Orange: nodes, hubs and links specific of nop_off network

Green: nodes, hubs and links shared by both networks

Purple: nodes, hubs and links specific of nop_on network

Index: hub id, click on each number to highlight the corresponding hub in the 3D visualization.

Hub: the hub being considered.

Owner: the name of the network the hub belong to or "Shared" if the corresponding hub is present in both networks.

Avg Int. Strength: the average interaction strength of all the links of the corresponding hub in the corresponding network.

Num Of Links: the number of links of the corresponding hub in the corresponding network.

ConSurf: this column reports the ConSurf conservation grades of each hub.


Index Hub Owner nop_off Avg Int. Strength nop_on Avg Int. Strength nop_off Num Of Links nop_on Num Of Links ConSurf
11x42 nop_off3.894173.2427
21x47 nop_off3.05253.88667436
32x40 nop_off6.210837.19428
42x41 nop_off3.253.595426
52x45 nop_off10.88588.81667439
62x57 nop_off4.49756.485427
7E1x49 nop_off6.505835.27333434
83x41 nop_off4.120831.26415
93x50 nop_off5.270423.605829
104x49 nop_off4.366671.97333436
114x50 nop_off7.7683312.53439
125x35 nop_off7.024.56333534
135x461 nop_off5.099175.715426
146x44 nop_off8.279174.15333439
156x49 nop_off3.42.99333436
168x50 nop_off6.551113.65667638
171x36 Shared3.670835.04444
181x39 Shared4.151334.0125547
192x42 Shared6.292675.06667567
20E1x50 Shared7.2686710.676558
21E1x52 Shared9.907339.816556
223x34 Shared4.650676.1545
235x58 Shared6.831335.328559
246x48 Shared8.878335.5925648
256x52 Shared10.26426.92447
267x42 Shared6.040485.0325746
27Lig Shared10.16737.238710230
281x35 nop_on7.2254.4175245
291x53 nop_on3.056672.695149
301x57 nop_on5.343333.0725247
312x50 nop_on6.872226.135349
322x64 nop_on3.455.1575344
333x29 nop_on5.811673.28244
34E2x50 nop_on6.9057.6275249
35E2x52 nop_on3.0552.96244
365x47 nop_on8.934444.3625348
375x51 nop_on1.683332.845246
387x45 nop_on7.543335.295369
397x53 nop_on10.06894.0525349
   
Orange: nodes, hubs and links specific of nop_off network

Green: nodes, hubs and links shared by both networks

Purple: nodes, hubs and links specific of nop_on network

Index: link id, click on each number to highlight the corresponding link in the 3D visualization.

Node1 Node2: the two nodes of the corresponding link.

Owner: the name of the network the link belong to or "Shared" if the corresponding link is present in both networks.

Recurrence: the relative Recurrence in the filtered pool of shortest paths.

Hub1?, Hub2?: "Yes" if the corresponding node has more than 3 links, otherwise "No".

ConSurf1, ConSurf2: these columns report the ConSurf conservation grades of the two nodes involved in a link.


