Orange: nodes, hubs and links specific of m2_on_allo network

Green: nodes, hubs and links shared by both networks

Purple: nodes, hubs and links specific of m2_on network

Index: hub id, click on each number to highlight the corresponding hub in the 3D visualization.

Hub: the hub being considered.

Owner: the name of the network the hub belong to or "Shared" if the corresponding hub is present in both networks.

Avg Int. Strength: the average interaction strength of all the links of the corresponding hub in the corresponding network.

Num Of Links: the number of links of the corresponding hub in the corresponding network.

ConSurf: this column reports the ConSurf conservation grades of each hub.


Index Hub Owner m2_on_allo Avg Int. Strength m2_on Avg Int. Strength m2_on_allo Num Of Links m2_on Num Of Links ConSurf
11x47 m2_on_allo1.713.085427
2I1x50 m2_on_allo6.3379.43539
32x56 m2_on_allo5.79758.335428
42x63 m2_on_allo5.65759.39427
52x66 m2_on_allo4.123752.575426
64x61 m2_on_allo2.788753.385428
74x68 m2_on_allo1.701252.025424
8E2.E175 m2_on_allo4.31254.66435
95x48 m2_on_allo3.555.93667438
106x44 m2_on_allo4.0016.43667539
116x58 m2_on_allo8.263754.57333434
127x33 m2_on_allo3.01754.17425
137x34 m2_on_allo21.316.38333436
147x45 m2_on_allo8.2537512.63429
157x49 m2_on_allo6.39510.18429
168x50 m2_on_allo5.234178.35667639
17Allo1 m2_on_allo14.53220900
182x42 Shared4.0354.01558
192x44 Shared3.635.0675447
202x50 Shared5.813758.9875449
212x57 Shared4.798756.115449
222x60 Shared7.46.348458
23E1x50 Shared5.74757.60333869
243x33 Shared7.339179.966658
253x37 Shared5.916.7925449
263x49 Shared7.55257.8975449
273x51 Shared6.5097.922559
28I2x53 Shared7.525837.16833669
29I2x57 Shared7.63257.664458
304x57 Shared6.52257.43714678
314x64 Shared5.571675.955646
325x47 Shared5.699178.03649
335x58 Shared7.323757.2675449
346x48 Shared8.8998.12333569
356x51 Shared8.36255.815468
36E3.I417 Shared6.4054.0175547
377x38 Shared8.6056.95567
387x39 Shared3.19756.874459
397x42 Shared6.813336.355669
407x53 Shared6.2026.0725549
41Lig Shared9.116367.792221190
421x50 m2_on3.0555.3125349
432x46 m2_on5.931675.545349
442x65 m2_on1.868332.534356
453x28 m2_on5.677.0125347
464x50 m2_on4.631674.985349
47E2x52 m2_on8.126.9625247
485x41 m2_on4.873335.4725347
   
Orange: nodes, hubs and links specific of m2_on_allo network

Green: nodes, hubs and links shared by both networks

Purple: nodes, hubs and links specific of m2_on network

Index: link id, click on each number to highlight the corresponding link in the 3D visualization.

Node1 Node2: the two nodes of the corresponding link.

Owner: the name of the network the link belong to or "Shared" if the corresponding link is present in both networks.

Recurrence: the relative Recurrence in the filtered pool of shortest paths.

Hub1?, Hub2?: "Yes" if the corresponding node has more than 3 links, otherwise "No".

ConSurf1, ConSurf2: these columns report the ConSurf conservation grades of the two nodes involved in a link.


