Orange: nodes, hubs and links specific of prostanoid_off network

Green: nodes, hubs and links shared by both networks

Purple: nodes, hubs and links specific of prostanoid_on network

Index: hub id, click on each number to highlight the corresponding hub in the 3D visualization.

Hub: the hub being considered.

Owner: the name of the network the hub belong to or "Shared" if the corresponding hub is present in both networks.

Avg Int. Strength: the average interaction strength of all the links of the corresponding hub in the corresponding network.

Num Of Links: the number of links of the corresponding hub in the corresponding network.

ConSurf: this column reports the ConSurf conservation grades of each hub.


Index Hub Owner prostanoid_off Avg Int. Strength prostanoid_on Avg Int. Strength prostanoid_off Num Of Links prostanoid_on Num Of Links ConSurf
11x49 prostanoid_off16.66670429
2I1 prostanoid_off33.33330616
32x39 prostanoid_off66.66670538
42x42 prostanoid_off33.33330638
52x64 prostanoid_off33.33330536
6E1x50 prostanoid_off83.33330636
73x31 prostanoid_off00425
83x33 prostanoid_off83.333333.3333437
93x35 prostanoid_off66.666725537
103x37 prostanoid_off16.66670418
113x50 prostanoid_off66.66670429
12I2x56 prostanoid_off00425
134x46 prostanoid_off00438
145x35 prostanoid_off00413
155x57 prostanoid_off00417
165x62 prostanoid_off00417
176x54 prostanoid_off66.66678.33333536
187x35 prostanoid_off33.33330436
198x47 prostanoid_off33.33330539
208x48 prostanoid_off00436
21NT prostanoid_off66.666701210
221x50 Shared33.33330449
231x57 Shared00448
242x50 Shared66.666715.2778449
253x34 Shared33.333316.6667447
26E2 Shared10010024235
276x48 Shared66.666733.3333558
28E3 Shared10066.6667952
297x45 Shared33.333316.6667549
307x46 Shared33.333333.3333559
317x53 Shared5040.2778449
32Lig Shared10010011140
331x36 prostanoid_on00246
341x42 prostanoid_on00248
352x40 prostanoid_on00258
362x51 prostanoid_on00358
372x57 prostanoid_on00148
38E1 prostanoid_on33.333350364
393x28 prostanoid_on00246
403x51 prostanoid_on00348
41I2x52 prostanoid_on00245
424x60 prostanoid_on016.6667259
43E2x51 prostanoid_on66.666750356
44E2x52 prostanoid_on33.333350267
455x67 prostanoid_on00144
465x72 prostanoid_on00040
476x29 prostanoid_on00147
486x30 prostanoid_on00158
496x32 prostanoid_on00148
506x37 prostanoid_on00148
517x39 prostanoid_on029.1667247
527x49 prostanoid_on5016.6667359
537x51 prostanoid_on00347
548x53 prostanoid_on00147
551x61 prostanoid_on00140
   
Orange: nodes, hubs and links specific of prostanoid_off network

Green: nodes, hubs and links shared by both networks

Purple: nodes, hubs and links specific of prostanoid_on network

Index: link id, click on each number to highlight the corresponding link in the 3D visualization.

Node1 Node2: the two nodes of the corresponding link.

Owner: the name of the network the link belong to or "Shared" if the corresponding link is present in both networks.

Recurrence: the relative Recurrence in the filtered pool of shortest paths.

Hub1?, Hub2?: "Yes" if the corresponding node has more than 3 links, otherwise "No".

ConSurf1, ConSurf2: these columns report the ConSurf conservation grades of the two nodes involved in a link.


