Orange: nodes, hubs and links specific of lipid_off network

Green: nodes, hubs and links shared by both networks

Purple: nodes, hubs and links specific of lipid_on network

Index: hub id, click on each number to highlight the corresponding hub in the 3D visualization.

Hub: the hub being considered.

Owner: the name of the network the hub belong to or "Shared" if the corresponding hub is present in both networks.

Avg Int. Strength: the average interaction strength of all the links of the corresponding hub in the corresponding network.

Num Of Links: the number of links of the corresponding hub in the corresponding network.

ConSurf: this column reports the ConSurf conservation grades of each hub.


Index Hub Owner lipid_off Avg Int. Strength lipid_on Avg Int. Strength lipid_off Num Of Links lipid_on Num Of Links ConSurf
11x59 lipid_off00435
22x39 lipid_off13.33330418
32x42 lipid_off6.666670538
43x25 lipid_off2016.6667439
53x31 lipid_off00424
63x33 lipid_off29.16670426
73x50 lipid_off57.50639
85x51 lipid_off025536
95x65 lipid_off00418
106x58 lipid_off2016.6667424
117x49 lipid_off1519.4444539
128x49 lipid_off00426
138x59 lipid_off00420
14E1x50 lipid_off36.666724.4048420
15I4 lipid_off100520
16NT Shared63.333334.72221774
171x50 Shared6.666678.73016449
181x57 Shared016.6667547
192x40 Shared2016.6667479
202x41 Shared00443
212x50 Shared23.333348.1192459
223x49 Shared108.33333449
233x51 Shared208.33333458
24E2 Shared10010024234
255x58 Shared1568.0556579
265x60 Shared08.33333444
276x48 Shared73.333364.5833568
28E3 Shared5064.9802981
297x53 Shared2059.7222459
30Lig Shared10010011160
312x46 lipid_on1031.1632249
322x51 lipid_on00347
332x57 lipid_on1020.1389247
342x61 lipid_on00345
353x29 lipid_on12.529.7743344
363x56 lipid_on00345
37I2x53 lipid_on08.33333147
386x30 lipid_on00157
396x32 lipid_on00247
406x44 lipid_on2020.8333249
418x55 lipid_on00145
42I3 lipid_on016.6667243.4
   
Orange: nodes, hubs and links specific of lipid_off network

Green: nodes, hubs and links shared by both networks

Purple: nodes, hubs and links specific of lipid_on network

Index: link id, click on each number to highlight the corresponding link in the 3D visualization.

Node1 Node2: the two nodes of the corresponding link.

Owner: the name of the network the link belong to or "Shared" if the corresponding link is present in both networks.

Recurrence: the relative Recurrence in the filtered pool of shortest paths.

Hub1?, Hub2?: "Yes" if the corresponding node has more than 3 links, otherwise "No".

ConSurf1, ConSurf2: these columns report the ConSurf conservation grades of the two nodes involved in a link.