Index Node1 Node2 Owner nop_off Recurrence nop_on Recurrence nop_off Hub1? nop_on Hub1? nop_off Hub2? nop_on Hub2? ConSurf1 ConSurf2
11x39 7x42 nop_off22.97230YesYesYesYes76
26x48 7x42 nop_off61.99920YesYesYesYes86
36x44 6x48 nop_off1006.16402YesNoYesYes98
43x39 6x44 nop_off78.87210NoNoYesNo99
53x35 3x39 nop_off77.67510NoNoNoNo89
62x53 3x35 nop_off76.46990NoNoNoNo78
72x53 7x46 nop_off75.25650NoNoNoNo78
82x54 7x46 nop_off14.15720NoNoNoNo58
92x50 7x46 nop_off62.32490NoYesNoNo98
107x49 7x53 nop_off36.64090NoNoNoYes99
117x53 8x50 nop_off33.76630NoYesYesNo98
122x40 8x50 nop_off16.9910YesNoYesNo88
132x40 I1x50 nop_off14.16534.26389YesNoNoNo87
14I1x48 I1x50 nop_off12.79726.35403NoNoNoNo57
151x60 I1x48 nop_off11.20930NoNoNoNo55
168x47 8x50 nop_off12.38190NoNoYesNo88
173x43 6x44 nop_off55.35020NoNoYesNo89
183x43 6x41 nop_off54.35670NoNoNoNo87
195x54 6x41 nop_off53.58710NoNoNoNo87
203x47 5x54 nop_off51.55942.14335NoNoNoNo98
213x47 5x58 nop_off49.99594.27909NoNoYesYes99
225x58 6x37 nop_off21.80782.07494YesYesNoNo97
233x50 6x37 nop_off12.12540YesNoNoNo97
247x42 Lig nop_off59.59690YesYesYesYes60
255x461 Lig nop_off54.3770YesNoYesYes60
263x37 5x461 nop_off58.23297.63092NoNoYesNo66
273x37 3x41 nop_off57.14170NoNoYesNo65
283x41 4x49 nop_off44.4872.15095YesNoYesNo56
292x45 4x49 nop_off28.83140YesNoYesNo96
302x42 4x42 nop_off10.83472.15095YesYesNoNo77
313x46 6x37 nop_off18.14330NoNoNoNo97
323x38 4x49 nop_off14.01060NoNoYesNo66
333x38 4x50 nop_off11.99922.15095NoNoYesNo69
343x25 E1x50 nop_off18.35910.326822NoNoYesYes98
353x25 E2.A191 nop_off16.77125.60158NoNoNoNo94
363x22 E2.A191 nop_off15.13030NoNoNoNo24
373x22 E2.S190 nop_off11.82413.77746NoNoNoNo23
383x40 3x41 nop_off25.83470NoNoYesNo75
393x51 5x61 nop_off29.86560NoNoNoNo88
403x55 3x56 nop_off17.43494.30949NoNoNoNo76
415x46 5x49 nop_off21.95030NoNoNoNo45
425x42 5x46 nop_off17.99270NoNoNoNo34
435x38 5x42 nop_off16.65720NoNoNoNo33
445x35 5x38 nop_off13.9210YesNoNoNo43
453x56 I2x50 nop_off14.82082.15855NoNoNoNo67
46I2x50 I3.S249 nop_off13.50160NoNoNoNo74
476x40 7x49 nop_off12.92750NoNoNoNo89
486x40 7x52 nop_off11.33960NoNoNoNo88
496x55 Lig nop_off12.9561.93813NoNoYesYes50
506x55 6x58 nop_off11.56350NoNoNoNo54
511x39 2x64 Shared14.385220.7114YesYesNoYes74
521x36 2x64 Shared10.354210.8231YesYesNoYes44
531x50 2x50 Shared14.299722.4291NoNoNoYes99
542x50 7x49 Shared49.413714.6766NoYesNoNo99
552x45 4x46 Shared20.696330.7745YesNoNoNo97
562x42 4x46 Shared20.093640.2751YesYesNoNo77
572x42 3x46 Shared18.188154.6857YesYesNoNo79
582x45 4x50 Shared1520.8938YesNoYesNo99
592x63 Lig Shared46.148216.3183NoNoYesYes40
602x63 E1x50 Shared44.914514.7602NoNoYesYes48
61E1x50 E1x52 Shared23.253324.2228YesYesYesYes86
62E1x51 E1x52 Shared15.130320.453NoNoYesYes36
63E1x49 E1x51 Shared10.109910.2379YesNoNoNo43
643x34 4x50 Shared21.286616.8351YesYesYesNo59
653x36 6x48 Shared43.534297.3854NoNoYesYes78
663x36 Lig Shared43.5423100NoNoYesYes70
673x40 5x50 Shared24.54842.0689NoNoNoNo78
685x58 5x61 Shared36.767133.8299YesYesNoNo98
693x51 3x55 Shared20.020414.6158NoNoNoNo87
705x49 5x50 Shared23.253338.3294NoNoNoNo58
716x52 Lig Shared2046.5608YesYesYesYes70
725x47 6x52 Shared16.70238.9526NoYesYesYes87
