Orange: nodes, hubs and links specific of histamine_off network

Green: nodes, hubs and links shared by both networks

Purple: nodes, hubs and links specific of histamine_on network

Index: hub id, click on each number to highlight the corresponding hub in the 3D visualization.

Hub: the hub being considered.

Owner: the name of the network the hub belong to or "Shared" if the corresponding hub is present in both networks.

Avg Int. Strength: the average interaction strength of all the links of the corresponding hub in the corresponding network.

Num Of Links: the number of links of the corresponding hub in the corresponding network.

ConSurf: this column reports the ConSurf conservation grades of each hub.


Index Hub Owner histamine_off Avg Int. Strength histamine_on Avg Int. Strength histamine_off Num Of Links histamine_on Num Of Links ConSurf
1NT histamine_off00415
2I1x50 histamine_off00419
32x56 histamine_off250429
43x37 histamine_off7550439
5I2x52 histamine_off250425
65x54 histamine_off5050439
75x58 histamine_off00439
86x31 histamine_off250417
9E3 histamine_off250424
107x34 histamine_off00427
117x39 histamine_off10050639
127x45 histamine_off750439
132x42 Shared5050748
142x57 Shared7550669
15E1x50 Shared5050489
163x33 Shared5050449
173x51 Shared075449
18I2x56 Shared2550448
194x57 Shared7550548
20E2 Shared10010012165
215x39 Shared250449
225x47 Shared5050449
236x44 Shared7550449
246x48 Shared75100479
256x51 Shared100100759
266x52 Shared2550449
277x38 Shared2550458
287x42 Shared100100679
298x54 Shared250459
30Lig Shared10010013110
311x52 histamine_on00149
322x38 histamine_on050259
332x43 histamine_on050249
342x50 histamine_on25100369
352x60 histamine_on2550148
362x65 histamine_on00246
37E1x52 histamine_on00249
383x28 histamine_on5050249
393x32 histamine_on2550349
403x46 histamine_on00149
414x50 histamine_on075249
42E2x50 histamine_on050349
435x37 histamine_on00158
445x48 histamine_on00348
455x57 histamine_on050347
466x29 histamine_on050148
477x49 histamine_on00249
487x52 histamine_on00149
   
Orange: nodes, hubs and links specific of histamine_off network

Green: nodes, hubs and links shared by both networks

Purple: nodes, hubs and links specific of histamine_on network

Index: link id, click on each number to highlight the corresponding link in the 3D visualization.

Node1 Node2: the two nodes of the corresponding link.

Owner: the name of the network the link belong to or "Shared" if the corresponding link is present in both networks.

Recurrence: the relative Recurrence in the filtered pool of shortest paths.

Hub1?, Hub2?: "Yes" if the corresponding node has more than 3 links, otherwise "No".

ConSurf1, ConSurf2: these columns report the ConSurf conservation grades of the two nodes involved in a link.


