Orange: nodes, hubs and links specific of protein_off network

Green: nodes, hubs and links shared by both networks

Purple: nodes, hubs and links specific of protein_on network

Index: hub id, click on each number to highlight the corresponding hub in the 3D visualization.

Hub: the hub being considered.

Owner: the name of the network the hub belong to or "Shared" if the corresponding hub is present in both networks.

Avg Int. Strength: the average interaction strength of all the links of the corresponding hub in the corresponding network.

Num Of Links: the number of links of the corresponding hub in the corresponding network.

ConSurf: this column reports the ConSurf conservation grades of each hub.


Index Hub Owner protein_off Avg Int. Strength protein_on Avg Int. Strength protein_off Num Of Links protein_on Num Of Links ConSurf
11x43 protein_off00437
21x50 protein_off00429
31x53 protein_off500429
42x38 protein_off00436
52x40 protein_off00438
62x62 protein_off00414
73x37 protein_off87.527.5637
83x42 protein_off00427
93x49 protein_off5057.5538
103x50 protein_off500629
113x51 protein_off20.833321.875438
124x50 protein_off00629
134x65 protein_off500425
145x35 protein_off00423
155x47 protein_off00428
165x60 protein_off00424
176x44 protein_off5050439
187x35 protein_off500414
197x45 protein_off500529
207x56 protein_off00426
218x54 protein_off00437
221x35 Shared00646
231x39 Shared33.333312.5447
241x60 Shared00745
252x42 Shared093.75567
262x50 Shared5050449
272x53 Shared62.565.8333546
28E1x50 Shared10093.75758
29E1x52 Shared012.5457
30E2 Shared10010013143
315x58 Shared50100558
326x48 Shared10093.75659
336x51 Shared5050456
347x42 Shared37.591.25457
357x53 Shared5097.5959
36Lig Shared10010015220
37NT Shared5041.8751240
38E3 Shared62.512.51050
391x52 protein_on00146
401x59 protein_on00344
41I2x52 protein_on00244
424x41 protein_on00344
434x54 protein_on00244
445x50 protein_on00348
455x64 protein_on00145
466x59 protein_on00245
477x26 protein_on00341
487x55 protein_on00247
498x50 protein_on032.0833148
50I2x57 protein_on050247
   
Orange: nodes, hubs and links specific of protein_off network

Green: nodes, hubs and links shared by both networks

Purple: nodes, hubs and links specific of protein_on network

Index: link id, click on each number to highlight the corresponding link in the 3D visualization.

Node1 Node2: the two nodes of the corresponding link.

Owner: the name of the network the link belong to or "Shared" if the corresponding link is present in both networks.

Recurrence: the relative Recurrence in the filtered pool of shortest paths.

Hub1?, Hub2?: "Yes" if the corresponding node has more than 3 links, otherwise "No".

ConSurf1, ConSurf2: these columns report the ConSurf conservation grades of the two nodes involved in a link.