735x47 6x49 Shared12.243510.5951NoYesYesNo86
741x35 1x39 nop_on7.9926710.5951NoYesYesYes57
751x39 7x38 nop_on034.6508YesYesNoNo75
762x57 7x42 nop_on8.5301317.5724YesNoYesYes76
771x43 2x57 nop_on2.3574917.1848NoNoYesNo67
781x43 1x47 nop_on016.5463NoNoYesNo66
791x47 2x54 nop_on6.5268712.8069YesNoNoNo65
801x46 2x54 nop_on6.3395810.7091NoNoNoNo75
811x47 2x51 nop_on1.6408817.3976YesNoNoNo67
821x50 2x51 nop_on019.0697NoNoNoNo97
837x34 7x38 nop_on029.3684NoNoNoNo45
846x54 7x34 nop_on030.7441NoNoNoNo54
856x54 6x58 nop_on032.401NoNoNoNo54
866x58 Lig nop_on032.8418NoNoYesYes40
876x48 7x45 nop_on3.3061990.9554YesYesNoYes89
887x45 7x48 nop_on074.105NoYesNoNo96
897x48 7x51 nop_on070.8368NoNoNoNo66
907x51 7x55 nop_on1.6408869.1799NoNoNoNo66
911x53 7x55 nop_on027.4607NoYesNoNo96
921x53 1x57 nop_on021.8743NoYesNoYes97
937x55 8x50 nop_on040.4956NoNoYesNo68
941x57 8x50 nop_on1.5960922.0415NoYesYesNo78
951x57 2x44 nop_on023.9492NoYesNoNo75
961x58 2x44 nop_on012.138NoNoNoNo35
971x56 8x50 nop_on018.5301NoNoYesNo78
981x57 2x43 nop_on016.1359NoYesNoNo78
991x56 I1x48 nop_on010.5571NoNoNoNo75
1002x46 2x50 nop_on012.7613NoNoNoYes99
1012x46 3x43 nop_on057.4675NoNoNoNo98
1023x43 7x53 nop_on056.0614NoNoNoYes89
1033x46 7x53 nop_on056.3578NoNoNoYes99
1042x39 2x43 nop_on012.1304NoNoNoNo88
1057x45 7x49 nop_on061.6554NoYesNoNo99
1063x34 3x35 nop_on010.6331YesYesNoNo58
1073x32 7x42 nop_on0.64739412.5485NoNoYesYes66
1082x56 3x32 nop_on013.8633NoNoNoNo66
1092x56 2x60 nop_on5.6392515.4899NoNoNoNo65
1103x28 Lig nop_on015.049NoNoYesYes50
1112x59 3x28 nop_on013.3845NoNoNoNo65
112E2x50 Lig nop_on022.6343NoYesYesYes90
113E1x50 E2x50 nop_on1.6653115.9611YesYesNoYes89
1142x59 E1x52 nop_on1.6978811.5604NoNoYesYes66
1153x29 Lig nop_on4.5969127.0502NoYesYesYes40
1163x29 E2x52 nop_on3.1596119.3357NoYesNoYes44
1173x33 Lig nop_on3.1229620.7646NoNoYesYes40
1183x33 E2x52 nop_on017.5268NoNoNoYes44
1195x461 6x52 nop_on5.3949510.1467YesNoYesYes67
1203x36 3x40 nop_on043.9158NoNoNoNo77
1215x47 5x51 nop_on3.1066838.7322NoYesNoYes86
1225x51 5x55 nop_on1.5553742.1525NoYesNoNo64
1235x55 6x41 nop_on040.868NoNoNoNo47
1245x58 6x41 nop_on039.6291YesYesNoNo97
1253x50 5x58 nop_on015.011YesNoYesYes99
1263x50 7x53 nop_on014.8134YesNoNoYes99
1275x49 5x53 nop_on036.4369NoNoNoNo57
1285x53 5x57 nop_on026.7462NoNoNoNo77
1293x51 5x57 nop_on024.7625NoNoNoNo87
1303x54 5x61 nop_on6.3395831.9146NoNoNoNo88
1313x54 5x65 nop_on5.1180830.1893NoNoNoNo88
1325x43 Lig nop_on019.6017NoNoYesYes40
1335x39 5x43 nop_on017.998NoNoNoNo64
1344x63 E2x52 nop_on1.710133.7691NoNoNoYes54
1354x63 5x39 nop_on016.2651NoNoNoNo56
1364x63 E2.P205 nop_on045.1395NoNoNoNo54
137E2.I204 E2.P205 nop_on7.0765520.3922NoNoNoNo54
1385x35 E2.P205 nop_on8.448720.3922YesNoNoNo44
1395x31 5x35 nop_on2.8542310.2227NoNoYesNo44
1405x36 E2.I204 nop_on4.267110.2227NoNoNoNo35
1415x65 I3.L248 nop_on014.7298NoNoNoNo83
1426x30 I3.L248 nop_on012.6701NoNoNoNo63
1435x65 6x33 nop_on014.2586NoNoNoNo87
1446x29 6x33 nop_on2.3778512.442NoNoNoNo57
1456x29 6x32 nop_on010.3671NoNoNoNo58
1462x60 Lig nop_on3.0578216.8883NoNoYesYes50
1476x44 7x45 nop_on1.5838817.2912YesNoNoYes99
1485x51 6x44 nop_on021.9731NoYesYesNo69
1492x46 7x49 nop_on046.0439NoNoNoNo99