Index Node1 Node2 Owner histamine_off Recurrence histamine_on Recurrence histamine_off Hub1? histamine_on Hub1? histamine_off Hub2? histamine_on Hub2? ConSurf1 ConSurf2
17x39 7x42 histamine_off17.40473.58368YesNoYesYes99
22x56 7x42 histamine_off31.31011.44023YesNoYesYes99
32x53 2x56 histamine_off50.62580NoNoYesNo99
42x53 7x46 histamine_off35.73485.04079NoNoNoNo99
52x50 7x46 histamine_off33.22816.70042NoYesNoNo99
61x50 7x50 histamine_off15.48311.68776NoNoNoNo99
71x49 7x50 histamine_off12.91970NoNoNoNo99
83x40 Lig histamine_off71.19660NoNoYesYes90
93x40 6x44 histamine_off70.16130.35443NoNoYesYes99
106x44 7x45 histamine_off1000YesYesYesNo99
112x46 7x49 histamine_off94.76691.54149NoNoNoYes99
122x46 7x53 histamine_off62.23360NoNoNoNo99
132x43 7x53 histamine_off59.56750NoYesNoNo99
142x40 2x43 histamine_off58.06420NoNoNoYes99
152x40 I1x50 histamine_off55.02220NoNoYesNo99
168x50 I1x50 histamine_off38.12441.24895NoNoYesNo99
171x53 8x54 histamine_off12.18580NoNoYesYes99
181x53 2x47 histamine_off10.47331.68776NoNoNoNo99
191x60 I1x50 histamine_off15.27740NoNoYesNo89
201x60 8x53 histamine_off11.85250NoNoNoNo88
212x46 3x42 histamine_off37.48630NoNoNoNo98
222x45 3x42 histamine_off35.87661.68776NoNoNoNo98
232x45 4x46 histamine_off31.00519.98594NoNoNoNo99
242x42 4x46 histamine_off22.74420YesYesNoNo89
253x49 I2x57 histamine_off11.16820NoNoNoNo99
262x53 3x35 histamine_off12.91973.3699NoNoNoNo98
272x52 3x35 histamine_off10.34921.68776NoNoNoNo88
283x33 E2x52 histamine_off30.0625.1308YesYesNoNo99
29E2 E2x52 histamine_off29.0028.10127YesYesNoNo59
302x63 E2 histamine_off21.65220NoNoYesYes75
315x43 Lig histamine_off35.90140NoNoYesYes80
325x39 5x43 histamine_off35.83761.04641YesYesNoNo98
333x22 E2 histamine_off10.22511.25457NoNoYesYes55
343x37 3x41 histamine_off10.78890YesNoNoNo98
353x43 6x44 histamine_off72.69990NoNoYesYes99
363x43 5x54 histamine_off71.26040NoNoYesNo99
373x44 5x54 histamine_off55.59656.52039NoNoYesNo89
383x44 3x48 histamine_off52.54030NoNoNoNo86
395x54 6x41 histamine_off14.96540YesNoNoNo99
405x58 6x41 histamine_off11.52994.84388YesNoNoNo99
415x47 5x48 histamine_off11.31368.29255YesYesNoYes98
423x51 5x61 histamine_off23.05274.89451YesYesNoNo99
433x54 5x61 histamine_off21.37923.26864NoNoNoNo99
443x54 5x64 histamine_off19.69861.63713NoNoNoNo96
455x64 5x67 histamine_off18.0110NoNoNoNo65
465x67 5x68 histamine_off14.61440NoNoNoNo58
478x47 8x50 histamine_off12.18930NoNoNoNo99
486x36 8x47 histamine_off10.46620NoNoNoNo99
49E2 E3 histamine_off12.49780YesYesYesNo54
507x54 8x54 histamine_off10.12940NoNoYesYes99
515x68 6x31 histamine_off12.9020NoNoYesNo87
522x63 E1x50 histamine_off19.38662.09845NoNoYesYes79
53E1x50 E1x52 histamine_off10.23587.94374YesYesNoYes99
542x56 3x32 histamine_off28.60492.00281YesNoNoYes99
553x32 Lig histamine_off29.76422.40788NoYesYesYes90
566x48 6x51 histamine_off12.32760YesYesYesYes99