Index Node1 Node2 Owner protein_off Recurrence protein_on Recurrence protein_off Hub1? protein_on Hub1? protein_off Hub2? protein_on Hub2? ConSurf1 ConSurf2
12x54 2x57 protein_off17.26820NoNoNoNo67
21x46 2x54 protein_off15.12411.19243NoNoNoNo86
37x35 Lig protein_off13.0410YesNoYesYes40
46x48 6x51 protein_off1000YesYesYesYes96
52x53 6x48 protein_off54.41740YesYesYesYes69
62x53 7x46 protein_off33.28153.56465YesYesNoNo68
72x50 7x46 protein_off74.01260YesYesNoNo98
81x50 2x50 protein_off87.09561.5878YesNoYesYes99
96x48 7x45 protein_off27.53662.30579YesYesYesNo99
107x45 7x46 protein_off41.30280YesNoNoNo98
112x53 3x39 protein_off33.41180YesYesNoNo69
122x50 3x39 protein_off33.1681.5878YesYesNoNo99
131x50 7x50 protein_off41.52360.00948887YesNoNoNo99
141x53 7x50 protein_off40.45360YesNoNoNo99
151x50 2x47 protein_off42.68390YesNoNoNo99
161x53 2x47 protein_off40.5441.58464YesNoNoNo99
171x53 7x53 protein_off71.08860YesNoYesYes99
181x60 7x53 protein_off27.92760YesYesYesYes59
191x56 1x60 protein_off11.24380NoNoYesYes75
203x50 6x37 protein_off13.47820YesNoNoNo97
213x49 3x50 protein_off10.00990YesNoYesNo89
222x50 7x49 protein_off27.49880.0126518YesYesNoNo99
232x46 7x49 protein_off22.40353.14714NoNoNoNo99
242x46 3x42 protein_off21.11910NoNoYesNo97
253x42 4x50 protein_off14.5650YesNoYesNo79
26E1x50 E2 protein_off15.34690YesYesYesYes83
273x36 5x43 protein_off18.20570NoNoNoNo75
283x37 5x43 protein_off17.39644.58945YesNoNoNo75
29Lig NT protein_off21.6721.72065YesYesYesYes00
303x40 6x44 protein_off13.87130NoNoYesNo89
313x40 5x50 protein_off13.21345.72179NoNoNoYes88
323x44 5x50 protein_off10.53962.30579NoNoNoYes88
333x37 5x461 protein_off10.17590YesNoNoNo76
346x36 7x53 protein_off20.94470NoNoYesYes89
356x36 7x56 protein_off11.24380NoNoYesNo86
36E3 NT protein_off12.7530YesYesYesYes00
371x46 7x47 protein_off12.97580NoNoNoNo88
382x40 7x53 protein_off12.12240YesNoYesYes89
396x51 7x38 protein_off17.89251.8187YesYesNoNo65
407x42 Lig protein_off19.83480YesYesYesYes70
416x44 7x45 protein_off14.47040YesNoYesNo99
422x53 3x36 protein_off12.20860YesYesNoNo67
432x57 7x42 Shared31.612519.7621NoNoYesYes77
441x43 2x57 Shared12.769818.7152YesNoNoNo77
456x51 Lig Shared80.671811.7915YesYesYesYes60
466x44 6x48 Shared21.051999.4844YesNoYesYes99
475x54 6x44 Shared24.957499.5951NoNoYesNo89
483x47 5x54 Shared24.080999.8166NoNoNoNo98
493x47 5x58 Shared23.5196100NoNoYesYes98
505x58 6x37 Shared13.915510.4536YesYesNoNo87
51E2 Lig Shared24.652638.2718YesYesYesYes30
527x38 7x42 Shared17.009639.2175NoNoYesYes57
531x39 7x42 protein_on4.1641313.2591YesYesYesYes77
547x38 Lig protein_on0.090387438.1326NoNoYesYes50
553x43 7x53 protein_on010.8995NoNoYesYes89
563x50 7x53 protein_on047.3083YesNoYesYes99
573x50 5x58 protein_on047.6468YesNoYesYes98
583x36 6x48 protein_on6.8673498.1244NoNoYesYes79
593x36 Lig protein_on097.827NoNoYesYes70
606x40 7x53 protein_on048.3742NoNoYesYes89
615x58 6x40 protein_on050.4143YesYesNoNo88
627x56 8x48 protein_on010.191YesNoNoNo65
637x56 8x47 protein_on1.6122611.7346YesNoNoNo68
648x47 8x50 protein_on013.2718NoNoNoYes88
657x54 8x50 protein_on043.6962NoNoNoYes78
662x43 7x54 protein_on047.8492NoNoNoNo87
672x43 7x53 protein_on1.9990348.8803NoNoYesYes89
682x42 3x46 protein_on0.73150743.2218YesYesNoNo79
693x46 7x53 protein_on044.5407NoNoYesYes99
702x42 3x45 protein_on2.6653814.0435YesYesNoNo76
713x45 4x49 protein_on012.5221NoNoNoNo67
721x47 2x51 protein_on015.5364NoNoNoNo67
731x43 1x47 protein_on4.3491116.6024YesNoNoNo76
742x63 E1x50 protein_on0.70418113.471NoNoYesYes48
752x63 E2 protein_on014.2649NoNoYesYes43
763x34 4x57 protein_on013.471NoNoNoNo67
773x33 4x57 protein_on014.5528NoNoNoNo57
783x33 Lig protein_on016.5707NoNoYesYes50
793x51 5x57 protein_on6.2451424.8577YesNoNoNo87
803x47 5x57 protein_on026.863NoNoNoNo97
813x51 3x55 protein_on0.73991520.7711YesNoNoNo87
823x55 5x64 protein_on011.4341NoNoNoYes75
836x61 E3 protein_on0.65583410.4725NoNoYesYes40
846x61 Lig protein_on011.2918NoNoYesYes40
851x56 8x52 protein_on012.5854NoNoNoNo74
861x56 8x50 protein_on013.7747NoNoNoYes78
871x60 8x52 protein_on011.0387YesYesNoNo54
887x55 8x50 protein_on017.352NoYesNoYes78

