2.3582822.2158NoNoNoNo77
1283x51 5x61 hca2_on027.838YesYesNoNo78
1295x61 6x37 hca2_on050.9217NoNoNoNo87
1303x50 6x37 hca2_on054.4936NoNoNoNo97
1313x50 7x53 hca2_on4.6968356.5037NoNoYesYes99
1322x53 3x35 hca2_on012.7243NoNoNoYes79
1333x25 E1x50 hca2_on4.9780512.2545NoNoYesYes99
1343x25 E2.P168 hca2_on011.0548NoNoNoNo94
1353x34 3x35 hca2_on7.6718110.9183YesYesNoYes59
1363x54 5x61 hca2_on2.126423.0104NoNoNoNo88
1377x52 7x53 hca2_on7.8888910.5188NoNoYesYes89
1386x57 6x61 hca2_on6.2558628.7835NoNoNoNo53
1396x61 7x27 hca2_on4.9583133.5709NoNoYesYes32
1406x57 6x60 hca2_on023.9932NoNoNoNo54
1416x60 6x64 hca2_on6.2311919.2NoNoNoNo41
1427x25 7x28 hca2_on8.7868214.6554YesNoNoNo21
143NT.D8 NT.F10 hca2_on011.8579NoNoNoNo67

Here, those paths that begin and end at given residue pair(s) or that pass through a residue are used to generate a novel metapath. Such a path filtering is particularly recommended if some information on allosteric residues is available. The selection syntax for a residue pair ("Pairs") is C:C:c534,A:A:?600 (the lower-case "c" stands for cytosine and "?" indicates any non standard amino acid or nucleotide residue). Selection of more than one apical residue pair has the following syntax: C:C:c534,A:A:?600,C:C:c534,A:A:E41. Only one residue can be selected as a tail ("Tail"). For midway residue(s), each residue must be separated by a comma as well e.g. A:A:?600,A:A:E41.

Midway



Download PSN data

2D representation of the global metapath, ligand(s) interactions and
histograms of path distribution according to several parameters
(click on the image to enlarge it 🔍):

A 2D representation of the global communication in the network.

Number of shortest communication paths as a function of the average residue correlation.

Number of shortest communication paths as a function of the average interaction strength of their links.

Number of shortest communication paths as a function of the % of hub nodes in each path.

Number of shortest communication paths as a function of the number of nodes in each path.

Number of shortest communication paths as a function of the % of correlated nodes in each path.


2D representation of the interactions of this orthosteric/allosteric ligand.


Node1Node2OwnerNet1LinkStrengthNet2LinkStrengthComm1Comm2Node1ShellNode2Shell
1x311x35Shared4.7098.5651122
1x352x64Shared10.0817.581121
1x427x42Shared5.4994.490021
2x537x42Shared3.2815.860021
2x563x32hca2_on3.80800021
2x577x42Shared4.9227.030021
2x602x64Shared6.9165.861111
2x603x32Shared4.1537.611111
2x60Lighca2_on5.6301110
2x64E1.W91Shared6.36613.021112
2x64Lighca2_on4.48601110
E1.W91E2x51Shared3.3364.3250121
3x29E2x52Shared3.3029.011011
3x32LigShared9.18110.11110
3x365x461Shared5.3496.9750112
3x367x41Shared5.0455.820112
3x36LigShared8.8029.480110
E2.L176E2x51Shared3.4537.510121
E2x51Lighca2_on3.48700110
5x40E2x52Shared6.1376.9750121
E2x52LigShared6.8699.1151110
5x40E2.F180Shared5.88211.3150121
5x44E2.F180Shared6.00212.3250121
7x34E2.F180Shared6.32312.860121
E2.F180LigShared7.70111.590110
5x445x461hca2_on3.61500122
7x38LigShared6.3666.0050010
7x42LigShared7.9917.590110
1x312x64Shared3.754.2351121
3x29Lighca2_on5.0501010
7x347x38hca2_on6.33500121
1x397x42hca2_on3.16300021
E2Lighca2_on2.48500010
5x32E2x51hca2_on2.28200021
3x33Lighca2_on2.20200010
1x31E1.W91hca2_on_allo07.051122
2x603x28hca2_on_allo05.651112
2x607x42hca2_on_allo04.1051111
E1.W91E2.L176hca2_on_allo04.560122
3x283x32hca2_on_allo04.240121
3x29E2x50hca2_on_allo04.761012
3x327x42hca2_on_allo06.4451111
3x36E2.F180hca2_on_allo04.2750111
3x367x42hca2_on_allo04.1150111
E2.F180E2x52hca2_on_allo03.960111
5x41E2.F180hca2_on_allo04.668121
5x447x34hca2_on_allo05.360122
7x417x42hca2_on_allo05.620121
1x392x60hca2_on_allo03.460021
1x362x64hca2_on_allo02.780021
3x334x57hca2_on_allo01.680012

