Orange: nodes, hubs and links specific of npy_off network

Green: nodes, hubs and links shared by both networks

Purple: nodes, hubs and links specific of npy_on network

Index: hub id, click on each number to highlight the corresponding hub in the 3D visualization.

Hub: the hub being considered.

Owner: the name of the network the hub belong to or "Shared" if the corresponding hub is present in both networks.

Avg Int. Strength: the average interaction strength of all the links of the corresponding hub in the corresponding network.

Num Of Links: the number of links of the corresponding hub in the corresponding network.

ConSurf: this column reports the ConSurf conservation grades of each hub.


Index Hub Owner npy_off Avg Int. Strength npy_on Avg Int. Strength npy_off Num Of Links npy_on Num Of Links ConSurf
13x41 npy_off250427
23x50 npy_off00439
36x52 npy_off5033.3333438
46x58 npy_off250434
57x30 npy_off5033.3333533
67x47 npy_off00428
7NT Shared5033.3333445
81x39 Shared7566.6667557
92x40 Shared033.3333448
102x46 Shared0100459
11E1x50 Shared100100468
12E1x52 Shared066.6667467
133x32 Shared066.6667446
14I2 Shared7566.6667766
154x65 Shared500545
16E2 Shared10010011163
175x36 Shared033.3333444
185x47 Shared5033.3333448
196x44 Shared5033.3333459
206x48 Shared100100558
216x54 Shared100100655
22E3 Shared5066.6667463
237x38 Shared7566.6667546
247x53 Shared10066.6667489
258x50 Shared75100678
26Lig Shared10010013270
271x50 npy_on066.6667349
281x53 npy_on00249
29I1x51 npy_on00146
302x42 npy_on5033.3333247
312x50 npy_on0100359
322x53 npy_on033.3333247
332x57 npy_on066.6667367
343x43 npy_on066.6667348
353x49 npy_on2533.3333348
363x51 npy_on5033.3333347
374x46 npy_on033.3333147
384x50 npy_on066.6667349
394x61 npy_on5033.3333345
40E2x52 npy_on00144
415x39 npy_on1000346
425x461 npy_on066.6667246
435x58 npy_on0100379
445x64 npy_on00345
456x26 npy_on033.3333264
466x30 npy_on5033.3333267
476x59 npy_on066.6667244
487x42 npy_on033.3333247
497x49 npy_on033.3333249
507x52 npy_on00258
   
Orange: nodes, hubs and links specific of npy_off network

Green: nodes, hubs and links shared by both networks

Purple: nodes, hubs and links specific of npy_on network

Index: link id, click on each number to highlight the corresponding link in the 3D visualization.

Node1 Node2: the two nodes of the corresponding link.

Owner: the name of the network the link belong to or "Shared" if the corresponding link is present in both networks.

Recurrence: the relative Recurrence in the filtered pool of shortest paths.

Hub1?, Hub2?: "Yes" if the corresponding node has more than 3 links, otherwise "No".

ConSurf1, ConSurf2: these columns report the ConSurf conservation grades of the two nodes involved in a link.


