Orange: nodes, hubs and links specific of nts1_off_allo network

Green: nodes, hubs and links shared by both networks

Purple: nodes, hubs and links specific of nts1_off network

Index: hub id, click on each number to highlight the corresponding hub in the 3D visualization.

Hub: the hub being considered.

Owner: the name of the network the hub belong to or "Shared" if the corresponding hub is present in both networks.

Avg Int. Strength: the average interaction strength of all the links of the corresponding hub in the corresponding network.

Num Of Links: the number of links of the corresponding hub in the corresponding network.

ConSurf: this column reports the ConSurf conservation grades of each hub.


Index Hub Owner nts1_off_allo Avg Int. Strength nts1_off Avg Int. Strength nts1_off_allo Num Of Links nts1_off Num Of Links ConSurf
11x50 nts1_off_allo6.86258.58167439
21x52 nts1_off_allo5.72251.595426
31x56 nts1_off_allo4.3181.1175527
42x41 nts1_off_allo6.128.745415
52x49 nts1_off_allo4.2624.47528
62x63 nts1_off_allo8.8659.48833435
72x66 nts1_off_allo8.572514.8925425
83x30 nts1_off_allo4.15755.27167436
93x50 nts1_off_allo6.9223.28667539
103x52 nts1_off_allo3.91752.1775424
113x55 nts1_off_allo4.36.915427
123x56 nts1_off_allo3.86254.3875426
134x49 nts1_off_allo3.455.315437
144x64 nts1_off_allo4.5653.8475425
155x58 nts1_off_allo6.607511.2175429
166x57 nts1_off_allo5.417.7025424
176x59 nts1_off_allo5.357.88167433
187x50 nts1_off_allo4.3357.1225429
198x50 nts1_off_allo7.420508
208x54 nts1_off_allo9.610507
218x57 nts1_off_allo3.91250405
221x39 Shared5.197144.79571777
232x57 Shared7.7456.00875448
242x60 Shared5.9047.25583566
252x62 Shared5.82756.51625445
26E1x50 Shared9.29257.9475468
27E1x52 Shared6.6667.194557
283x28 Shared10.2710.0013446
293x37 Shared8.57258.509457
303x49 Shared7.967510.8538448
313x51 Shared6.6867.31875548
324x50 Shared4.0157.0025449
33E2 Shared20.09119.89167993
345x461 Shared4.66255.09625446
355x47 Shared9.03758.41125448
366x48 Shared7.69255.96938488
376x54 Shared8.3410.515655
386x55 Shared7.0256.284456
397x30 Shared8.19756.334454
407x41 Shared8.838.432457
417x42 Shared11.538.184457
427x49 Shared4.2123.49417569
437x53 Shared9.35.2725449
44Lig Shared10.8657.923578140
452x33 nts1_off02.90375040
462x36 nts1_off06.07040
472x38 nts1_off4.237.611157
482x42 nts1_off9.9158.66258
492x51 nts1_off3.5353.6825247
502x64 nts1_off7.225.55875144
513x29 nts1_off9.093338.75375344
523x32 nts1_off11.716.28687387
533x33 nts1_off4.938.6625245
543x39 nts1_off6.7754.12625249
553x54 nts1_off4.573334.56125349
564x59 nts1_off3.043332.055345
57E2x52 nts1_off7.694.3875245
585x43 nts1_off7.593338.59625346
596x26 nts1_off4.594.93125244
606x32 nts1_off4.825.73625148
616x37 nts1_off45.066358
626x44 nts1_off6.363334.86917369
636x51 nts1_off6.697.88833266
646x52 nts1_off8.9566711.3263347
65E3 nts1_off8.656676.19625343
667x34 nts1_off10.383311.6563344
677x38 nts1_off5.265.791356
687x45 nts1_off6.664.18249
   
Orange: nodes, hubs and links specific of nts1_off_allo network

Green: nodes, hubs and links shared by both networks

Purple: nodes, hubs and links specific of nts1_off network

Index: link id, click on each number to highlight the corresponding link in the 3D visualization.