Index Node1 Node2 Owner lipid_off Recurrence lipid_on Recurrence lipid_off Hub1? lipid_on Hub1? lipid_off Hub2? lipid_on Hub2? ConSurf1 ConSurf2
11x35 1x39 lipid_off12.4760NoNoNoNo57
21x35 2x64 lipid_off13.10310NoNoNoNo54
36x48 7x41 lipid_off99.72061.45995YesYesNoNo87
46x51 7x41 lipid_off99.86350NoNoNoNo77
56x51 6x55 lipid_off1002.91554NoNoNoNo76
66x55 Lig lipid_off69.52470NoNoYesYes60
7Lig NT lipid_off20.22810YesYesYesYes04
87x49 7x53 lipid_off33.37340YesNoYesYes99
92x42 4x42 lipid_off12.04720YesNoNoNo87
103x46 6x37 lipid_off32.32720NoNoNoNo98
115x58 6x37 lipid_off34.09140.801883YesYesNoNo98
123x47 5x58 lipid_off40.31322.91554NoNoYesYes89
133x47 5x54 lipid_off41.26841.45995NoNoNoNo88
145x54 6x41 lipid_off63.12750NoNoNoNo88
153x43 6x41 lipid_off63.88770NoNoNoNo88
163x43 6x44 lipid_off64.64150NoNoNoYes89
173x33 Lig lipid_off12.79449.45699YesNoYesYes60
183x44 5x54 lipid_off28.24980NoNoNoNo78
193x51 5x57 lipid_off17.12861.45995YesYesNoNo87
205x53 5x57 lipid_off18.23970NoNoNoNo67
213x44 5x53 lipid_off19.36391.45995NoNoNoNo76
225x40 E2 lipid_off30.37460NoNoYesYes54
235x51 6x49 lipid_off15.88420YesNoNoNo65
246x49 6x50 lipid_off17.43722.81095NoNoNoNo59
256x50 7x37 lipid_off18.98375.59139NoNoNoNo95
266x54 7x37 lipid_off20.52376.96853NoNoNoNo45
276x54 7x34 lipid_off25.10480NoNoNoNo44
287x34 E2 lipid_off25.76760.117668NoNoYesYes44
292x40 I1x50 lipid_off11.02387.30846YesYesNoNo99
301x45 1x49 lipid_off12.31030NoNoNoNo48
317x26 E3 lipid_off10.83530NoNoYesYes01
322x64 Lig lipid_off10.37720.801883NoNoYesYes40
335x40 6x55 lipid_off32.00881.45995NoNoNoNo56
341x49 7x50 Shared14.695114.7869NoNoNoNo89
351x50 7x50 Shared15.877716.1117YesYesNoNo99
361x50 2x50 Shared25.104831.3301YesYesYesYes99
372x50 7x49 Shared28.457720.8751YesYesYesNo99
387x45 7x49 Shared68.8067100NoNoYesNo99
396x48 7x45 Shared71.347499.8867YesYesNoNo89
401x57 2x43 Shared29.773546.823YesYesNoNo78
412x43 7x53 Shared30.433147.8253NoNoYesYes89
421x57 2x40 Shared25.757842.3255YesYesYesYes79
432x42 3x46 Shared31.294127.8436YesNoNoNo89
446x44 6x48 Shared65.388720.9318NoYesYesYes98
452x46 3x42 Shared12.986123.7035NoYesNoNo98
462x46 7x49 Shared14.175379.1641NoYesYesNo99
472x42 3x49 Shared17.921324.6317YesNoYesYes89
482x40 8x49 Shared11.556624.6753YesYesYesNo96
49E2 Lig Shared35.371552.2488YesYesYesYes40
50E2 E3 Shared14.100519.1755YesYesYesYes41
512x57 2x61 lipid_on012.8606NoYesNoYes75
522x57 Lig lipid_on021.4155NoYesYesYes70
536x48 Lig lipid_on095.4328YesYesYesYes80
543x43 7x53 lipid_on090.068NoNoYesYes89
552x46 3x43 lipid_on090.5604NoYesNoNo98
562x38 I2x57 lipid_on017.2318NoNoNoNo56
57I2x53 I2x57 lipid_on0.70827517.9552NoYesNoNo76
583x49 I2x53 lipid_on021.3022YesYesNoYes97
593x46 7x53 lipid_on025.8607NoNoYesYes99
602x45 3x42 lipid_on6.9430512.8606NoNoNoNo98
612x45 4x50 lipid_on4.9936610.0628NoNoNoNo99
623x42 4x49 lipid_on5.0001610.0628NoNoNoNo86
633x50 5x58 lipid_on035.9888YesNoYesYes99
643x50 7x53 lipid_on033.4612YesNoYesYes99
653x51 5x58 lipid_on029.6261YesYesYesYes89
663x51 3x55 lipid_on1.572511.4661YesYesNoNo86
673x51 5x60 lipid_on7.4628812.6297YesYesYesYes84
683x55 3x56 lipid_on1.5367610.0628NoNoNoYes65
692x41 4x42 lipid_on6.3777314.5341YesYesNoNo37
702x38 4x42 lipid_on5.1528615.9113NoNoNoNo57
715x51 6x44 lipid_on012.8606YesNoNoYes69
727x33 E3 lipid_on011.7711NoNoYesYes41
731x49 7x51 lipid_on1.2573513.4533NoNoNoNo86
747x51 7x55 lipid_on012.111NoNoNoNo65
756x31 6x32 lipid_on017.7591NoNoNoYes57
766x32 8x48 lipid_on6.8098423.1413NoYesNoNo75
778x48 8x49 lipid_on023.9083NoNoYesNo56
78E1x50 E1x52 lipid_on6.8293312.8999YesNoNoNo00
79E1x50 E2x50 lipid_on0.0097469114.3293YesNoNoNo00
803x25 E2x50 lipid_on1.3645720.0471YesNoNoNo90
813x25 E2 lipid_on7.07311.514YesNoYesYes94
826x30 6x31 lipid_on015.153NoYesNoNo75
833x29 Lig lipid_on0.95194811.697NoYesYesYes40
843x25 3x29 lipid_on010.407YesNoNoYes94
852x46 2x50 lipid_on017.5891NoYesYesYes99