571x50 2x50 Shared25.665721.5021NoNoNoYes99
587x42 Lig Shared56.206339.2799YesYesYesYes90
597x45 7x49 Shared96.085898.5823YesNoNoYes99
608x50 8x54 Shared25.038117.1533NoNoYesYes99
616x48 Lig Shared69.877798.9648YesYesYesYes90
626x44 6x48 Shared81.577767.8143YesYesYesYes99
632x42 3x49 Shared12.565127.4318YesYesNoNo89
643x33 Lig Shared37.337343.7018YesYesYesYes90
655x39 E2 Shared28.604914.4923YesYesYesYes95
663x48 5x57 Shared32.944517.4008NoNoNoYes67
673x51 5x57 Shared27.966714.346YesYesNoYes97
683x48 3x52 Shared19.691515.8594NoNoNoNo68
693x52 I2x52 Shared16.642414.706NoNoYesNo85
706x52 Lig Shared26.133717.4233YesYesYesYes90
715x47 6x52 Shared31.398717.0689YesYesYesYes99
725x47 6x49 Shared13.17514.6835YesYesNoNo98
732x57 7x42 Shared11.898612.3994YesYesYesYes99
746x48 7x45 histamine_on0100YesYesYesNo99
752x50 7x49 histamine_on038.6217NoYesNoYes99
761x50 2x51 histamine_on7.7716718.3966NoNoNoNo98
773x43 7x49 histamine_on075.1111NoNoNoYes99
783x43 7x53 histamine_on074.0535NoNoNoNo99
793x46 7x53 histamine_on059.9156NoYesNoNo99
802x43 3x46 histamine_on029.609NoYesNoYes99
812x43 8x50 histamine_on019.4374NoYesNoNo99
822x42 3x46 histamine_on1.7443732.9226YesYesNoYes89
832x38 3x49 histamine_on023.6681NoYesNoNo99
842x38 4x42 histamine_on014.391NoYesNoNo99
852x41 4x42 histamine_on013.2152NoNoNoNo89
862x41 4x46 histamine_on011.6062NoNoNoNo89
872x60 7x42 histamine_on025.5696NoYesYesYes89
882x60 3x28 histamine_on029.519NoYesNoYes89
893x28 E1x50 histamine_on026.1716NoYesYesYes99
905x54 6x44 histamine_on064.827YesNoYesYes99
913x47 5x54 histamine_on1.762159.2293NoNoYesNo89
923x47 5x58 histamine_on028.2925NoNoYesNo89
933x47 5x57 histamine_on034.8129NoNoNoYes87
94I2x52 I2x56 histamine_on8.4098613.5921YesNoYesYes58
953x33 E2 histamine_on036.0619YesYesYesYes95
964x60 5x39 histamine_on2.6555613.5696NoNoYesYes99
974x59 4x60 histamine_on1.4430112.4669NoNoNoNo89
985x36 E2 histamine_on2.8647414.7904NoNoYesYes85
995x36 5x38 histamine_on1.4997314.0534NoNoNoNo85
1005x37 5x38 histamine_on012.4838NoYesNoNo85
1015x51 6x44 histamine_on011.8987NoNoYesYes99
1025x47 5x51 histamine_on5.6869311.3699YesYesNoNo99
1035x58 6x37 histamine_on4.5913822.4866YesNoNoNo99
1046x33 6x37 histamine_on021.007NoNoNoNo99
1055x65 6x33 histamine_on019.4824NoNoNoNo99
1065x65 6x29 histamine_on018.3629NoNoNoYes98
1076x29 6x30 histamine_on011.218NoYesNoNo88
1086x40 7x53 histamine_on1.7443718.7511NoNoNoNo99
1096x40 7x52 histamine_on011.5837NoNoNoYes99
1102x60 2x64 histamine_on023.2968NoYesNoNo88
1113x21 E1x50 histamine_on010.0141NoNoYesYes89
1122x64 2x65 histamine_on018.121NoNoNoYes86
1134x54 4x59 histamine_on010.8917NoNoNoNo58
1141x32 2x65 histamine_on010.9592NoNoNoYes06
1157x38 Lig histamine_on2.6945625.5921YesYesYesYes80
1162x60 7x38 histamine_on024.1013NoYesYesYes88
1173x29 E2x52 histamine_on012.27NoNoNoNo99