Index Node1 Node2 Owner m2_on_allo Recurrence m2_on Recurrence m2_on_allo Hub1? m2_on Hub1? m2_on_allo Hub2? m2_on Hub2? ConSurf1 ConSurf2
12x57 7x42 m2_on_allo18.04170YesYesYesYes99
26x48 7x45 m2_on_allo50.26481.6129YesYesYesNo99
37x45 7x49 m2_on_allo42.04410YesNoYesNo99
47x49 7x50 m2_on_allo33.84110YesNoNoNo99
51x50 2x47 m2_on_allo14.55110NoYesNoNo99
61x54 2x47 m2_on_allo13.59560NoNoNoNo79
71x54 2x44 m2_on_allo12.63421.86853NoNoYesYes77
81x53 8x50 m2_on_allo17.50630NoNoYesNo99
95x54 6x44 m2_on_allo62.470NoNoYesNo99
103x47 5x54 m2_on_allo40.02661.7468NoNoNoNo99
113x51 3x52 m2_on_allo11.87996.64638YesYesNoNo96
123x52 I2x53 m2_on_allo11.24396.7255NoNoYesYes69
135x54 6x41 m2_on_allo22.55580NoNoNoNo98
147x45 7x48 m2_on_allo10.36530YesNoNoNo96
152x46 7x49 m2_on_allo11.69350.389531NoYesYesNo99
162x46 3x42 m2_on_allo11.19360NoYesNoNo99
172x45 3x42 m2_on_allo10.61680NoNoNoNo99
182x45 4x46 m2_on_allo10.08430NoNoNoNo99
192x60 2x63 m2_on_allo15.690YesYesYesNo87
203x21 E1x50 m2_on_allo11.77040NoNoYesYes79
213x29 3x33 m2_on_allo16.0390NoNoYesYes78
223x37 Lig m2_on_allo12.66970YesYesYesYes90
233x33 4x61 m2_on_allo17.87610YesYesYesNo88
245x58 6x37 m2_on_allo31.21435.34388YesYesNoNo99
255x62 6x37 m2_on_allo11.92720NoNoNoNo89
265x62 6x34 m2_on_allo10.23520.0182593NoNoNoNo88
276x33 6x37 m2_on_allo17.8113.57273NoNoNoNo89
285x65 6x33 m2_on_allo16.35261.78941NoNoNoNo88
295x65 6x30 m2_on_allo10.06060NoNoNoNo89
306x58 Allo1 m2_on_allo10.01040YesNoYesNo40
317x33 E3.I417 m2_on_allo11.44510YesNoYesYes57
327x38 Allo1 m2_on_allo43.99050YesYesYesNo70
332x63 Allo1 m2_on_allo17.1720YesNoYesNo70
342x60 7x38 Shared23.04137.9124YesYesYesYes87
357x38 Lig Shared56.210616.1229YesYesYesYes70
366x48 Lig Shared10048.8618YesYesYesYes90
371x50 7x50 Shared16.444350.8217NoYesNoNo99
381x53 7x50 Shared18.44412.8606NoNoNoNo99
396x44 6x48 Shared59.355135.8186YesNoYesYes99
403x47 5x57 Shared21.529422.8119NoNoNoNo98
413x51 5x57 Shared18.899616.1473YesYesNoNo98
423x47 5x58 Shared22.570625.5021NoNoYesYes99
433x50 5x58 Shared14.231626.2203NoNoYesYes99
443x46 3x50 Shared11.844413.9988NoNoNoNo99
452x42 3x46 Shared15.095453.4571YesYesNoNo89
465x58 6x41 Shared20.757334.9239YesYesNoNo98
472x63 E1x50 Shared24.937115.3682YesNoYesYes79
483x28 E1x50 Shared12.956735.9099NoYesYesYes79
49E1x50 E1x51 Shared11.770410.2921YesYesNoNo94
505x47 6x48 Shared12.921210.0243YesYesYesYes99
515x47 5x48 Shared11.356315.6056YesYesYesNo98
