Orange: nodes, hubs and links specific of m4_on_allo network

Green: nodes, hubs and links shared by both networks

Purple: nodes, hubs and links specific of m4_on network

Index: hub id, click on each number to highlight the corresponding hub in the 3D visualization.

Hub: the hub being considered.

Owner: the name of the network the hub belong to or "Shared" if the corresponding hub is present in both networks.

Avg Int. Strength: the average interaction strength of all the links of the corresponding hub in the corresponding network.

Num Of Links: the number of links of the corresponding hub in the corresponding network.

ConSurf: this column reports the ConSurf conservation grades of each hub.


Index Hub Owner m4_on_allo Avg Int. Strength m4_on Avg Int. Strength m4_on_allo Num Of Links m4_on Num Of Links ConSurf
11x34 m4_on_allo00414
21x43 m4_on_allo00438
31x52 m4_on_allo00428
42x42 m4_on_allo66.666750438
52x44 m4_on_allo33.33330428
62x51 m4_on_allo00439
72x65 m4_on_allo00437
8E2.V180 m4_on_allo00435
96x35 m4_on_allo00427
107x34 m4_on_allo33.333325436
117x47 m4_on_allo00428
12Allo1 m4_on_allo1000800
132x50 Shared100100449
142x57 Shared66.666750459
152x60 Shared10075548
16E1x50 Shared100100669
173x33 Shared66.666775559
183x37 Shared66.666725449
193x49 Shared100100449
203x51 Shared66.666750449
21I2x53 Shared33.3333100459
22I2x57 Shared100100559
234x57 Shared100100558
24E2.R178 Shared66.666725445
25E2x52 Shared33.3333100457
26E2.Q188 Shared33.333325448
27E2.F189 Shared66.666725548
285x47 Shared100100569
295x48 Shared025558
305x58 Shared66.666775669
316x44 Shared100100459
326x48 Shared100100479
336x51 Shared66.6667100569
347x38 Shared66.666775457
357x42 Shared100100449
367x53 Shared66.6667100659
378x50 Shared66.6667100549
388x54 Shared025449
39Lig Shared10010011140
401x54 m4_on00248
41I1x50 m4_on33.333350349
422x40 m4_on33.333350259
432x46 m4_on075359
442x66 m4_on00355
453x28 m4_on33.333350357
463x32 m4_on10050349
474x64 m4_on33.33330247
485x36 m4_on00347
496x30 m4_on00349
506x40 m4_on00249
51E3.I430 m4_on33.33330346
527x45 m4_on050349
538x53 m4_on00249
541x31 m4_on00240
   
Orange: nodes, hubs and links specific of m4_on_allo network

Green: nodes, hubs and links shared by both networks

Purple: nodes, hubs and links specific of m4_on network

Index: link id, click on each number to highlight the corresponding link in the 3D visualization.

Node1 Node2: the two nodes of the corresponding link.

Owner: the name of the network the link belong to or "Shared" if the corresponding link is present in both networks.

Recurrence: the relative Recurrence in the filtered pool of shortest paths.

Hub1?, Hub2?: "Yes" if the corresponding node has more than 3 links, otherwise "No".

ConSurf1, ConSurf2: these columns report the ConSurf conservation grades of the two nodes involved in a link.