Here, those paths that begin and end at given residue pair(s) or that pass through a residue are used to generate a novel metapath. Such a path filtering is particularly recommended if some information on allosteric residues is available. The selection syntax for a residue pair ("Pairs") is C:C:c534,A:A:?600 (the lower-case "c" stands for cytosine and "?" indicates any non standard amino acid or nucleotide residue). Selection of more than one apical residue pair has the following syntax: C:C:c534,A:A:?600,C:C:c534,A:A:E41. Only one residue can be selected as a tail ("Tail"). For midway residue(s), each residue must be separated by a comma as well e.g. A:A:?600,A:A:E41.

Midway



Download PSN data

2D representation of the global metapath, ligand(s) interactions and
histograms of path distribution according to several parameters
(click on the image to enlarge it 🔍):

A 2D representation of the global communication in the network.

Number of shortest communication paths as a function of the average residue correlation.

Number of shortest communication paths as a function of the average interaction strength of their links.

Number of shortest communication paths as a function of the % of hub nodes in each path.

Number of shortest communication paths as a function of the number of nodes in each path.

Number of shortest communication paths as a function of the % of correlated nodes in each path.


2D representation of the interactions of this orthosteric/allosteric ligand.


Node1Node2OwnerNet1LinkStrengthNet2LinkStrengthComm1Comm2Node1ShellNode2Shell
2x563x32Shared7.6659.88751121
2x567x42Shared7.88755.61251121
2x577x39Shared5.2353.79251122
2x577x42Shared5.08755.0251121
2x607x39histamine_off8.47500122
3x327x42Shared6.037510.5251111
3x32LigShared11.639.52751110
3x334x57Shared8.214.11251111
3x33E2x52Shared4.05754.031112
3x33LigShared20.92522.26251110
3x36LigShared9.53257.30110
3x373x41histamine_off4.86501022
3x374x57Shared6.9755.581021
3x375x461Shared6.585.121021
3x405x50histamine_off6.347500112
3x406x44Shared6.59254.5050112
3x40Lighistamine_off4.442500110
4x575x43Shared7.8855.83251011
4x575x461histamine_off6.7801011
4x57Lighistamine_off4.017501010
E2E2Shared46.85565.32251122
E2E2x52Shared15.967513.0551122
5x39E2Shared18.82255.15251122
5x395x43Shared3.56754.271121
5x406x55Shared8.377511.2650121
5x43Lighistamine_off3.822501010
5x461LigShared9.29753.731010
5x476x52Shared30.54512.450021
6x446x48Shared6.2655.510121
6x447x45histamine_off7.852500122
6x486x51histamine_off5.787501111
6x487x41Shared9.852512.981111
6x48LigShared12.453.57251110
6x516x52histamine_off3.3501111
6x516x55histamine_off9.027501111
6x517x37Shared6.86754.16251112
6x517x38Shared5.146.031111
6x51LigShared12.4513.4251110
6x52LigShared15.5154.4151010
6x55Lighistamine_off6.79501110
7x387x42Shared4.83758.34251111
7x38LigShared4.0857.20251110
7x397x42Shared8.44255.211121
7x42LigShared3.64254.40751110
3x334x61histamine_off4.2301112
6x517x34Shared6.266.0551112
7x347x38Shared4.973.3151121
5x446x52Shared2.4253.140021
5x465x49histamine_off2.1400112
5x495x50Shared2.053.3350022
2x607x38histamine_on04.31250121
2x607x42histamine_on011.120121
3x323x36histamine_on03.37751111
3x33E2histamine_on04.38251112
3x366x48histamine_on03.7750111
3x406x48histamine_on011.620111
3x415x461histamine_on03.6250021
4x61E2histamine_on04.6550022
5x40E2histamine_on09.1450122
6x487x45histamine_on07.911112
6x526x55histamine_on04.2851011
4x564x57histamine_on04.4350021
6x55E2histamine_on03.56751112
5x466x48histamine_on03.270111
5x46Lighistamine_on04.670110
6x517x41histamine_on03.9451111
7x41Lighistamine_on08.09250110
5x425x46histamine_on01.81750021

Location and physicochemical properties of the interaction partners of this ligand

Interactions of this ligand

Difference Members
Id Description
histamine_off h1_off
histamine_on h1_on
h4_on
Network Difference
Value histamine_off histamine_on
Imin 3.3275 3.2475
Number of Linked Nodes 249 256
Number of Specific Nodes 6 (2.41%) 13  (5.08%)
Number of Shared Nodes 243 (97.59%) 243  (94.92%)
Number of Links 268 285
Number of Specific Links 127 (47.39%) 144  (50.53%)
Number of Shared Links 141 (52.61%) 141  (49.47%)
Number of Hubs 30 36
Number of Specific Hubs 12 (40.00%) 18  (50.00%)
Number of Shared Hubs 18 (60.00%) 18  (50.00%)
Average % Shared Neighbours (Jaccard) 34.54
Average % Shared Neighbours (Otsuka) 44.58
Average % Shared Neighbours (Overlap Coefficient) 55.83
Average % Shared Cliques (k3-6) 80.65
Graphlets Similarity 0.593016
Paths Difference
Value histamine_off histamine_on
Number Of Nodes in MetaPath 72 61
Specific Nodes in MetaPath 40 (55.56%) 29  (47.54%)
Shared Nodes in MetaPath 243 (97.59%) 243  (97.59%)
Number Of Links MetaPath 73 61
Specific Links in MetaPath 56 (76.71%) 44  (72.13%)
Shared Links in MetaPath 141 (52.61%) 141  (52.61%)
Number of Shortest Paths 63536 38323
Length Of Smallest Path 3 3
Average Path Length 14.1315 12.1254
Length of Longest Path 30 28
Minimum Path Strength 0.58125 0.29875
Average Path Strength 6.34219 5.9466
Maximum Path Strength 23.03 18.1875
Minimum Path Correlation 0.7 0.7
Average Path Correlation 0.911906 0.900239
Maximum Path Correlation 0.99 0.99
Minimum % Of Corr. Nodes 3.7037 4.54545
Average % Of Corr. Nodes 44.7311 44.7381
Maximum % Of Corr. Nodes 100 100
Minimum Path Hubs % 0 0
Average Path Hubs % 40.1685 46.1784
Maximum Path Hubs % 100 100

Details about the values in these tables can be found in the corresponding documentation page .

You can download a compressed (zip) file with structure(s), 3D outputs (as PyMol and VMD scripts) and numerical data files (as csv and plain text files).

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