Index Node1 Node2 Owner npy_off Recurrence npy_on Recurrence npy_off Hub1? npy_on Hub1? npy_off Hub2? npy_on Hub2? ConSurf1 ConSurf2
11x39 2x61 npy_off13.15532.4269YesYesNoNo76
24x65 Lig npy_off27.2550YesYesYesYes50
34x65 E2x50 npy_off23.30990YesYesNoNo59
43x25 E2x50 npy_off14.02950NoNoNoNo99
53x25 E2 npy_off13.54112.7076NoNoYesYes93
61x43 2x57 npy_off13.38836.23977NoNoNoYes77
76x52 Lig npy_off52.21550YesNoYesYes80
82x50 3x39 npy_off49.04697.18713NoYesNoNo99
93x39 6x44 npy_off50.8980NoNoYesYes99
101x50 2x47 npy_off37.62498.84211NoYesNoNo99
111x53 2x47 npy_off32.65298.35673NoYesNoNo99
122x40 7x53 npy_off22.31550YesYesYesYes89
131x53 7x53 npy_off31.63590NoYesYesYes99
142x38 3x49 npy_off10.79835.19883NoNoNoYes68
153x49 I2 npy_off12.93490NoYesYesYes86
163x56 I2 npy_off25.77210NoNoYesYes66
173x55 3x56 npy_off27.81860.163743NoNoNoNo66
183x51 5x61 npy_off37.28930NoYesNoNo78
195x61 6x34 npy_off38.21860NoNoNoNo86
203x50 6x34 npy_off43.71670YesNoNoNo96
213x50 6x37 npy_off45.9510YesNoNoNo98
225x58 6x37 npy_off50.36192.46199NoYesNoNo98
233x47 5x58 npy_off53.7861.46199NoNoNoYes99
243x47 5x54 npy_off54.62521.06433NoNoNoNo98
255x54 6x41 npy_off58.58530NoNoNoNo88
263x43 6x41 npy_off60.19840NoYesNoNo88
272x45 3x42 npy_off14.85366NoNoNoNo98
282x46 3x42 npy_off16.47926.90058YesYesNoNo98
292x46 3x39 npy_off20.62720YesYesNoNo99
302x45 4x50 npy_off11.58734.76023NoNoNoYes99
313x40 5x50 npy_off11.12899.84795NoNoNoNo79
323x40 6x44 npy_off12.11086.69591NoNoYesYes79
336x54 7x30 npy_off11.4327.62573YesYesYesNo53
347x30 E3 npy_off14.66570.128655YesNoYesYes33
356x58 7x30 npy_off11.13640YesNoYesNo43
366x54 Lig npy_off16.22870YesYesYesYes50
376x58 Lig npy_off13.07529.36842YesNoYesYes40
381x39 7x38 Shared25.882315.4971YesYesYesYes76
397x38 Lig Shared34.616627.538YesYesYesYes60
403x36 6x48 Shared47.421394.9532NoNoYesYes78
413x36 Lig Shared47.28689.807NoNoYesYes70
426x48 6x52 Shared54.650214.7427YesYesYesNo88
431x50 2x50 Shared42.471846.807NoYesNoYes99
446x44 6x48 Shared10083.5322YesYesYesYes98
452x40 8x50 Shared17.012728.0234YesYesYesYes88
463x51 3x55 Shared34.456310.2398NoYesNoNo76
473x43 6x44 Shared61.28898.7135NoYesYesYes89
482x46 3x43 Shared21.268414.0526YesYesNoYes98
49Lig NT npy_on027.6901YesYesYesYes05
502x64 Lig npy_on010.6257NoNoYesYes40
511x35 7x35 npy_on012.7661NoNoNoNo74
521x39 2x57 npy_on7.9828722.8538YesYesNoYes77
537x38 7x42 npy_on8.776911.7076YesYesNoYes67
542x57 7x42 npy_on7.7023316.2982NoYesNoYes77
552x46 2x50 npy_on031.7661YesYesNoYes99
561x50 2x51 npy_on028.5673NoYesNoNo98
573x43 7x49 npy_on011.7485NoYesNoYes89
582x50 7x49 npy_on030.2632NoYesNoYes99
592x54 2x57 npy_on040.8947NoNoNoYes77