Location and physicochemical properties of the interaction partners of this ligand

Interactions of this ligand

Difference Members
Id Description
hca2_on_allo 8J6P-HCA2-Niacin-Compound 9n-Gi1/&β;1/&γ;2
8J6Q-HCA2-Beta-hydroxybutyrate-Compound 9n-Gi1/&β;1/&γ;2
hca2_on 8H2G-HCA2-Niacin-Gi1/&β;1/&γ;2
8IHI-HCA2-Acifran-Gi1/&β;1/&γ;2
8IHH-HCA2-LUF6283-Gi1/&β;1/&γ;2
8IHF-HCA2-MK6892-Gi1/&β;1/&γ;2
8JHY-HCA2-Compound 9n-Gi1/&β;1/&γ;2
8IHB-HCA2-GSK256073-Gi1/&β;1/&γ;2
8JIM-HCA2-MMF-Gi1/&β;1/&γ;2
8IJB-HCA2-Acipimox-Gi1/&β;1/&γ;2
8IJD-HCA2-MK6892-Gi1/&β;1/&γ;2
8J6J-HCA2-GSK256073-Gi1/&β;1/&γ;2
Network Difference
Value hca2_on_allo hca2_on
Imin 3.825 3.177
Number of Linked Nodes 287 308
Number of Specific Nodes 1 (0.35%) 22  (7.14%)
Number of Shared Nodes 286 (99.65%) 286  (92.86%)
Number of Links 334 337
Number of Specific Links 96 (28.74%) 99  (29.38%)
Number of Shared Links 238 (71.26%) 238  (70.62%)
Number of Hubs 50 37
Number of Specific Hubs 25 (50.00%) 12  (32.43%)
Number of Shared Hubs 25 (50.00%) 25  (67.57%)
Average % Shared Neighbours (Jaccard) 57.36
Average % Shared Neighbours (Otsuka) 66.54
Average % Shared Neighbours (Overlap Coefficient) 76.37
Average % Shared Cliques (k3-6) 80.23
Graphlets Similarity 0.582135
Paths Difference
Value hca2_on_allo hca2_on
Number Of Nodes in MetaPath 91 74
Specific Nodes in MetaPath 43 (47.25%) 26  (35.14%)
Shared Nodes in MetaPath 286 (99.65%) 286  (99.65%)
Number Of Links MetaPath 99 82
Specific Links in MetaPath 61 (61.62%) 44  (53.66%)
Shared Links in MetaPath 238 (71.26%) 238  (71.26%)
Number of Shortest Paths 72773 159413
Length Of Smallest Path 3 3
Average Path Length 12.9437 16.9535
Length of Longest Path 35 33
Minimum Path Strength 1.555 0.257
Average Path Strength 6.81628 5.39593
Maximum Path Strength 20.285 13.3435
Minimum Path Correlation 0.7 0.701
Average Path Correlation 0.916931 0.911432
Maximum Path Correlation 0.99 0.99
Minimum % Of Corr. Nodes 3.84615 3.44828
Average % Of Corr. Nodes 46.5235 34.0273
Maximum % Of Corr. Nodes 100 100
Minimum Path Hubs % 0 0
Average Path Hubs % 51.6901 42.0133
Maximum Path Hubs % 100 100

Details about the values in these tables can be found in the corresponding documentation page .

You can download a compressed (zip) file with structure(s), 3D outputs (as PyMol and VMD scripts) and numerical data files (as csv and plain text files).

Download hca2_on_ortoallo.zip<



You can click to copy the link of this page to easily come back here later

or use this QR code to link and share this page.



You can also  read or  download a guide explaining the meaning of all files and numerical data.