Orange: nodes, hubs and links specific of lpl_off network

Green: nodes, hubs and links shared by both networks

Purple: nodes, hubs and links specific of lpl_on network

Index: hub id, click on each number to highlight the corresponding hub in the 3D visualization.

Hub: the hub being considered.

Owner: the name of the network the hub belong to or "Shared" if the corresponding hub is present in both networks.

Avg Int. Strength: the average interaction strength of all the links of the corresponding hub in the corresponding network.

Num Of Links: the number of links of the corresponding hub in the corresponding network.

ConSurf: this column reports the ConSurf conservation grades of each hub.


Index Hub Owner lpl_off Avg Int. Strength lpl_on Avg Int. Strength lpl_off Num Of Links lpl_on Num Of Links ConSurf
13x49 lpl_off500439
23x50 lpl_off87.50539
34x40 lpl_off00424
44x59 lpl_off00425
55x39 lpl_off62.548.4375537
65x43 lpl_off5050436
76x41 lpl_off00427
87x37 lpl_off00424
98x50 lpl_off00438
10NT Shared10010017146
111x40 Shared00443
121x50 Shared37.525449
132x46 Shared086.9792449
142x57 Shared5070.8333556
153x25 Shared100100459
163x28 Shared87.598.4375676
173x29 Shared62.578.6458445
183x33 Shared62.567.1875455
194x50 Shared00449
20E2 Shared10010020184
215x47 Shared10050547
225x58 Shared058.3333449
236x44 Shared10050449
246x48 Shared10087.5668
256x52 Shared00446
26E3 Shared5045.8333542
277x45 Shared5020.3125449
288x54 Shared00447
29Lig Shared10010016160
301x46 lpl_on050347
31I1x50 lpl_on87.525348
322x40 lpl_on013.5417359
332x42 lpl_on025358
342x50 lpl_on073.4375359
353x37 lpl_on00346
363x44 lpl_on00347
373x46 lpl_on00148
383x51 lpl_on050348
394x42 lpl_on00247
405x51 lpl_on00245
415x62 lpl_on00156
426x28 lpl_on00145
436x45 lpl_on00246
446x59 lpl_on00344
457x39 lpl_on00145
467x53 lpl_on5083.3333369
   
Orange: nodes, hubs and links specific of lpl_off network

Green: nodes, hubs and links shared by both networks

Purple: nodes, hubs and links specific of lpl_on network

Index: link id, click on each number to highlight the corresponding link in the 3D visualization.

Node1 Node2: the two nodes of the corresponding link.

Owner: the name of the network the link belong to or "Shared" if the corresponding link is present in both networks.

Recurrence: the relative Recurrence in the filtered pool of shortest paths.

Hub1?, Hub2?: "Yes" if the corresponding node has more than 3 links, otherwise "No".

ConSurf1, ConSurf2: these columns report the ConSurf conservation grades of the two nodes involved in a link.