602x54 7x46 npy_on5.7460641.2982NoNoNoNo78
612x50 7x46 npy_on6.8807542.1871NoYesNoNo98
621x50 7x50 npy_on4.6063716.3918NoYesNoNo99
631x49 7x50 npy_on3.4616612.3099NoNoNoNo89
643x43 7x53 npy_on073.2105NoYesYesYes89
652x43 7x53 npy_on1.1497160.4795NoNoYesYes89
661x53 2x43 npy_on012.4152NoYesNoNo98
672x43 8x50 npy_on054.4912NoNoYesYes88
681x57 8x50 npy_on010.6608NoNoYesYes78
691x56 8x50 npy_on2.2969237.1988NoNoYesYes78
701x56 8x53 npy_on1.1547214.614NoNoNoNo75
711x56 8x54 npy_on021.2866NoNoNoNo75
722x37 2x40 npy_on2.3119514.2398NoNoYesYes88
732x37 I1x51 npy_on012.2398NoNoNoYes86
744x61 Lig npy_on8.0980933.0936NoYesYesYes50
753x33 4x61 npy_on2.33743.5789NoNoNoYes45
763x33 4x57 npy_on1.1697543.386NoNoNoNo47
773x34 4x57 npy_on043.9649NoNoNoNo57
783x34 4x50 npy_on6.650345.1053NoNoNoYes59
794x46 4x50 npy_on040.7368NoYesNoYes79
802x42 4x46 npy_on042.2047NoYesNoYes77
812x42 3x49 npy_on0100NoYesNoYes78
823x46 7x53 npy_on066.8596NoNoYesYes89
832x42 3x46 npy_on3.3163869.7719NoYesNoNo78
842x39 3x49 npy_on018.5614NoNoNoYes78
852x39 2x40 npy_on017.848NoNoYesYes78
865x461 Lig npy_on013.1404NoYesYesYes60
873x37 5x461 npy_on3.0934610.6667NoNoNoYes66
882x51 2x55 npy_on1.1572316.3918NoNoNoNo85
892x55 2x551 npy_on012.3099NoNoNoNo55
902x63 Lig npy_on012.8246NoNoYesYes60
912x63 E1x50 npy_on1.1647410.9357NoNoYesYes68
92E1x50 E1x52 npy_on6.6077221.6667YesYesYesYes87
93E2 Lig npy_on038.6901YesYesYesYes30
94E1x50 E2 npy_on014.883YesYesYesYes83
954x61 4x65 npy_on010.2632NoYesYesYes55
963x49 3x53 npy_on1.1171598.7485NoYesNoNo88
973x53 I2 npy_on096.5614NoNoYesYes86
985x64 I2 npy_on073.6257NoYesYesYes56
993x55 5x64 npy_on6.4524212.8713NoNoNoYes65
1003x52 I2 npy_on0.060115714.4795NoNoYesYes46
1013x52 3x56 npy_on1.0545312.0175NoNoNoNo46
1025x47 5x48 npy_on3.6545418.386YesYesNoNo85
1035x45 5x48 npy_on5.7886416.5789NoNoNoNo55
1045x42 5x45 npy_on014.7602NoNoNoNo45
1055x38 5x42 npy_on1.452812.9298NoNoNoNo44
1065x35 5x38 npy_on011.0877NoNoNoNo34
1076x54 7x37 npy_on3.4090610.0058YesYesNoNo56
1085x51 6x44 npy_on019.8889NoNoYesYes69
1095x64 5x68 npy_on4.258256.0117NoYesNoNo56
1105x68 6x26 npy_on053.6374NoNoNoYes64
1116x26 6x30 npy_on032.1813NoYesNoYes47
1127x55 8x54 npy_on017.2807NoNoNoNo65
1137x55 8x51 npy_on012.9649NoNoNoNo68
1148x48 8x51 npy_on1.1171510.7895NoNoNoNo58
1157x52 7x53 npy_on013.7836NoYesYesYes89
1166x48 7x45 npy_on7.1512715.269YesYesNoNo89
1176x47 7x45 npy_on6.1443313.5497NoNoNoNo89
1186x47 7x43 npy_on5.1323812.3918NoNoNoNo86
1192x46 7x53 npy_on022.6901YesYesYesYes99
1207x49 7x53 npy_on019.7953NoYesYesYes99
1212x42 3x45 npy_on2.231814.1579NoYesNoNo77
1225x47 5x51 npy_on1.4853616.7076YesYesNoNo86