Index Node1 Node2 Owner m4_on_allo Recurrence m4_on Recurrence m4_on_allo Hub1? m4_on Hub1? m4_on_allo Hub2? m4_on Hub2? ConSurf1 ConSurf2
11x39 7x39 m4_on_allo17.22012.18622NoNoNoNo79
27x39 7x42 m4_on_allo14.82730NoNoYesYes99
32x56 7x42 m4_on_allo10.48439.29212NoNoYesYes99
41x50 2x50 m4_on_allo43.06253.10189NoNoYesYes99
51x50 2x51 m4_on_allo41.32170NoNoYesNo99
61x54 2x51 m4_on_allo35.93555.17433NoYesYesNo89
71x54 2x44 m4_on_allo35.01968.25454NoYesYesNo88
81x57 2x44 m4_on_allo31.2719.27045NoNoYesNo98
91x57 8x50 m4_on_allo30.32180NoNoYesYes99
108x50 I1x50 m4_on_allo24.58380.162544YesYesNoYes99
111x52 8x54 m4_on_allo11.32742.11037YesNoYesYes89
122x60 7x39 m4_on_allo12.31010YesYesNoNo89
137x38 Lig m4_on_allo51.21779.47363YesYesYesYes70
142x46 3x42 m4_on_allo33.27577.29824NoYesNoNo99
152x45 3x42 m4_on_allo32.23856.2715NoNoNoNo99
162x45 4x46 m4_on_allo28.0292.11037NoNoNoNo99
172x42 4x46 m4_on_allo26.96150YesNoNoNo89
182x42 3x49 m4_on_allo14.78797.47975YesNoYesYes89
193x32 7x42 m4_on_allo10.33884.31826NoYesYesYes99
202x50 7x49 m4_on_allo49.05531.58752YesYesNoNo99
212x63 Allo1 m4_on_allo22.18480NoNoYesNo80
222x63 E1x50 m4_on_allo10.00821.09988NoNoYesYes89
232x63 E2.Q184 m4_on_allo11.8433.48387NoNoNoNo85
24E2.N183 E2.Q184 m4_on_allo10.75121.1649NoNoNoNo45
25Allo1 E2x51 m4_on_allo24.95070YesNoNoNo04
26E2.R178 E2.V180 m4_on_allo10.40259.73099YesYesYesNo55
273x37 Lig m4_on_allo10.9157.64771YesYesYesYes90
286x44 6x48 m4_on_allo10.53291.23534YesYesYesYes99
293x48 5x57 m4_on_allo10.21757.84006NoNoNoNo78
305x58 5x61 m4_on_allo13.95084.55937YesYesNoNo99
314x65 4x66 m4_on_allo21.90585.75136NoNoNoNo76
324x63 4x66 m4_on_allo18.73963.83876NoNoNoNo76
334x62 4x63 m4_on_allo12.38890NoNoNoNo67
34E2.Q188 E2.V180 m4_on_allo12.8568.4496YesYesYesNo85
354x65 E2.Q188 m4_on_allo18.49094.40495NoNoYesYes78
364x64 E2.Q188 m4_on_allo20.50164.13946NoYesYesYes78
373x33 4x61 m4_on_allo23.22510YesYesNoNo98
384x61 E2.F189 m4_on_allo22.43050NoNoYesYes88
395x39 E2.F189 m4_on_allo23.22816.9569NoNoYesYes88
405x36 5x39 m4_on_allo20.93236.40154NoYesNoNo78
415x36 5x37 m4_on_allo16.32243.2238NoYesNoNo75
425x37 6x59 m4_on_allo14.00842.15371NoNoNoNo57
436x52 Lig m4_on_allo12.37680NoNoYesYes90
445x62 5x63 m4_on_allo13.68390NoNoNoNo84
455x63 5x66 m4_on_allo11.66411.57939NoNoNoNo47
466x34 6x38 m4_on_allo21.70874.72733NoNoNoNo98
471x34 1x35 m4_on_allo11.62470YesNoNoNo47