Node1 Node2: the two nodes of the corresponding link.

Owner: the name of the network the link belong to or "Shared" if the corresponding link is present in both networks.

Recurrence: the relative Recurrence in the filtered pool of shortest paths.

Hub1?, Hub2?: "Yes" if the corresponding node has more than 3 links, otherwise "No".

ConSurf1, ConSurf2: these columns report the ConSurf conservation grades of the two nodes involved in a link.


Index Node1 Node2 Owner nts1_off_allo Recurrence nts1_off Recurrence nts1_off_allo Hub1? nts1_off Hub1? nts1_off_allo Hub2? nts1_off Hub2? ConSurf1 ConSurf2
12x65 2x66 nts1_off_allo11.6730NoNoYesNo45
22x60 2x65 nts1_off_allo12.87060YesYesNoNo64
32x60 7x42 nts1_off_allo31.8763.5801YesYesYesYes67
42x60 3x32 nts1_off_allo36.84922.7137YesYesNoYes67
52x53 7x41 nts1_off_allo1002.36604NoNoYesYes77
62x53 7x46 nts1_off_allo49.42160NoNoNoNo79
72x50 7x46 nts1_off_allo47.73830.998841NoNoNoNo99
81x50 7x50 nts1_off_allo39.08577.96728YesNoYesNo99
97x49 7x50 nts1_off_allo37.34220YesYesYesNo99
107x53 8x50 nts1_off_allo11.81970YesYesYesNo98
112x53 3x35 nts1_off_allo52.99042.27498NoNoNoNo77
122x49 3x35 nts1_off_allo51.67260YesNoNoNo87
133x50 6x37 nts1_off_allo31.09683.26969YesNoNoYes98
142x60 7x38 nts1_off_allo61.38092.02941YesYesNoYes66
153x28 3x29 nts1_off_allo22.37698.2501YesYesNoYes64
166x54 7x38 nts1_off_allo35.64442.88064YesYesNoYes56
176x40 7x49 nts1_off_allo27.12170.829148NoNoYesYes89
183x43 6x40 nts1_off_allo26.49160NoNoNoNo88
193x43 6x41 nts1_off_allo25.86150NoNoNoNo88
205x54 6x41 nts1_off_allo25.23150NoNoNoNo88
213x47 5x54 nts1_off_allo23.34850.911925NoNoNoNo98
225x58 6x37 nts1_off_allo20.76573.63529YesNoNoYes98
235x58 5x61 nts1_off_allo32.18620YesNoNoNo99
243x51 5x61 nts1_off_allo21.24910YesYesNoNo89
253x47 5x58 nts1_off_allo22.75690NoNoYesNo99
263x54 3x55 nts1_off_allo12.70470NoYesYesNo97
275x40 6x55 nts1_off_allo10.45381.4417NoNoYesYes66
285x40 6x59 nts1_off_allo18.08190NoNoYesNo63
295x40 Lig nts1_off_allo13.7580.0772584NoNoYesYes60
307x34 7x38 nts1_off_allo24.82991.59208NoYesNoYes46
317x34 Lig nts1_off_allo23.81023.14966NoYesYesYes40
323x55 5x64 nts1_off_allo17.47110YesNoNoNo75
333x50 3x53 nts1_off_allo18.36810YesNoNoNo98
343x53 6x30 nts1_off_allo17.38210NoNoNoNo87
355x72 6x30 nts1_off_allo16.50430NoNoNoNo57
367x27 Lig nts1_off_allo11.50231.5093NoNoYesYes20
377x30 Lig nts1_off_allo13.82069.20617YesYesYesYes40
383x29 4x61 nts1_off_allo13.93129.17168NoYesNoNo45
393x32 7x41 Shared55.409714.0403NoYesYesYes77
406x48 7x41 Shared24.252726.4072YesYesYesYes87
417x41 7x42 Shared37.205111.6853YesYesYesYes77
421x50 2x50 Shared47.228419.4636YesNoNoNo99
437x49 7x53 Shared15.285128.3621YesYesYesYes99
442x49 4x50 Shared49.861737.8953YesNoYesYes89
452x45 4x50 Shared49.592437.1172NoNoYesYes99
462x45 3x42 Shared46.983136.5612NoNoNoNo98
473x42 4x49 Shared48.474137.2399NoNoYesNo87
483x45 4x49 Shared46.434836.8233NoNoYesNo77