527x42 Lig Shared17.346544.1935YesYesYesYes90
533x28 3x29 Shared15.178215.0213NoYesNoNo77
543x33 Lig Shared24.369221.0651YesYesYesYes80
552x61 7x39 m2_on1.97913.0493NoNoYesYes79
562x57 7x39 m2_on0100YesYesYesYes99
571x43 2x57 m2_on2.2274811.059NoNoYesYes89
581x46 2x57 m2_on6.6173697.3402NoNoYesYes89
591x46 1x50 m2_on093.7492NoNoNoYes89
601x49 7x50 m2_on038.308NoNoNoNo99
611x49 1x52 m2_on2.0677436.689NoNoNoNo98
621x50 2x50 m2_on064.0414NoYesYesYes99
631x52 8x54 m2_on0.9554831.759NoNoNoNo89
641x56 8x54 m2_on025.1309NoNoNoNo99
651x56 8x50 m2_on1.0323921.6859NoNoYesNo99
668x50 I1x50 m2_on8.9631716.4273YesNoYesNo99
672x46 2x50 m2_on0.26327560.28NoYesYesYes99
682x46 3x43 m2_on058.4723NoYesNoNo99
693x43 7x53 m2_on1.053157.4194NoNoYesYes99
703x46 7x53 m2_on4.9489741.1869NoNoYesYes99
712x42 3x49 m2_on9.1347441.4729YesYesYesYes89
723x49 I2x57 m2_on1.2986221.2051YesYesYesYes98
732x38 I2x57 m2_on0.8756110.4747NoNoYesYes78
747x39 7x42 m2_on057.1272YesYesYesYes99
754x57 Lig m2_on3.978733.6336YesYesYesYes80
763x37 4x57 m2_on1.7009326.975YesYesYesYes98
773x37 4x53 m2_on9.6760820.9921YesYesNoNo99
783x38 4x53 m2_on010.6452NoNoNoNo89
792x60 7x39 m2_on9.1169947.8393YesYesYesYes89
802x60 3x28 m2_on047.5533YesYesNoYes87
817x38 7x42 m2_on8.8655521.6616YesYesYesYes79
822x63 E2.E175 m2_on6.9871312.8363YesNoYesNo75
833x29 E2x52 m2_on020.4747NoNoNoYes77
84E2.F180 E2x52 m2_on2.3280645.8065NoNoNoYes77
854x64 E2.F180 m2_on0.091702435.35YesYesNoNo67
864x64 E2.Q179 m2_on8.4691621.3938YesYesNoNo67
87E2.Q179 E2.V171 m2_on014.3092NoNoNoNo74
88E2.R169 E2.V171 m2_on010.7486NoNoNoNo84
893x33 7x38 m2_on5.7062627.0237YesYesYesYes87
903x33 E2x52 m2_on050YesYesNoYes87
913x50 7x53 m2_on1.34312.538NoNoYesYes99
923x49 I2x53 m2_on4.0970316.8168YesYesYesYes99
933x56 I2x53 m2_on012.8058NoNoYesYes79
944x57 4x61 m2_on012.4041YesYesYesNo88
953x30 4x61 m2_on4.5644110.493NoNoYesNo88
965x48 6x56 m2_on8.063911.7468YesNoNoNo87
975x51 6x44 m2_on3.0853440.6634NoNoYesNo79
985x51 5x52 m2_on036.7681NoNoNoNo75
995x52 5x56 m2_on035.983NoNoNoNo55
1005x55 5x56 m2_on035.5752NoNoNoNo65
1015x55 6x41 m2_on2.1328235.2161NoNoNoNo68
1027x34 7x38 m2_on032.4772YesNoYesYes67
1037x34 E3.I417 m2_on9.2027824.0292YesNoYesYes67
1047x30 E3.I417 m2_on015.5873NoNoYesYes77
1057x30 7x33 m2_on3.8367113.3962NoNoYesNo75
1066x54 7x33 m2_on3.8367111.1929NoNoYesNo75
1073x33 4x57 m2_on3.6503512.2763YesYesYesYes88