Here, those paths that begin and end at given residue pair(s) or that pass through a residue are used to generate a novel metapath. Such a path filtering is particularly recommended if some information on allosteric residues is available. The selection syntax for a residue pair ("Pairs") is C:C:c534,A:A:?600 (the lower-case "c" stands for cytosine and "?" indicates any non standard amino acid or nucleotide residue). Selection of more than one apical residue pair has the following syntax: C:C:c534,A:A:?600,C:C:c534,A:A:E41. Only one residue can be selected as a tail ("Tail"). For midway residue(s), each residue must be separated by a comma as well e.g. A:A:?600,A:A:E41.

Midway



Download PSN data

2D representation of the global metapath, ligand(s) interactions and
histograms of path distribution according to several parameters
(click on the image to enlarge it 🔍):

A 2D representation of the global communication in the network.

Number of shortest communication paths as a function of the average residue correlation.

Number of shortest communication paths as a function of the average interaction strength of their links.

Number of shortest communication paths as a function of the % of hub nodes in each path.

Number of shortest communication paths as a function of the number of nodes in each path.

Number of shortest communication paths as a function of the % of correlated nodes in each path.


2D representation of the interactions of this orthosteric/allosteric ligand.


Node1Node2OwnerNet1LinkStrengthNet2LinkStrengthComm1Comm2Node1ShellNode2Shell
NTNTShared29.401813.63221111
E1NTlipid_off4.7406701021
E2NTShared30.44714.92991111
2x64NTlipid_off3.734501011
3x25NTlipid_off4.9570801121
LigNTlipid_off5.211501101
7x31NTShared3.786331.682361021
1x351x39lipid_off4.0123300022
1x432x57Shared4.013583.337460021
2x577x42Shared5.399173.876890012
2x603x28Shared3.742585.101630012
2x60LigShared10.34015.845590010
3x223x26Shared4.431833.359671122
3x22E2Shared6.869927.184141121
3x25E2Shared11.78696.337921121
3x26E2Shared6.598174.142951121
3x29E2Shared4.820674.361481111
3x29LigShared6.677923.361431110
3x32LigShared9.750173.321210010
3x335x43lipid_off4.21400011
3x33LigShared6.892086.953950010
3x366x48Shared8.567173.368480111
3x375x43Shared4.24152.667810021
4x60E2Shared4.589754.866881121
4x605x39Shared9.079675.766541122
E2E2Shared64.98744.89521111
5x36E2Shared13.02219.044951121
5x39E2Shared8.063835.940331121
6x58E2Shared10.00835.616221121
E2E3Shared4.192833.983071112
7x34E2Shared5.393755.531671111
E2LigShared8.49958.036311110
5x40E2lipid_off3.7524201021
6x487x41Shared6.35755.006150112
6x487x45Shared5.779926.82720112
6x516x55Shared5.6444.831290011
6x547x34lipid_off3.8597500021
7x38LigShared10.66189.185130010
7x39Liglipid_off3.9686700010
6x446x48Shared7.293253.272810021
2x64LigShared4.4384.852151010
3x406x48Shared4.3444.983590021
5x406x55Shared4.273753.244781021
6x55Liglipid_off4.21800010
1x352x64lipid_off7.69500021
E1x49E2Shared4.5711.215511121
3x294x65Shared3.856672.993511112
E2E2x51Shared4.360674.171841112
E2E2x52Shared4.024675.596311111
6x587x31lipid_off4.9022501122
6x587x34lipid_off8.98101121
E3E3Shared6.611336.677441122
E3NTlipid_off4.0746701121
7x27NTlipid_off3.8776701121
E1x501NTShared3.671751.427120021
1x397x42lipid_off3.5822500022
7x28NTlipid_off3.4153301021
6x517x41lipid_off3.4093300012
5x38E2Shared3.299673.34640021
1x392x61Shared3.175082.852950022
1x32NTShared2.856421.128551021
7x35LigShared2.756673.014750010
1x462x54Shared2.741832.63560021
3x334x57Shared2.5772.34110012
1x387x39Shared2.573753.574350021
4x64E2Shared2.493674.390890021
2x533x32lipid_off2.3696700021
5x35E2Shared2.0931.813881021
3x334x61lipid_off2.0600012
E1x48NTShared1.7231.0351121
2x563x32Shared1.582672.953070021
5x34E2Shared1.2842.136850021
1x33NTlipid_off0.46400021
6x64E2lipid_off0.34900021
5x31E2lipid_off0.21933300021
5x28NTlipid_off0.19200021
7x24NTlipid_off0.15300021
3x36Liglipid_on03.691640110
5x43Liglipid_on04.967550010
6x51Liglipid_on03.061150010
7x34Liglipid_on04.923741110
3x253x29lipid_on04.522931121
6x48Liglipid_on03.782420110
1x357x35lipid_on03.857760021
4x65E2x52lipid_on03.185360021
E2x52Liglipid_on03.622140110
2x57Liglipid_on02.963080010
3x264x61lipid_on02.796371122
5x37E2lipid_on02.724240121
4x63E2lipid_on02.720640021
2x572x61lipid_on02.627210012
1x397x39lipid_on02.411490021
2x54Liglipid_on02.381620010
7x27E3lipid_on00.6347221122
6x64E3lipid_on00.2733330022
7x277x28lipid_on00.2556941122