Here, those paths that begin and end at given residue pair(s) or that pass through a residue are used to generate a novel metapath. Such a path filtering is particularly recommended if some information on allosteric residues is available. The selection syntax for a residue pair ("Pairs") is C:C:c534,A:A:?600 (the lower-case "c" stands for cytosine and "?" indicates any non standard amino acid or nucleotide residue). Selection of more than one apical residue pair has the following syntax: C:C:c534,A:A:?600,C:C:c534,A:A:E41. Only one residue can be selected as a tail ("Tail"). For midway residue(s), each residue must be separated by a comma as well e.g. A:A:?600,A:A:E41.

Midway



Download PSN data

2D representation of the global metapath, ligand(s) interactions and
histograms of path distribution according to several parameters
(click on the image to enlarge it 🔍):

A 2D representation of the global communication in the network.

Number of shortest communication paths as a function of the average residue correlation.

Number of shortest communication paths as a function of the average interaction strength of their links.

Number of shortest communication paths as a function of the % of hub nodes in each path.

Number of shortest communication paths as a function of the number of nodes in each path.

Number of shortest communication paths as a function of the % of correlated nodes in each path.


2D representation of the interactions of this orthosteric/allosteric ligand.


Node1Node2OwnerNet1LinkStrengthNet2LinkStrengthComm1Comm2Node1ShellNode2Shell
1x392x57nop_off4.301022
1x397x42nop_off4.9601021
2x562x60Shared4.723334.250021
2x563x28nop_off6.8733300021
2x577x42Shared8.596678.211021
2x607x42nop_off10.896701111
2x60LigShared12.73679.371110
2x63E1x50Shared8.186678.930112
2x63LigShared7.403335.960110
3x25E1x50Shared4.786675.222122
E1x50E2x50Shared6.5314.372121
3x25E2x50Shared7.287.282121
3x29LigShared8.553335.020110
3x327x42Shared5.366676.91011
3x32Lignop_off22.6601010
3x334x60Shared10.09332.520112
3x33LigShared13.71678.250110
3x366x48Shared13.57336.980112
3x36LigShared11.13679.950110
3x375x461Shared8.811.320021
E2.Q192E2.S190nop_off8.1800112
E2.E203E2.Q192nop_off5.0966700021
5x446x52Shared5.073337.030021
5x4616x52Shared4.8133310.111011
5x461Lignop_off3.6733301010
5x476x52Shared20.35.860021
6x486x51nop_off7.3601121
6x487x41nop_off10.7901122
6x487x42nop_off3.5366701121
6x52LigShared10.874.681110
6x556x58nop_off3.3466700011
6x55LigShared6.156679.710010
6x58E3.Q291nop_off4.6933300111
E3.P292E3.Q291nop_off7.3733300111
7x387x42Shared4.162.50021
7x42Lignop_off4.7666701010
E2.E194E2.E199nop_off5.9200111
6x587x34nop_off3.1033300112
5x435x461nop_off3.100111
3x29E2x52Shared3.073.070112
E2.E194E2.Q192Shared2.973335.10111
E2.E199E2x51Shared2.653332.650111
7x317x35nop_off2.6200012
7x31NT.L46nop_off2.4833300012
7x30E3.P292Shared1.871.870021
4x64E2.S190nop_off1.8600022
2x662x67nop_off0.5702321
1x397x38nop_on02.51022
2x537x42nop_on02.520021
2x563x32nop_on011.560021
2x593x28nop_on02.622021
3x28Lignop_on02.620110
3x29E2x50nop_on03.270111
3x33E2x52nop_on02.520112
4x60E2x52nop_on03.210122
4x605x39nop_on03.930122
E2.E203E2.S190nop_on08.620022
E2.Q192Lignop_on02.710110
E2.E194Lignop_on010.80110
E2.E199Lignop_on026.10110
E2x50Lignop_on05.592110
E2x51Lignop_on03.120110
5x395x43nop_on06.285021
5x43Lignop_on02.510110
6x51Lignop_on02.620110
6x546x58nop_on07.030021
6x547x34nop_on010.960022
6x58E3.P292nop_on09.470111
6x58Lignop_on07.190110
E3.Q291Lignop_on08.550010
E3.P292Lignop_on03.650110
E3.S293Lignop_on06.010010
7x347x38nop_on02.950022
6x517x41nop_on01.840112
3x294x64nop_on01.760112
7x31Lignop_on01.70010
3x363x40nop_on01.510112
2x67Lignop_on01.50010
E2.D195E2.E194nop_on01.30021