492x42 3x45 Shared45.980336.437NoYesNoNo87
502x42 3x46 Shared45.355110.9293NoYesNoNo89
513x46 6x37 Shared44.708223.1375NoNoNoYes98
523x28 3x32 Shared31.161823.2865YesYesNoYes67
533x36 6x48 Shared10.682320.6694NoNoYesYes78
543x36 5x461 Shared10.172419.9685NoNoYesYes76
556x54 Lig Shared25.327723.4631YesYesYesYes50
566x44 6x48 Shared11.408520.519NoYesYesYes98
576x44 7x49 nts1_off020.0679NoYesYesYes99
586x48 7x45 nts1_off3.931914.3977YesYesNoYes89
597x45 7x49 nts1_off014.457NoYesYesYes99
601x43 2x57 nts1_off3.5615510.6023NoNoYesYes78
611x50 2x51 nts1_off8.0441511.3308YesNoNoYes97
622x50 6x44 nts1_off021.3068NoNoNoYes99
633x39 6x48 nts1_off0100NoYesYesYes98
642x46 3x39 nts1_off073.7666NoNoNoYes99
652x46 3x42 nts1_off6.173273.7432NoNoNoNo98
662x45 4x46 nts1_off5.7114773.0065NoNoNoNo97
672x42 4x46 nts1_off072.4408NoYesNoNo87
682x42 3x49 nts1_off060.1209NoYesYesYes88
692x38 3x49 nts1_off0.95471755.6192NoYesYesYes78
702x35 2x38 nts1_off097.6381NoNoNoYes07
712x35 6x29 nts1_off048.4493NoNoNoNo06
722x36 6x29 nts1_off022.0697NoYesNoNo06
732x49 3x39 nts1_off0.79118938.0953YesNoNoYes89
742x42 4x42 nts1_off056.9201NoYesNoNo87
752x38 4x42 nts1_off055.8799NoYesNoNo77
762x34 2x38 nts1_off012.2289NoNoNoYes07
772x33 6x29 nts1_off024.4868NoYesNoNo06
782x33 6x32 nts1_off017.1693NoYesNoYes08
792x36 6x32 nts1_off017.1983NoYesNoYes08
802x35 6x30 nts1_off047.9761NoNoNoNo07
812x43 7x53 nts1_off0.98838526.8142NoNoYesYes89
822x39 2x43 nts1_off026.0789NoNoNoNo88
832x39 3x46 nts1_off025.7243NoNoNoNo89
842x59 3x28 nts1_off9.8958718.6952NoNoYesYes66
852x59 E1x52 nts1_off9.0926617.4356NoNoYesYes67
86E2x52 Lig nts1_off012.2579NoYesYesYes50
87E2x51 E2x52 nts1_off0.78397411.0866NoNoNoYes45
883x33 4x57 nts1_off7.2265119.1573NoYesNoNo57
893x30 4x57 nts1_off5.6537514.9192YesNoNoNo67
903x30 4x62 nts1_off3.2585410.6699YesNoNoNo65
913x32 6x51 nts1_off017.1845NoYesNoYes76
923x37 5x461 nts1_off1.9094311.5612YesYesYesYes76
936x51 6x55 nts1_off0.088978738.0705NoYesYesYes66
945x43 6x55 nts1_off6.8441410.5899NoYesYesYes66
956x55 Lig nts1_off023.6107YesYesYesYes60
963x47 6x37 nts1_off014.2763NoNoNoYes98
973x47 5x57 nts1_off012.5338NoNoNoNo97
983x54 6x30 nts1_off024.6537NoYesNoNo97
993x54 5x68 nts1_off014.8322NoYesNoNo96
1006x26 6x30 nts1_off021.6517NoYesNoNo47
1016x26 I2x50 nts1_off012.3462NoYesNoNo48
1025x44 6x56 nts1_off1.4501112.7794NoNoNoNo66
1036x56 6x60 nts1_off010.6561NoNoNoNo65
1045x47 6x48 nts1_off011.8964YesYesYesYes88
1055x64 5x68 nts1_off012.3669NoNoNoNo56
1066x28 6x32 nts1_off014.7343NoNoNoYes58
1076x32 6x35 nts1_off014.7343NoYesNoNo87
1087x31 Lig nts1_off016.1636NoNoYesYes40
1097x31 7x35 nts1_off2.3567311.4839NoNoNoNo43
1103x33 5x43 nts1_off017.0093NoYesNoYes56
1116x51 6x54 nts1_off1.0677425.6263NoYesYesYes65
1122x57 7x42 nts1_off4.2661710.4934YesYesYesYes87
1136x48 6x51 nts1_off078.4021YesYesNoYes86
1143x39 6x44 nts1_off011.7088NoYesNoYes99