Location and physicochemical properties of the interaction partners of this ligand

Interactions of this ligand

Difference Members
Id Description
lipid_off cannabinoid_off
leuko_off
lpl_off
paf_off
prostanoid_off
lipid_on cannabinoid_on
ffa_on
gpr119_on
leuko_on
lpl_on
prostanoid_on
Network Difference
Value lipid_off lipid_on
Imin 3.69225 2.9645
Number of Linked Nodes 309 324
Number of Specific Nodes 11 (3.56%) 26  (8.02%)
Number of Shared Nodes 298 (96.44%) 298  (91.98%)
Number of Links 326 336
Number of Specific Links 145 (44.48%) 155  (46.13%)
Number of Shared Links 181 (55.52%) 181  (53.87%)
Number of Hubs 30 27
Number of Specific Hubs 15 (50.00%) 12  (44.44%)
Number of Shared Hubs 15 (50.00%) 15  (55.56%)
Average % Shared Neighbours (Jaccard) 39.87
Average % Shared Neighbours (Otsuka) 48.23
Average % Shared Neighbours (Overlap Coefficient) 57.38
Average % Shared Cliques (k3-6) 79.69
Graphlets Similarity 0.477702
Paths Difference
Value lipid_off lipid_on
Number Of Nodes in MetaPath 50 51
Specific Nodes in MetaPath 24 (48.00%) 25  (49.02%)
Shared Nodes in MetaPath 298 (96.44%) 298  (96.44%)
Number Of Links MetaPath 50 52
Specific Links in MetaPath 33 (66.00%) 35  (67.31%)
Shared Links in MetaPath 181 (55.52%) 181  (55.52%)
Number of Shortest Paths 51918 44209
Length Of Smallest Path 3 3
Average Path Length 14.5548 12.7097
Length of Longest Path 31 29
Minimum Path Strength 0.431583 0.603239
Average Path Strength 4.48074 3.84722
Maximum Path Strength 21.7345 11.9874
Minimum Path Correlation 0.702333 0.700511
Average Path Correlation 0.892255 0.897041
Maximum Path Correlation 0.98625 0.987743
Minimum % Of Corr. Nodes 3.7037 3.84615
Average % Of Corr. Nodes 37.2636 38.6965
Maximum % Of Corr. Nodes 100 100
Minimum Path Hubs % 0 0
Average Path Hubs % 31.6898 39.2208
Maximum Path Hubs % 100 100

Details about the values in these tables can be found in the corresponding documentation page .

You can download a compressed (zip) file with structure(s), 3D outputs (as PyMol and VMD scripts) and numerical data files (as csv and plain text files).

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