Index Node1 Node2 Owner prostanoid_off Recurrence prostanoid_on Recurrence prostanoid_off Hub1? prostanoid_on Hub1? prostanoid_off Hub2? prostanoid_on Hub2? ConSurf1 ConSurf2
11x50 2x50 prostanoid_off45.36618.48503YesYesYesYes99
21x50 7x50 prostanoid_off36.01768.85613YesYesNoNo99
31x49 7x50 prostanoid_off34.94220YesNoNoNo99
41x49 7x51 prostanoid_off23.78424.5083YesNoNoYes97
57x51 7x54 prostanoid_off21.46450NoYesNoNo78
67x54 8x51 prostanoid_off19.11180NoNoNoNo87
77x56 8x51 prostanoid_off15.7790NoNoNoNo87
86x36 7x56 prostanoid_off14.57520NoNoNoNo88
96x36 7x53 prostanoid_off13.59880NoNoYesYes89
102x50 7x49 prostanoid_off44.70180YesYesNoYes99
112x46 7x49 prostanoid_off76.46912.69294NoNoNoYes99
122x46 3x42 prostanoid_off75.31661.51447NoNoNoNo98
133x42 4x46 prostanoid_off74.15670NoNoYesNo88
142x42 4x46 prostanoid_off65.83238.7809YesNoYesNo88
153x49 I2x57 prostanoid_off18.00330NoNoNoNo97
162x38 I2x57 prostanoid_off15.4230NoNoNoNo67
172x38 4x38 prostanoid_off13.92920NoNoNoNo68
184x38 I2x53 prostanoid_off12.38390NoNoNoNo88
193x49 3x50 prostanoid_off14.49440NoNoYesNo99
202x39 6x33 prostanoid_off26.37920YesNoNoNo89
212x56 Lig prostanoid_off20.05875.5915NoNoYesYes70
222x56 3x31 prostanoid_off19.16314.11213NoNoYesNo75
233x31 3x35 prostanoid_off15.98090YesNoYesNo57
24E2x51 Lig prostanoid_off21.44980NoYesYesYes60
25E2x51 E2x52 prostanoid_off27.67110.381124NoYesNoYes67
263x33 E2x52 prostanoid_off26.5482.43217YesNoNoYes77
273x33 5x43 prostanoid_off21.67740YesNoNoNo77
283x37 5x43 prostanoid_off11.26080YesNoNoNo87
296x48 7x45 prostanoid_off38.05474.83928YesYesYesYes89
306x44 6x48 prostanoid_off32.63350NoNoYesYes88
313x43 6x44 prostanoid_off31.470NoNoNoNo88
323x43 6x41 prostanoid_off30.29910NoNoNoNo88
335x54 6x41 prostanoid_off29.12090NoNoNoNo88
343x47 5x54 prostanoid_off27.93540NoNoNoNo98
353x47 5x57 prostanoid_off20.6680NoNoYesNo97
363x51 5x57 prostanoid_off16.93520NoYesYesNo87
373x50 3x54 prostanoid_off11.63150YesNoNoNo99
383x55 3x56 prostanoid_off10.56710NoNoNoNo77
39E2 E3 prostanoid_off13.49244.57851YesYesYesYes52
407x34 E2 prostanoid_off15.33491.07818NoNoYesYes65
416x58 E2 prostanoid_off15.33497.95346NoNoYesYes65
426x54 7x34 prostanoid_off14.53110YesNoNoNo66
436x54 7x37 prostanoid_off19.49350YesNoNoNo67
446x50 7x37 prostanoid_off14.66320NoNoNoNo97
456x54 6x58 prostanoid_off14.53116.9505YesNoNoNo66
466x33 8x47 prostanoid_off25.31110NoNoYesNo99
478x47 8x48 prostanoid_off11.61680YesNoYesNo96
48E2 NT prostanoid_off12.24080YesYesYesNo50
497x46 Lig Shared100100YesYesYesYes90