Here, those paths that begin and end at given residue pair(s) or that pass through a residue are used to generate a novel metapath. Such a path filtering is particularly recommended if some information on allosteric residues is available. The selection syntax for a residue pair ("Pairs") is C:C:c534,A:A:?600 (the lower-case "c" stands for cytosine and "?" indicates any non standard amino acid or nucleotide residue). Selection of more than one apical residue pair has the following syntax: C:C:c534,A:A:?600,C:C:c534,A:A:E41. Only one residue can be selected as a tail ("Tail"). For midway residue(s), each residue must be separated by a comma as well e.g. A:A:?600,A:A:E41.

Midway



Download PSN data

2D representation of the global metapath, ligand(s) interactions and
histograms of path distribution according to several parameters
(click on the image to enlarge it 🔍):

A 2D representation of the global communication in the network.

Number of shortest communication paths as a function of the average residue correlation.

Number of shortest communication paths as a function of the average interaction strength of their links.

Number of shortest communication paths as a function of the % of hub nodes in each path.

Number of shortest communication paths as a function of the number of nodes in each path.

Number of shortest communication paths as a function of the % of correlated nodes in each path.


2D representation of the interactions of this orthosteric/allosteric ligand.


Node1Node2OwnerNet1LinkStrengthNet2LinkStrengthComm1Comm2Node1ShellNode2Shell
2x647x34nts1_off8.2501021
2x647x38nts1_off3.62501022
3x283x29Shared13.40512.911021
3x294x61Shared2.9953.591012
3x294x65Shared12.57510.781011
3x29Lignts1_off6.0401010
4x614x64Shared4.527.530022
4x65E2x52Shared5.878.391011
4x65Lignts1_off5.00501010
E2E2Shared22.5769.891422
E2E2x51Shared13.187.421422
E2x51E2x52Shared5.256.991421
5x36E2x52nts1_off3.2801011
E2x52Lignts1_off3.1501010
5x366x58nts1_off9.74501011
5x36Lignts1_off3.5601010
5x406x55Shared5.017.521011
5x406x58nts1_off7.53501011
5x40LigShared4.1454.651010
5x436x55Shared5.4256.031121
5x446x55nts1_off3.8800021
6x516x54Shared7.7153.091121
6x516x55Shared10.80510.291121
6x537x33nts1_off4.58500022
6x547x34Shared15.9512.351111
6x547x37Shared9.22511.641112
6x547x38Shared9.046.031112
6x54LigShared10.64512.671110
6x55Lignts1_off6.301110
6x577x33Shared4.9757.460012
6x57LigShared10.438.290010
6x58LigShared20.05530.171010
6x617x30nts1_off3.02501011
6x61Lignts1_off5.08501010
7x297x30Shared4.1256.190021
7x30LigShared14.328.411110
7x317x35Shared7.886.570012
7x34LigShared17.77512.991110
E3E3nts1_off7.6601111