Here, those paths that begin and end at given residue pair(s) or that pass through a residue are used to generate a novel metapath. Such a path filtering is particularly recommended if some information on allosteric residues is available. The selection syntax for a residue pair ("Pairs") is C:C:c534,A:A:?600 (the lower-case "c" stands for cytosine and "?" indicates any non standard amino acid or nucleotide residue). Selection of more than one apical residue pair has the following syntax: C:C:c534,A:A:?600,C:C:c534,A:A:E41. Only one residue can be selected as a tail ("Tail"). For midway residue(s), each residue must be separated by a comma as well e.g. A:A:?600,A:A:E41.

Midway



Download PSN data

2D representation of the global metapath, ligand(s) interactions and
histograms of path distribution according to several parameters
(click on the image to enlarge it 🔍):

A 2D representation of the global communication in the network.

Number of shortest communication paths as a function of the average residue correlation.

Number of shortest communication paths as a function of the average interaction strength of their links.

Number of shortest communication paths as a function of the % of hub nodes in each path.

Number of shortest communication paths as a function of the number of nodes in each path.

Number of shortest communication paths as a function of the % of correlated nodes in each path.


2D representation of the interactions of this orthosteric/allosteric ligand.


Node1Node2OwnerNet1LinkStrengthNet2LinkStrengthComm1Comm2Node1ShellNode2Shell
2x533x36m2_on4.6400121
2x563x32Shared10.317.3651121
2x567x42Shared6.366.9951121
2x577x39m2_on11.6300022
2x607x38Shared9.9314.3951121
2x607x39Shared5.794.341122
2x607x42m2_on4.9601121
3x29E2x52m2_on5.7100022
3x327x42Shared8.058.0451111
3x32LigShared5.935.931110
3x334x57Shared13.59.6451111
3x33E2x52m2_on12.0901112
3x336x51Shared4.967.9451111
3x337x38Shared5.965.461111
3x33LigShared13.3214.4651110
3x36LigShared7.8712.450010
3x373x41Shared8.413.5051112
3x374x53Shared4.478.1951112
3x374x56m2_on4.1201112
3x374x57Shared10.177.911111
3x406x48m2_on6.1300021
4x564x57Shared9.113.9851021
4x574x61m2_on3.5201112
4x575x43Shared8.499.7051112
4x57LigShared5.974.651110
5x476x44Shared5.365.361122
5x476x48Shared4.014.011121
5x476x52Shared14.516.3151122
6x446x48Shared10.025.0151121
6x476x48Shared6.065.4551121
6x477x45Shared11.712.431122
6x487x45Shared13.569.6051112
6x48LigShared8.9620.411110
6x516x52Shared4.658.141112
6x516x55Shared5.053.7851112
6x517x38m2_on5.9601111
6x517x41m2_on4.0301111
6x51LigShared10.2413.581110
7x347x38m2_on7.7201121
7x387x42Shared4.968.9351111
7x38LigShared7.1710.791110
7x397x42m2_on8.6801021
7x41LigShared5.554.911010
7x42LigShared5.124.881110
4x575x461Shared1.33.241111
2x532x56m2_on_allo06.190122
2x537x42m2_on_allo05.440121
2x577x42m2_on_allo06.5850021
2x60Allo1m2_on_allo06.8951122
3x293x33m2_on_allo04.10021
3x37Ligm2_on_allo04.031110
3x406x44m2_on_allo03.930022
4x61E2x52m2_on_allo03.680022
5x461Ligm2_on_allo04.1850110
7x34Allo1m2_on_allo056.521122
7x38Allo1m2_on_allo03.4451112
3x334x61m2_on_allo02.421112

Location and physicochemical properties of the interaction partners of this ligand

Interactions of this ligand

Difference Members
Id Description
m2_on_allo 7T94-M2-Acetylcholine-PubChem 57664406-chim(NtGi1-Go)/&β;1/&γ;2
6OIK-M2-Iperoxo-LY2119620-chim(NtGi1-Go)/&β;1/&γ;2
m2_on 7T8X-M2-Acetylcholine-chim(NtGi1-Go)/&β;1/&γ;2
Network Difference
Value m2_on_allo m2_on
Imin 3.135 3.39
Number of Linked Nodes 269 256
Number of Specific Nodes 18 (6.69%) 5  (1.95%)
Number of Shared Nodes 251 (93.31%) 251  (98.05%)
Number of Links 305 277
Number of Specific Links 126 (41.31%) 98  (35.38%)
Number of Shared Links 179 (58.69%) 179  (64.62%)
Number of Hubs 41 31
Number of Specific Hubs 17 (41.46%) 7  (22.58%)
Number of Shared Hubs 24 (58.54%) 24  (77.42%)
Average % Shared Neighbours (Jaccard) 45.44
Average % Shared Neighbours (Otsuka) 54.98
Average % Shared Neighbours (Overlap Coefficient) 64.64
Average % Shared Cliques (k3-6) 59.56
Graphlets Similarity 0.607404
Paths Difference
Value m2_on_allo m2_on
Number Of Nodes in MetaPath 53 68
Specific Nodes in MetaPath 20 (37.74%) 35  (51.47%)
Shared Nodes in MetaPath 251 (93.31%) 251  (93.31%)
Number Of Links MetaPath 54 74
Specific Links in MetaPath 33 (61.11%) 53  (71.62%)
Shared Links in MetaPath 179 (58.69%) 179  (58.69%)
Number of Shortest Paths 60097 40868
Length Of Smallest Path 3 3
Average Path Length 11.8109 12.8347
Length of Longest Path 24 26
Minimum Path Strength 0.62 1.34
Average Path Strength 6.41276 5.90057
Maximum Path Strength 39.68 13.91
Minimum Path Correlation 0.7 0.7
Average Path Correlation 0.925119 0.933502
Maximum Path Correlation 0.995 0.99
Minimum % Of Corr. Nodes 4.7619 5.26316
Average % Of Corr. Nodes 49.0435 55.6466
Maximum % Of Corr. Nodes 100 100
Minimum Path Hubs % 0 0
Average Path Hubs % 50.4874 46.8997
Maximum Path Hubs % 100 100

Details about the values in these tables can be found in the corresponding documentation page .

You can download a compressed (zip) file with structure(s), 3D outputs (as PyMol and VMD scripts) and numerical data files (as csv and plain text files).

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