Here, those paths that begin and end at given residue pair(s) or that pass through a residue are used to generate a novel metapath. Such a path filtering is particularly recommended if some information on allosteric residues is available. The selection syntax for a residue pair ("Pairs") is C:C:c534,A:A:?600 (the lower-case "c" stands for cytosine and "?" indicates any non standard amino acid or nucleotide residue). Selection of more than one apical residue pair has the following syntax: C:C:c534,A:A:?600,C:C:c534,A:A:E41. Only one residue can be selected as a tail ("Tail"). For midway residue(s), each residue must be separated by a comma as well e.g. A:A:?600,A:A:E41.

Midway



Download PSN data

2D representation of the global metapath, ligand(s) interactions and
histograms of path distribution according to several parameters
(click on the image to enlarge it 🔍):

A 2D representation of the global communication in the network.

Number of shortest communication paths as a function of the average residue correlation.

Number of shortest communication paths as a function of the average interaction strength of their links.

Number of shortest communication paths as a function of the % of hub nodes in each path.

Number of shortest communication paths as a function of the number of nodes in each path.

Number of shortest communication paths as a function of the % of correlated nodes in each path.


2D representation of the interactions of this orthosteric/allosteric ligand.


Node1Node2OwnerNet1LinkStrengthNet2LinkStrengthComm1Comm2Node1ShellNode2Shell
NTNTnpy_off10.5501111
7x28NTnpy_off6.33500021
1x397x38Shared8.43755.080021
2x563x32Shared6.48756.616670121
2x603x28npy_off4.4501112
2x607x38Shared6.502513.691111
2x63E1x50Shared11.092510.290112
2x647x35Shared4.793.963330112
2x67E2npy_off5.7200011
E1x49E2Shared12.95759.770121
3x25E1x50Shared5.54756.963331122
E1x50E2x50Shared5.553.916671122
3x22E2Shared12.44258.926671121
3x25E2Shared5.2552.726671121
3x25E2x50Shared7.286.066671122
3x294x65Shared13.9854.896670021
3x327x38npy_off4.942501111
3x32LigShared8.46258.061110
3x366x48Shared8.353.623330112
3x36LigShared8.4652.520110
3x375x461Shared11.21755.553330021
4x605x39Shared18.42756.026670021
4x615x39Shared7.2456.813330111
4x61LigShared7.50752.940110
4x64E2Shared30.19513.30331121
4x65E2x50npy_off4.377500112
4x65E2x52Shared5.1955.683330111
E2E2Shared80.3184.061111
E2E2x51Shared14.584.626671111
5x36E2Shared10.618.306671111
5x35E2npy_off16.227501021
5x335x36npy_off4.1701021
5x33E3npy_off5.357501021
5x36E3npy_off6.487501111
5x395x43npy_off9.38500111
5x406x59Shared9.82257.256671111
5x40LigShared5.96256.933331110
5x446x52Shared3.951.716670021
5x476x52Shared8.6456.853330021
6x486x52Shared5.8953.576670121
6x516x55Shared7.42754.103330021
6x517x34npy_off4.87500021
6x52Lignpy_off10.602500010
6x546x58Shared12.06252.426671011
6x547x33Shared6.493.326671012
6x547x34Shared8.57256.786671011
6x547x37Shared4.26255.186671012
6x54Lignpy_off4.687501010
6x55LigShared18.18514.260110
6x587x30npy_off5.437501111
6x58LigShared3.992518.77331110
6x59LigShared6.897.151110
6x61E3Shared6.87759.833330021
7x30E3Shared4.8454.043331111
7x277x30npy_off9.0900111
7x34LigShared10.632511.391110
7x387x42Shared12.80258.756671112
7x38LigShared4.925.073331110
E2NTnpy_off17.35501111
6x547x30Shared4.92252.816671011
2x60LigShared4.9859.603331110
4x65Lignpy_off4.1100110
3x334x61Shared3.652.433330021
2x533x32npy_off3.582500121
3x415x461npy_off3.28500021
2x647x31npy_off2.19500111
7x277x29npy_off2.192500112
3x264x65npy_off2.03500021
7x267x30npy_off1.72500021
5x365x37npy_off1.212501112
6x576x58npy_off0.65500021
1x32NTnpy_on03.326670021
1x397x35npy_on05.573330022
2x532x56npy_on02.816670122
2x533x36npy_on02.543330121
2x567x42npy_on02.70122
2x603x32npy_on02.833331111
2x63Lignpy_on019.03330110
2x67Lignpy_on08.30010
E1x50E2npy_on03.253331121
3x223x26npy_on03.61122
3x283x32npy_on02.753330021
E2E2x50npy_on04.533331112
E2Lignpy_on042.46671110
E2x51Lignpy_on07.286670110
E2E2x52npy_on06.976671111
5x39E2npy_on03.236670111
5x366x59npy_on06.353331111
5x36Lignpy_on05.183331110
5x435x461npy_on08.156670111
5x43Lignpy_on05.106670110
5x461Lignpy_on04.143330110
6x586x59npy_on02.616671111
7x30Lignpy_on07.681110
7x31Lignpy_on011.01330010
LigNTnpy_on03.186671101
E3Lignpy_on010.411110
E2x52Lignpy_on05.040110
2x64Lignpy_on02.523330110
5x39Lignpy_on03.416670110
7x29NTnpy_on03.353330021
2x537x42npy_on02.913330122
2x63E2npy_on03.436670111
3x28E1x50npy_on02.456670022
4x614x65npy_on02.643330111
4x65E2npy_on02.883330111
5x36E2x52npy_on03.491111
E3E3npy_on03.593331111
7x27Lignpy_on02.210110
7x287x29npy_on01.840022
5x465x461npy_on01.836670021
1x31NTnpy_on01.413330021
5x33E2npy_on01.033331021
7x267x27npy_on00.9033330021
6x57E3npy_on00.5133330021