7x26E3nts1_off5.12501021
7x30E3Shared4.3413.51111
7x267x30Shared5.864.691021
7x347x38Shared4.655.811112
7x27LigShared2.7553.060110
7x31Lignts1_off1.66500010
7x287x31nts1_off0.6300021
2x643x28nts1_off_allo07.221022
4x644x65nts1_off_allo04.520421
4x64E2nts1_off_allo03.040422
5x36E2nts1_off_allo03.071012
5x406x59nts1_off_allo03.271012
6x546x55nts1_off_allo04.261111
6x576x61nts1_off_allo04.370011
7x27E3nts1_off_allo05.790111
E3Lignts1_off_allo06.681110
7x287x32nts1_off_allo03.450022
7x317x32nts1_off_allo03.270012
7x337x37nts1_off_allo05.190022
7x277x28nts1_off_allo02.30112
6x536x57nts1_off_allo01.520021

Location and physicochemical properties of the interaction partners of this ligand

Interactions of this ligand

Difference Members
Id Description
nts1_off_allo 7UL2-NTS1-SR48692-Na
nts1_off 6Z4Q-NTS1-SR142948A
6Z4S-NTS1-SR48692
Network Difference
Value nts1_off_allo nts1_off
Imin 2.96 2.92
Number of Linked Nodes 256 252
Number of Specific Nodes 25 (9.77%) 21  (8.33%)
Number of Shared Nodes 231 (90.23%) 231  (91.67%)
Number of Links 296 310
Number of Specific Links 133 (44.93%) 147  (47.42%)
Number of Shared Links 163 (55.07%) 163  (52.58%)
Number of Hubs 44 47
Number of Specific Hubs 21 (47.73%) 24  (51.06%)
Number of Shared Hubs 23 (52.27%) 23  (48.94%)
Average % Shared Neighbours (Jaccard) 37.75
Average % Shared Neighbours (Otsuka) 46.25
Average % Shared Neighbours (Overlap Coefficient) 55.11
Average % Shared Cliques (k3-6) 79.39
Graphlets Similarity 0.621815
Paths Difference
Value nts1_off_allo nts1_off
Number Of Nodes in MetaPath 55 69
Specific Nodes in MetaPath 27 (49.09%) 41  (59.42%)
Shared Nodes in MetaPath 231 (90.23%) 231  (90.23%)
Number Of Links MetaPath 56 76
Specific Links in MetaPath 38 (67.86%) 58  (76.32%)
Shared Links in MetaPath 163 (55.07%) 163  (55.07%)
Number of Shortest Paths 66264 138376
Length Of Smallest Path 3 3
Average Path Length 15.8683 15.6186
Length of Longest Path 32 28
Minimum Path Strength 1.295 0.6675
Average Path Strength 6.06071 6.0746
Maximum Path Strength 21.58 16.2825
Minimum Path Correlation 0.7 0.7
Average Path Correlation 0.933206 0.91155
Maximum Path Correlation 0.99 0.99
Minimum % Of Corr. Nodes 3.84615 5
Average % Of Corr. Nodes 47.5419 34.4203
Maximum % Of Corr. Nodes 100 100
Minimum Path Hubs % 0 0
Average Path Hubs % 39.9957 48.9925
Maximum Path Hubs % 100 100

Details about the values in these tables can be found in the corresponding documentation page .

You can download a compressed (zip) file with structure(s), 3D outputs (as PyMol and VMD scripts) and numerical data files (as csv and plain text files).

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