502x50 7x46 Shared57.023310.4659YesYesYesYes99
512x42 3x49 Shared30.772658.8285YesNoNoNo89
527x45 7x46 Shared53.39786.5453YesYesYesYes99
537x45 7x49 Shared43.097890.5321YesYesNoYes99
542x42 3x46 Shared30.027565.5333YesNoNoNo89
552x39 3x46 Shared28.632843.6287YesNoNoNo89
56E2 Lig Shared62.97378.1154YesYesYesYes50
573x51 3x55 Shared13.136427.6716NoYesNoNo87
581x42 7x43 prostanoid_on2.5802920.2848NoYesNoNo85
592x57 Lig prostanoid_on011.7296NoYesYesYes80
607x43 7x48 prostanoid_on1.2919813.2641NoNoNoNo57
617x48 7x51 prostanoid_on010.3856NoNoNoYes77
627x49 7x53 prostanoid_on099.3681NoYesYesYes99
633x46 7x53 prostanoid_on089.5793NoNoYesYes99
642x39 2x43 prostanoid_on026.5333YesNoNoNo88
653x35 Lig prostanoid_on010.1499YesNoYesYes70
662x64 E2 prostanoid_on014.2771YesNoYesYes65
67E1x50 E2 prostanoid_on7.8950313.8107YesNoYesYes65
683x49 I2x53 prostanoid_on055.7745NoNoNoNo98
69I2x53 I2x57 prostanoid_on054.0846NoNoNoNo87
70I2x52 I2x57 prostanoid_on053.0465NoYesNoNo57
713x52 I2x52 prostanoid_on015.8267NoNoNoYes65
723x48 3x52 prostanoid_on014.4376NoNoNoNo76
733x48 5x51 prostanoid_on013.0385NoNoNoNo77
742x39 3x50 prostanoid_on1.6957218.9058YesNoYesNo89
753x50 6x37 prostanoid_on017.5718YesNoNoYes98
763x56 I2x52 prostanoid_on7.9684335.0735NoNoNoYes75
773x51 3x56 prostanoid_on032.6463NoYesNoNo87
781x57 2x43 prostanoid_on025.2445YesYesNoNo88
791x57 2x40 prostanoid_on2.5802921.3179YesYesNoYes88
802x37 2x40 prostanoid_on1.2919815.6211NoNoNoYes78
811x61 2x37 prostanoid_on014.222NoYesNoNo07
821x61 2x41 prostanoid_on010.1901NoYesNoNo06
834x60 E2 prostanoid_on0.95063316.0022NoYesYesYes95
844x60 5x39 prostanoid_on0.007340811.4638NoYesNoNo98
854x56 5x39 prostanoid_on010.4809NoNoNoNo78
866x40 7x53 prostanoid_on3.8612631.7136NoNoYesYes89
876x47 7x45 prostanoid_on2.3967712.0305NoNoYesYes99
882x65 E2 prostanoid_on010.18NoNoYesYes45
896x36 6x40 prostanoid_on030.4899NoNoNoNo88
906x36 8x47 prostanoid_on029.2362NoNoYesNo89
913x55 5x64 prostanoid_on1.3433725.42NoNoNoNo77
925x64 6x34 prostanoid_on023.1834NoNoNoNo77
935x63 6x34 prostanoid_on020.8264NoNoNoNo37
945x63 6x30 prostanoid_on019.4574NoNoNoYes38
956x32 8x47 prostanoid_on025.0088NoYesYesNo89
962x64 E1 prostanoid_on2.8592413.3193YesNoNoYes64
972x67 E1 prostanoid_on015.8217NoNoNoYes04
98E1 E1x50 prostanoid_on012.878NoYesYesNo46
995x56 6x37 prostanoid_on013.0385NoNoNoYes48
1006x32 8x48 prostanoid_on1.5562511.1028NoYesYesNo86
1012x67 E1x52 prostanoid_on013.4146NoNoNoNo05
102E1x49 E1x52 prostanoid_on010.5862NoNoNoNo45
1031x42 Lig prostanoid_on021.358NoYesYesYes80