481x35 1x39 m4_on_allo13.62930NoNoNoNo77
496x35 6x38 m4_on_allo15.70380YesNoNoNo78
504x64 E2.F189 m4_on_allo21.81184.78964NoYesYesYes78
517x38 Allo1 m4_on_allo45.65250YesYesYesNo70
522x57 7x42 Shared10.099217.1295YesYesYesYes99
532x53 2x56 Shared13.277525.7985NoNoNoNo99
542x53 7x46 Shared12.331325.7822NoNoNoNo99
552x50 7x46 Shared12.146325.8987YesYesNoNo99
561x60 I1x50 Shared22.682218.419NoNoNoYes89
571x60 8x53 Shared18.642516.4739NoNoNoYes89
581x56 8x53 Shared17.623511.2101NoNoNoYes99
591x56 8x54 Shared16.586310.1969NoNoYesYes99
606x48 Lig Shared89.133564.1183YesYesYesYes90
616x48 7x45 Shared96.848966.8193YesYesNoYes99
627x45 7x49 Shared10075.3312NoYesNoNo99
632x46 7x49 Shared99.217573.8277NoYesNoNo99
643x32 Lig Shared14.014523.4064NoYesYesYes90
652x46 3x43 Shared81.0421100NoYesNoNo99
66E2.V180 E2x51 Shared24.195618.2564YesNoNoNo54
673x33 Lig Shared41.546112.5999YesYesYesYes90
683x43 7x53 Shared80.29999.8347NoNoYesYes99
693x50 7x53 Shared38.580141.4894NoNoYesYes99
703x50 5x58 Shared37.949241.2456NoNoYesYes99
713x47 5x58 Shared16.125359.2881NoNoYesYes99
723x47 5x57 Shared12.140256.5519NoNoNoNo98
736x40 7x53 Shared38.57150.0312NoYesYesYes99
745x58 6x40 Shared37.849143.2368YesYesNoYes99
753x33 E2x52 Shared24.335114.9432YesYesYesYes97
76E2.F189 E2x52 Shared22.585113.4343YesYesYesYes87
775x58 6x37 Shared40.60919.657YesYesNoNo99
785x62 6x37 Shared38.819618.3079NoNoNoNo89
795x62 6x34 Shared23.698216.7881NoNoNoNo89
802x46 2x50 m4_on026.8767NoYesYesYes99
812x43 7x53 m4_on1.1585234.4946NoNoYesYes89
822x40 2x43 m4_on033.6927NoYesNoNo98
831x57 2x40 m4_on010.2809NoNoNoYes99
842x40 I1x50 m4_on020.1067NoYesNoYes99
853x51 5x57 m4_on0.14860648.1998YesYesNoNo98
863x51 3x52 m4_on033.8688YesYesNoNo97
873x52 I2x53 m4_on7.2028632.4059NoNoYesYes79
88I2x53 I2x57 m4_on0.094016317.8609YesYesYesYes99
893x49 I2x53 m4_on9.2833510.1211YesYesYesYes99
903x28 3x32 m4_on032.6172NoYesNoYes79
913x28 E1x50 m4_on2.1472130.6504NoYesYesYes79
92E1x50 E1x51 m4_on021.5182YesYesNoNo95
932x66 E1x51 m4_on7.4394216.2626NoYesNoNo55
94E2x51 Lig m4_on018.9527NoNoYesYes40
953x51 3x55 m4_on2.0531910.9582YesYesNoNo99
965x47 6x48 m4_on011.7601YesYesYesYes99
975x47 5x48 m4_on3.7485210.8851YesYesYesYes98
986x30 6x34 m4_on010.6439NoYesNoNo99
997x34 Lig m4_on011.2264YesNoYesYes60
1001x32 2x66 m4_on010.4841NoNoNoYes05
1012x56 3x32 m4_on3.0388516.5118NoNoNoYes99