Index Node1 Node2 Owner lpl_off Recurrence lpl_on Recurrence lpl_off Hub1? lpl_on Hub1? lpl_off Hub2? lpl_on Hub2? ConSurf1 ConSurf2
12x57 2x60 lpl_off19.94460YesYesNoNo65
22x60 Lig lpl_off19.93991.95223NoNoYesYes50
32x57 3x32 lpl_off19.22680YesYesNoNo66
43x32 Lig lpl_off21.44130NoNoYesYes60
51x43 2x57 lpl_off18.76239.94987NoNoYesYes56
61x43 2x58 lpl_off16.44938.83515NoNoNoNo56
72x46 7x49 lpl_off84.8410YesYesNoNo99
83x43 6x44 lpl_off1000NoNoYesYes99
96x44 6x48 lpl_off97.41025.11059YesYesYesYes98
106x48 Lig lpl_off86.90530YesYesYesYes80
118x50 8x54 lpl_off18.23687.30758YesNoYesYes87
128x47 8x50 lpl_off58.98470NoNoYesNo88
136x36 8x47 lpl_off66.09270NoNoNoNo98
146x36 7x56 lpl_off67.02171.05868NoNoNoNo97
156x39 7x56 lpl_off68.62160NoNoNoNo67
166x39 7x52 lpl_off70.94874.88646NoNoNoNo68
176x40 7x52 lpl_off71.7040NoNoNoNo88
186x40 7x49 lpl_off72.450NoNoNoNo89
192x39 3x49 lpl_off23.30861.734NoNoYesNo89
202x39 2x43 lpl_off39.21370NoNoNoNo88
212x43 7x53 lpl_off40.32560.905338NoNoNoYes89
227x53 8x50 lpl_off42.40410NoYesYesNo98
235x43 Lig lpl_off11.32593.24683YesNoYesYes60
243x40 5x47 lpl_off13.00082.43881NoNoYesYes77
253x43 6x41 lpl_off29.39850NoNoYesNo97
265x58 6x41 lpl_off19.25033.99587YesYesYesNo97
273x47 5x58 lpl_off13.11810.931879NoNoYesYes89
282x39 3x50 lpl_off14.98550NoNoYesNo89
293x47 5x57 lpl_off11.84670NoNoNoNo87
302x38 I2x53 lpl_off10.98810NoNoNoNo77
312x38 3x49 lpl_off14.67110NoNoYesNo79
324x59 5x39 lpl_off15.5250YesNoYesNo57
336x48 6x52 lpl_off11.43380YesYesYesYes86
346x54 E2 lpl_off10.48142.79269NoNoYesYes44
351x40 2x58 lpl_off14.12695.74757YesYesNoNo36
363x50 6x30 lpl_off11.2180YesNoNoNo97
374x55 4x59 lpl_off12.95862.36213NoNoYesNo45
38Lig NT Shared19.517712.2589YesYesYesYes06
391x50 2x50 Shared14.910415.3318YesYesNoYes99
402x50 7x49 Shared23.810644.7036NoYesNoNo99
412x46 3x43 Shared93.39431.6072YesYesNoNo99
422x45 3x42 Shared12.006214.3999NoNoNoNo98
432x46 3x42 Shared19.775721.9552YesYesNoNo98
442x57 7x42 Shared11.795113.7157YesYesNoNo67
453x40 5x50 Shared10.856741.501NoNoNoNo78
463x51 5x57 Shared10.725334.6063NoYesNoNo87
47E2 Lig Shared34.892618.499YesYesYesYes40
487x45 7x49 lpl_on0100YesYesNoNo99
496x48 7x45 lpl_on3.7252593.2822YesYesYesYes89
503x36 6x48 lpl_on7.9009178.0832NoNoYesYes68
513x36 Lig lpl_on063.2203NoNoYesYes60
522x40 I1x51 lpl_on036.0041NoYesNoNo97
532x41 I1x51 lpl_on2.7915939.2008NoNoNoNo47
542x41 4x42 lpl_on5.5409642.3946NoNoNoYes47
552x42 4x42 lpl_on6.652959.1153NoYesNoYes87
562x42 3x46 lpl_on073.1495NoYesNoYes88
572x46 3x46 lpl_on051.5335YesYesNoYes98
582x46 2x50 lpl_on037.685YesYesNoYes99
593x43 7x49 lpl_on057.1336NoNoNoNo99
603x46 7x53 lpl_on023.9251NoYesNoYes89
613x43 7x53 lpl_on027.8443NoNoNoYes99
622x40 I1x50 lpl_on0.80698122.1557NoYesNoYes98
632x38 4x42 lpl_on015.4733NoNoNoYes77
642x42 3x49 lpl_on9.2239811.6072NoYesYesNo89
652x45 4x50 lpl_on9.6087111.8343NoNoYesYes99
663x36 7x42 lpl_on014.7744NoNoNoNo67
673x40 6x48 lpl_on040.0206NoNoYesYes78
683x44 5x50 lpl_on039.5606NoYesNoNo78
693x44 3x48 lpl_on4.1756636.6057NoYesNoNo76
703x48 5x57 lpl_on035.609NoNoNoNo67
713x51 5x61 lpl_on4.1756623.8927NoYesNoNo89
723x54 5x61 lpl_on2.786922.8222NoNoNoNo89
733x56 I2x56 lpl_on010.8257NoNoNoNo67
742x38 I2x56 lpl_on012.0849NoNoNoNo77
755x62 6x33 lpl_on014.3704NoYesNoNo68
765x65 6x33 lpl_on015.2315NoNoNoNo88
773x54 5x65 lpl_on1.3934521.7193NoNoNoNo88