Here, those paths that begin and end at given residue pair(s) or that pass through a residue are used to generate a novel metapath. Such a path filtering is particularly recommended if some information on allosteric residues is available. The selection syntax for a residue pair ("Pairs") is C:C:c534,A:A:?600 (the lower-case "c" stands for cytosine and "?" indicates any non standard amino acid or nucleotide residue). Selection of more than one apical residue pair has the following syntax: C:C:c534,A:A:?600,C:C:c534,A:A:E41. Only one residue can be selected as a tail ("Tail"). For midway residue(s), each residue must be separated by a comma as well e.g. A:A:?600,A:A:E41.

Midway



Download PSN data

2D representation of the global metapath, ligand(s) interactions and
histograms of path distribution according to several parameters
(click on the image to enlarge it 🔍):

A 2D representation of the global communication in the network.

Number of shortest communication paths as a function of the average residue correlation.

Number of shortest communication paths as a function of the average interaction strength of their links.

Number of shortest communication paths as a function of the % of hub nodes in each path.

Number of shortest communication paths as a function of the number of nodes in each path.

Number of shortest communication paths as a function of the % of correlated nodes in each path.


2D representation of the interactions of this orthosteric/allosteric ligand.


Node1Node2OwnerNet1LinkStrengthNet2LinkStrengthComm1Comm2Node1ShellNode2Shell
1x392x60prostanoid_off4.18500011
1x432x57Shared8.695.904310021
2x493x35prostanoid_off3.46500021
2x503x39Shared8.313336.867221122
2x507x46Shared7.671675.550421121
2x533x35Shared8.606675.546110021
2x563x31Shared4.144.404170012
2x56LigShared4.083332.599440010
2x602x64prostanoid_off4.8016701011
2x60Ligprostanoid_off8.7166701010
2x64Ligprostanoid_off5.701110
3x28E1x50prostanoid_off4.5266700022
E1x50E2Shared7.111678.225831121
E1x50E2x50prostanoid_off5.8783301122
3x25E2prostanoid_off4.5633301021
3x25E2x50Shared7.287.281022
3x29E2Shared5.513338.366941021
3x313x35prostanoid_off3.8583300021
3x32LigShared8.953338.267640010
3x33E2x52Shared3.9255.974310122
3x343x35Shared8.216673.065830021
3x397x45prostanoid_off4.6316701122
3x397x46Shared4.685.041111121
4x59E2prostanoid_off5.1801021
4x595x39prostanoid_off3.7801022
4x60E2Shared9.6611.12361121
4x605x39Shared7.6052.702081122
5x39E2prostanoid_off5.1366701021
5x36E2Shared15.173.874581021
E2E2x50Shared3.873333.351111112
E2E2Shared93.203376.14791111
E2E2x51Shared10.218310.0751111
E2E3Shared9.6511.14321112
E2LigShared10.16679.088061110
7x34E2Shared7.2956.084861021
7x35E2Shared5.096678.363331111
7x38E2Shared10.5756.106251111
E2x51E2x52Shared10.22838.580281112
6x58E2Shared12.844.026251121
5x33E2prostanoid_off3.6616701021
5x335x36prostanoid_off5.7283301022
6x587x34prostanoid_off5.14501122
E3E3Shared19.09511.61921122
7x327x35prostanoid_off4.3483300121
7x357x39Shared6.4783310.62891111
7x35LigShared4.1453.882641110
7x38LigShared11.68334.387361110
7x39LigShared15.70336.764861110
7x42LigShared10.023312.11110110
7x457x46Shared3.4553.471251121
NTNTprostanoid_off26.5301022
E2NTprostanoid_off34.57501112
E3NTprostanoid_off12.161701122
7x31NTprostanoid_off5.7266700022
1x427x43Shared5.1656.711670112
2x64E1Shared6.293.058331112
3x25E1x50prostanoid_off3.701022
3x22E2prostanoid_off4.1466701021
3x366x48prostanoid_off5.0900012
E2x51Ligprostanoid_off6.2301110
5x33E3prostanoid_off5.9533301022
6x487x45Shared5.461677.752640122
E1E2prostanoid_off5.2016701121
E1NTprostanoid_off7.1533301122
7x46LigShared4.248335.172641110
1x427x47prostanoid_off3.41500112
2x547x46prostanoid_off3.3516700011
1x432x58prostanoid_off3.2666700022
2x523x35prostanoid_off3.0466700021
3x26E2Shared2.901673.275141121
1x362x65Shared2.8254.688330022
1x362x64prostanoid_off2.7766700021
1x352x64prostanoid_off2.61500021
1x392x61Shared2.4352.070012
1x381x39prostanoid_off2.41500021
1x432x61prostanoid_off1.9216700022
5x35E2Shared1.861673.263751021
1x462x54prostanoid_off1.8066700021
5x345x35prostanoid_off1.500122
4x594x63prostanoid_off1.1033301022
5x31E2prostanoid_off1.0966700021
3x365x461prostanoid_off1.0733300012
1x387x39prostanoid_on08.753610021
1x39Ligprostanoid_on08.346940010
1x427x39prostanoid_on03.269440111
1x427x42prostanoid_on03.598890111
1x42Ligprostanoid_on04.579580110
1x467x47prostanoid_on04.18750022
2x54Ligprostanoid_on014.28970010
2x57Ligprostanoid_on08.781810010
2x64E2prostanoid_on04.456941111
3x32E2x51prostanoid_on04.466530011
3x33E2x51prostanoid_on03.657080121
3x36Ligprostanoid_on03.341390010
4x60E2x52prostanoid_on03.384581122
E2E2x52prostanoid_on04.190831112
3x283x32prostanoid_on04.189440021
7x437x47prostanoid_on05.613750022
3x35Ligprostanoid_on03.5850010
2x603x28prostanoid_on010.84891012
E1E1x50prostanoid_on05.6651122
6x487x46prostanoid_on03.1050121
2x573x28prostanoid_on03.6250012
2x64E1x50prostanoid_on05.311671112
2x65E2prostanoid_on05.201670121
5x34E2prostanoid_on012.5750121
5x315x33prostanoid_on04.1150022
3x30E2prostanoid_on02.980121
4x594x60prostanoid_on02.916671022
3x22E1prostanoid_on02.891022
5x315x34prostanoid_on02.883330022
2x65NTprostanoid_on02.333330122
5x41E2x51prostanoid_on02.308890021
2x572x58prostanoid_on02.064720012
6x517x38prostanoid_on01.920970021
7x32E3prostanoid_on01.803750122
7x31E2prostanoid_on01.5050021
4x63E2prostanoid_on00.93750021
1x351x36prostanoid_on00.7911110022