Here, those paths that begin and end at given residue pair(s) or that pass through a residue are used to generate a novel metapath. Such a path filtering is particularly recommended if some information on allosteric residues is available. The selection syntax for a residue pair ("Pairs") is C:C:c534,A:A:?600 (the lower-case "c" stands for cytosine and "?" indicates any non standard amino acid or nucleotide residue). Selection of more than one apical residue pair has the following syntax: C:C:c534,A:A:?600,C:C:c534,A:A:E41. Only one residue can be selected as a tail ("Tail"). For midway residue(s), each residue must be separated by a comma as well e.g. A:A:?600,A:A:E41.

Midway



Download PSN data

2D representation of the global metapath, ligand(s) interactions and
histograms of path distribution according to several parameters
(click on the image to enlarge it 🔍):

A 2D representation of the global communication in the network.

Number of shortest communication paths as a function of the average residue correlation.

Number of shortest communication paths as a function of the average interaction strength of their links.

Number of shortest communication paths as a function of the % of hub nodes in each path.

Number of shortest communication paths as a function of the number of nodes in each path.

Number of shortest communication paths as a function of the % of correlated nodes in each path.


2D representation of the interactions of this orthosteric/allosteric ligand.


Node1Node2OwnerNet1LinkStrengthNet2LinkStrengthComm1Comm2Node1ShellNode2Shell
2x563x32Shared9.9411.291121
2x567x42Shared6.99755.936671122
2x603x28m4_on5.30500122
2x607x38Shared17.622515.55330121
3x327x42Shared10.9159.961112
3x32LigShared4.7657.421110
3x334x57Shared13.862519.61331111
3x33E2x52Shared5.65256.851112
3x336x51Shared6.45256.286671111
3x337x38m4_on5.4601111
3x33LigShared8.6313.93671110
3x36LigShared6.85758.926670010
3x373x41Shared5.60753.741112
3x374x53Shared5.58754.966671112
3x374x57Shared8.4759.041111
3x37LigShared3.97257.183331110
3x406x44Shared4.58754.803331022
3x406x48m4_on4.2901021
4x564x57Shared5.97756.453330021
4x575x43Shared8.1859.31112
4x57LigShared11.6454.61110
E2.V180E2x51Shared10.48755.683330021
5x475x48Shared9.0310.31671122
5x476x44Shared4.8255.003331122
5x476x48m4_on6.01501121
5x476x52Shared17.217516.111121
6x446x48Shared7.5158.353331121
6x447x45m4_on4.227501122
6x486x52m4_on3.672501111
6x487x41Shared8.16258.706671111
6x487x45Shared9.0414.31331112
6x48LigShared8.99131110
6x516x52m4_on5.232501111
6x516x55Shared6.6255.046671112
6x517x38Shared6.4554.963331111
6x517x41Shared4.034.031111
6x51LigShared11.28.643331110
6x54E3.I430m4_on4.007500022
6x587x34Shared4.80257.910021
7x34E3.I430Shared8.5159.786670012
7x387x42m4_on6.701112
7x38LigShared7.92255.573331110
7x41LigShared4.91256.041110
3x283x32m4_on4.187500221
E2x51Ligm4_on7.92500010
7x34Ligm4_on4.87500010
5x461LigShared3.00254.870010
4x61E2x52Shared2.9455.40122
7x31Ligm4_on2.557500010
E3.S428Ligm4_on0.772500010
2x60Allo1m4_on_allo05.053330122
3x334x61m4_on_allo04.433331112
Allo1E2x51m4_on_allo031.980121
5x486x52m4_on_allo05.426670121
6x52Ligm4_on_allo04.573331110
6x547x34m4_on_allo05.040021
7x31Allo1m4_on_allo07.326670012
7x34Allo1m4_on_allo029.320012
7x38Allo1m4_on_allo05.561112
6x61E3.S428m4_on_allo00.5733330021

Location and physicochemical properties of the interaction partners of this ligand

Interactions of this ligand

Difference Members
Id Description
m4_on_allo 7TRP-M4-Iperoxo-LY2033298-Gi1/&β;1/&γ;2
7TRQ-M4-Iperoxo-VU0467154-Gi1/&β;1/&γ;2
7V68-M4-Iperoxo-PubChem 57664406-Gi1/&β;1/&γ;2
m4_on 7TRS-M4-Acetylcholine-Gi1/&β;1/&γ;2
7TRK-M4-Iperoxo-Gi1/&β;1/&γ;2
8E9X-M4-2-Deoxycytidine-chim(NtGi1-Go)/&β;1/&γ;2
7V6A-M4-PubChem 9864275-Gi1/&β;1/&γ;2
Network Difference
Value m4_on_allo m4_on
Imin 3.99333 3.58
Number of Linked Nodes 273 277
Number of Specific Nodes 3 (1.10%) 7  (2.53%)
Number of Shared Nodes 270 (98.90%) 270  (97.47%)
Number of Links 297 306
Number of Specific Links 76 (25.59%) 85  (27.78%)
Number of Shared Links 221 (74.41%) 221  (72.22%)
Number of Hubs 39 42
Number of Specific Hubs 12 (30.77%) 15  (35.71%)
Number of Shared Hubs 27 (69.23%) 27  (64.29%)
Average % Shared Neighbours (Jaccard) 61.60
Average % Shared Neighbours (Otsuka) 69.49
Average % Shared Neighbours (Overlap Coefficient) 78.00
Average % Shared Cliques (k3-6) 61.54
Graphlets Similarity 0.611478
Paths Difference
Value m4_on_allo m4_on
Number Of Nodes in MetaPath 76 50
Specific Nodes in MetaPath 41 (53.95%) 15  (30.00%)
Shared Nodes in MetaPath 270 (98.90%) 270  (98.90%)
Number Of Links MetaPath 79 50
Specific Links in MetaPath 51 (64.56%) 22  (44.00%)
Shared Links in MetaPath 221 (74.41%) 221  (74.41%)
Number of Shortest Paths 65669 63257
Length Of Smallest Path 3 3
Average Path Length 14.9281 13.963
Length of Longest Path 33 29
Minimum Path Strength 0.486667 0.38625
Average Path Strength 6.57738 6.2759
Maximum Path Strength 30.65 15.1962
Minimum Path Correlation 0.7 0.7
Average Path Correlation 0.923324 0.915009
Maximum Path Correlation 0.99 0.99
Minimum % Of Corr. Nodes 3.22581 3.7037
Average % Of Corr. Nodes 43.7148 41.0635
Maximum % Of Corr. Nodes 100 100
Minimum Path Hubs % 0 0
Average Path Hubs % 38.1115 49.0896
Maximum Path Hubs % 100 100

Details about the values in these tables can be found in the corresponding documentation page .

You can download a compressed (zip) file with structure(s), 3D outputs (as PyMol and VMD scripts) and numerical data files (as csv and plain text files).

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