Here, those paths that begin and end at given residue pair(s) or that pass through a residue are used to generate a novel metapath. Such a path filtering is particularly recommended if some information on allosteric residues is available. The selection syntax for a residue pair ("Pairs") is C:C:c534,A:A:?600 (the lower-case "c" stands for cytosine and "?" indicates any non standard amino acid or nucleotide residue). Selection of more than one apical residue pair has the following syntax: C:C:c534,A:A:?600,C:C:c534,A:A:E41. Only one residue can be selected as a tail ("Tail"). For midway residue(s), each residue must be separated by a comma as well e.g. A:A:?600,A:A:E41.

Midway



Download PSN data

2D representation of the global metapath, ligand(s) interactions and
histograms of path distribution according to several parameters
(click on the image to enlarge it 🔍):

A 2D representation of the global communication in the network.

Number of shortest communication paths as a function of the average residue correlation.

Number of shortest communication paths as a function of the average interaction strength of their links.

Number of shortest communication paths as a function of the % of hub nodes in each path.

Number of shortest communication paths as a function of the number of nodes in each path.

Number of shortest communication paths as a function of the % of correlated nodes in each path.


2D representation of the interactions of this orthosteric/allosteric ligand.


Node1Node2OwnerNet1LinkStrengthNet2LinkStrengthComm1Comm2Node1ShellNode2Shell
NTNTShared82.483766.2821111
E2NTShared91.117569.30381111
3x21NTlpl_off6.5962501021
3x22NTShared3.926254.176150021
E1x501NTShared18.35878.562710021
3x25NTShared12.65625.309221121
E1x50NTShared6.026254.814691121
LigNTShared9.7959.901351101
E3NTShared7.4253.592861121
1x31NTShared4.906251.84750021
2x572x60lpl_off4.51500021
2x573x32lpl_off4.507500021
2x577x42Shared17.387514.27490022
2x603x28Shared6.196256.309841111
2x60LigShared5.753756.100051110
2x63E1x52lpl_off8.09500022
3x28E1x50Shared4.04253.70511112
3x28E1x52Shared4.863.339271112
3x253x28Shared10.56.31251121
3x253x29Shared9.7012514.44051121
3x25E2Shared28.206219.06951121
3x26E2Shared13.69759.486611121
3x283x29Shared8.735.366931111
3x28LigShared4.918754.022341110
3x29E2Shared7.762511.04691111
3x29LigShared15.52629.977291110
3x32Liglpl_off9.04500010
3x33E2Shared11.23135.717081111
3x335x39Shared4.3658.089481112
3x335x43lpl_off4.607501111
3x33LigShared10.63888.17621110
3x365x47lpl_off4.4937500012
3x366x48Shared13.6656.314580011
3x374x53Shared4.312.739380112
3x374x56Shared4.701253.692340112
3x405x47Shared6.3353.623230222
4x594x60lpl_off4.1601122
4x595x39lpl_off5.4662501122
4x60E2Shared9.2137510.22941121
4x605x39Shared17.38515.90811122
5x36E2Shared12.66134.435211121
5x38E2Shared4.927.418961121
5x39E2Shared17.98259.472081121
5x42E2lpl_off7.392501021
E2E2Shared41.7442.99821111
5x40E2lpl_off7.0112501021
6x58E2Shared18.428819.15851121
6x54E2Shared4.10253.073181121
7x34E2Shared5.248757.158491111
E2LigShared4.28755.488281110
5x365x38Shared7.224.54251122
5x395x43lpl_off8.562501121
5x406x55Shared5.818754.38121021
5x435x47lpl_off4.3612501112
5x43LigShared3.857.266351110
5x476x52Shared5.23512.65520222
6x446x48Shared15.658811.20191221
6x447x45Shared6.646253.649581222
6x486x52lpl_off4.507501212
6x487x41Shared9.39753.782971212
6x487x45Shared3.8137510.25831212
6x48Liglpl_off4.02501210
6x55LigShared6.263.903540010
6x587x31Shared8.141253.428281122
E3E3Shared5.244.239061122
7x35LigShared5.04254.5950010
7x38LigShared16.87510.5080010
7x34NTShared4.0053.03751111
E1x48NTShared8.6156.211121
7x34LigShared8.02257.618281110
6x51LigShared3.52752.934270010
1x32NTShared3.193753.90751021
3x375x47lpl_off3.187500112
E1LigShared3.093.44250010
5x37E2lpl_off2.572501021
E1x49NTlpl_off2.542501021
1x33NTlpl_off2.3200021
2x64LigShared2.0451.772760010
2x563x32lpl_off2.022500021
1x357x35Shared1.70754.426090021
4x63E2Shared1.48750.8005210121
3x30E2lpl_off1.4500021
1x30NTShared0.54751.82750021
2x577x38lpl_on08.16490021
2x633x28lpl_on05.586250021
3x253x26lpl_on03.496771122
3x36Liglpl_on04.393440010
3x37Liglpl_on03.068070110
3x406x48lpl_on04.187190221
4x565x43lpl_on03.204110121
4x59E2lpl_on04.155311121
7x31E2lpl_on03.658280121
5x476x48lpl_on010.27070221
2x603x32lpl_on04.011821111
5x476x44lpl_on03.813390222
3x367x42lpl_on03.514530012
3x375x43lpl_on03.3350111
4x565x42lpl_on02.745680122
3x303x33lpl_on02.71630021
7x357x36lpl_on02.233850012
3x334x57lpl_on01.46131112
E1x48E1x49lpl_on01.139581122