Location and physicochemical properties of the interaction partners of this ligand

Interactions of this ligand

Difference Members
Id Description
prostanoid_off ep_off
tp_off
dp_off
prostanoid_on ep_on
fpa_on
Network Difference
Value prostanoid_off prostanoid_on
Imin 3.44 3.02542
Number of Linked Nodes 276 276
Number of Specific Nodes 18 (6.52%) 18  (6.52%)
Number of Shared Nodes 258 (93.48%) 258  (93.48%)
Number of Links 300 295
Number of Specific Links 197 (65.67%) 192  (65.08%)
Number of Shared Links 103 (34.33%) 103  (34.92%)
Number of Hubs 32 34
Number of Specific Hubs 21 (65.63%) 23  (67.65%)
Number of Shared Hubs 11 (34.38%) 11  (32.35%)
Average % Shared Neighbours (Jaccard) 20.92
Average % Shared Neighbours (Otsuka) 27.44
Average % Shared Neighbours (Overlap Coefficient) 34.22
Average % Shared Cliques (k3-6) 53.45
Graphlets Similarity 0.543053
Paths Difference
Value prostanoid_off prostanoid_on
Number Of Nodes in MetaPath 56 55
Specific Nodes in MetaPath 34 (60.71%) 33  (60.00%)
Shared Nodes in MetaPath 258 (93.48%) 258  (93.48%)
Number Of Links MetaPath 57 55
Specific Links in MetaPath 48 (84.21%) 46  (83.64%)
Shared Links in MetaPath 103 (34.33%) 103  (34.33%)
Number of Shortest Paths 49107 40696
Length Of Smallest Path 3 3
Average Path Length 13.5436 12.447
Length of Longest Path 29 30
Minimum Path Strength 0.478333 0.670694
Average Path Strength 5.41509 4.68996
Maximum Path Strength 24.8725 13.2004
Minimum Path Correlation 0.7 0.700556
Average Path Correlation 0.907942 0.89382
Maximum Path Correlation 0.986667 0.987083
Minimum % Of Corr. Nodes 4 3.57143
Average % Of Corr. Nodes 41.7294 41.1639
Maximum % Of Corr. Nodes 100 100
Minimum Path Hubs % 0 0
Average Path Hubs % 42.8684 43.0215
Maximum Path Hubs % 100 100

Details about the values in these tables can be found in the corresponding documentation page .

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