Location and physicochemical properties of the interaction partners of this ligand

Interactions of this ligand

Difference Members
Id Description
nop_off 4EA3-NOP-PubChem 10296561
5DHG-NOP-PubChem 25001412
5DHH-NOP-SB-612111
nop_on 8F7X-NOP-Nociceptin-Gi1/&β;1/&γ;2
Network Difference
Value nop_off nop_on
Imin 3.32 2.48
Number of Linked Nodes 271 251
Number of Specific Nodes 24 (8.86%) 4  (1.59%)
Number of Shared Nodes 247 (91.14%) 247  (98.41%)
Number of Links 291 266
Number of Specific Links 149 (51.20%) 124  (46.62%)
Number of Shared Links 142 (48.80%) 142  (53.38%)
Number of Hubs 27 23
Number of Specific Hubs 16 (59.26%) 12  (52.17%)
Number of Shared Hubs 11 (40.74%) 11  (47.83%)
Average % Shared Neighbours (Jaccard) 37.92
Average % Shared Neighbours (Otsuka) 46.98
Average % Shared Neighbours (Overlap Coefficient) 56.88
Average % Shared Cliques (k3-6) 78.41
Graphlets Similarity 0.461032
Paths Difference
Value nop_off nop_on
Number Of Nodes in MetaPath 71 91
Specific Nodes in MetaPath 28 (39.44%) 48  (52.75%)
Shared Nodes in MetaPath 247 (91.14%) 247  (91.14%)
Number Of Links MetaPath 73 99
Specific Links in MetaPath 50 (68.49%) 76  (76.77%)
Shared Links in MetaPath 142 (48.80%) 142  (48.80%)
Number of Shortest Paths 50648 37861
Length Of Smallest Path 3 3
Average Path Length 14.8904 12.622
Length of Longest Path 34 27
Minimum Path Strength 0.5 1.4
Average Path Strength 6.24728 5.0537
Maximum Path Strength 17.9433 18.21
Minimum Path Correlation 0.7 0.7
Average Path Correlation 0.920861 0.922721
Maximum Path Correlation 0.99 0.99
Minimum % Of Corr. Nodes 3.7037 4.54545
Average % Of Corr. Nodes 48.1112 47.9901
Maximum % Of Corr. Nodes 100 100
Minimum Path Hubs % 0 0
Average Path Hubs % 35.1974 31.532
Maximum Path Hubs % 100 100

Details about the values in these tables can be found in the corresponding documentation page .

You can download a compressed (zip) file with structure(s), 3D outputs (as PyMol and VMD scripts) and numerical data files (as csv and plain text files).

Download nop_off_on.zip<



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