Location and physicochemical properties of the interaction partners of this ligand

Interactions of this ligand

Difference Members
Id Description
lpl_off s1p_off
lpa_off
lpl_on s1p_on
lpa_on
Network Difference
Value lpl_off lpl_on
Imin 3.81125 2.9949
Number of Linked Nodes 253 261
Number of Specific Nodes 4 (1.58%) 12  (4.60%)
Number of Shared Nodes 249 (98.42%) 249  (95.40%)
Number of Links 280 292
Number of Specific Links 111 (39.64%) 123  (42.12%)
Number of Shared Links 169 (60.36%) 169  (57.88%)
Number of Hubs 29 37
Number of Specific Hubs 9 (31.03%) 17  (45.95%)
Number of Shared Hubs 20 (68.97%) 20  (54.05%)
Average % Shared Neighbours (Jaccard) 44.83
Average % Shared Neighbours (Otsuka) 53.40
Average % Shared Neighbours (Overlap Coefficient) 62.23
Average % Shared Cliques (k3-6) 88.89
Graphlets Similarity 0.704456
Paths Difference
Value lpl_off lpl_on
Number Of Nodes in MetaPath 49 39
Specific Nodes in MetaPath 29 (59.18%) 19  (48.72%)
Shared Nodes in MetaPath 249 (98.42%) 249  (98.42%)
Number Of Links MetaPath 47 40
Specific Links in MetaPath 37 (78.72%) 30  (75.00%)
Shared Links in MetaPath 169 (60.36%) 169  (60.36%)
Number of Shortest Paths 40313 54617
Length Of Smallest Path 3 3
Average Path Length 13.0107 13.7037
Length of Longest Path 30 32
Minimum Path Strength 0.18125 0.180469
Average Path Strength 6.10986 5.38862
Maximum Path Strength 54.55 39.7666
Minimum Path Correlation 0.70125 0.705
Average Path Correlation 0.903383 0.901729
Maximum Path Correlation 0.99 0.99
Minimum % Of Corr. Nodes 3.7037 3.44828
Average % Of Corr. Nodes 45.2089 43.8607
Maximum % Of Corr. Nodes 100 100
Minimum Path Hubs % 0 0
Average Path Hubs % 39.0088 46.1537
Maximum Path Hubs % 100 100

Details about the values in these tables can be found in the corresponding documentation page .

You can download a compressed (zip) file with structure(s), 3D outputs (as PyMol and VMD scripts) and numerical data files (as csv and plain text files).

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