Location and physicochemical properties of the interaction partners of this ligand

Interactions of this ligand

Difference Members
Id Description
npy_off npy1_off
npy2_off
npy_on npy1_on
npy2_on
npy4_on
Network Difference
Value npy_off npy_on
Imin 3.805 2.28667
Number of Linked Nodes 260 271
Number of Specific Nodes 0 (0.00%) 11  (4.06%)
Number of Shared Nodes 260 (100.00%) 260  (95.94%)
Number of Links 280 337
Number of Specific Links 111 (39.64%) 168  (49.85%)
Number of Shared Links 169 (60.36%) 169  (50.15%)
Number of Hubs 26 44
Number of Specific Hubs 6 (23.08%) 24  (54.55%)
Number of Shared Hubs 20 (76.92%) 20  (45.45%)
Average % Shared Neighbours (Jaccard) 43.28
Average % Shared Neighbours (Otsuka) 53.29
Average % Shared Neighbours (Overlap Coefficient) 63.16
Average % Shared Cliques (k3-6) 51.67
Graphlets Similarity 0.520421
Paths Difference
Value npy_off npy_on
Number Of Nodes in MetaPath 47 80
Specific Nodes in MetaPath 22 (46.81%) 55  (68.75%)
Shared Nodes in MetaPath 260 (100.00%) 260  (100.00%)
Number Of Links MetaPath 48 85
Specific Links in MetaPath 37 (77.08%) 74  (87.06%)
Shared Links in MetaPath 169 (60.36%) 169  (60.36%)
Number of Shortest Paths 62980 60960
Length Of Smallest Path 3 3
Average Path Length 14.7901 11.4216
Length of Longest Path 35 27
Minimum Path Strength 0.745 0.456667
Average Path Strength 5.85599 4.56366
Maximum Path Strength 23.775 28.3633
Minimum Path Correlation 0.7 0.703333
Average Path Correlation 0.924132 0.932492
Maximum Path Correlation 0.99 0.99
Minimum % Of Corr. Nodes 3.57143 4.7619
Average % Of Corr. Nodes 48.4826 57.8436
Maximum % Of Corr. Nodes 100 100
Minimum Path Hubs % 0 0
Average Path Hubs % 36.3871 49.445
Maximum Path Hubs % 100 100

Details about the values in these tables can be found in the corresponding documentation page .

You can download a compressed (zip) file with structure(s), 3D outputs (as PyMol and VMD scripts) and numerical data files (as csv and plain text files).

Download npy_off_on.zip<



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