Here, those paths that begin and end at given residue pair(s) or that pass through a residue are used to generate a novel metapath. Such a path filtering is particularly recommended if some information on allosteric residues is available. The selection syntax for a residue pair ("Pairs") is C:C:c534,A:A:?600 (the lower-case "c" stands for cytosine and "?" indicates any non standard amino acid or nucleotide residue). Selection of more than one apical residue pair has the following syntax: C:C:c534,A:A:?600,C:C:c534,A:A:E41. Only one residue can be selected as a tail ("Tail"). For midway residue(s), each residue must be separated by a comma as well e.g. A:A:?600,A:A:E41.

Midway



Download PSN data

2D representation of the global metapath, ligand(s) interactions and
histograms of path distribution according to several parameters
(click on the image to enlarge it 🔍):

A 2D representation of the global communication in the network.

Number of shortest communication paths as a function of the average residue correlation.

Number of shortest communication paths as a function of the average interaction strength of their links.

Number of shortest communication paths as a function of the % of hub nodes in each path.

Number of shortest communication paths as a function of the number of nodes in each path.

Number of shortest communication paths as a function of the % of correlated nodes in each path.


2D representation of the interactions of this orthosteric/allosteric ligand.


Node1Node2OwnerNet1LinkStrengthNet2LinkStrengthComm1Comm2Node1ShellNode2Shell
1x351x39Shared5.226675.548580022
1x397x39Shared4.215833.055170022
1x397x42Shared4.023335.283960021
2x533x36protein_off3.7762501021
2x536x48protein_off4.022501022
2x562x60protein_off5.0708300021
2x577x42Shared9.469175.624520021
2x603x32Shared7.459173.864191111
2x60LigShared14.31467.744421110
2x63E1x50Shared7.212928.844290122
E1x49E2Shared10.60335.466791021
E1x50E2protein_off4.7854201121
3x22E2Shared8.42754.514061021
3x32LigShared6.612087.173521110
3x333x37protein_off3.7933300112
3x334x61Shared16.09213.552540112
3x365x43protein_off4.2183301111
3x366x48Shared5.328755.774231112
3x375x43Shared4.065835.352770021
4x615x39protein_off7.9062500022
4x64E2Shared12.622115.17171121
4x645x35protein_off4.5095801122
4x65E2x52Shared6.386257.16761021
E2E2Shared44.123748.52291111
E2E2x52Shared5.35758.484231111
5x35E2Shared7.405426.480191121
5x36E2Shared6.6220810.7280121
5x446x56Shared6.830833.627231012
6x486x51protein_off6.1504201021
6x516x55Shared4.469589.3431112
6x517x38Shared5.389584.280061111
7x35Ligprotein_off6.0183301010
7x387x42Shared5.989583.94761111
7x38LigShared5.665835.497631110
7x42Ligprotein_off4.587501010
E2LigShared13.929624.27651110
6x51LigShared16.22384.734751110
7x34LigShared7.167924.478270110
LigNTShared20.822922.57921101
NTNTShared7.205838.991151111
1x357x35Shared8.35753.489350021
E2E2x51Shared11.11129.897541111
6x61E3Shared6.764585.12940112
7x357x39protein_off7.1387501012
4x614x65protein_off5.1937500022
6x58E3protein_off8.3637501112
E3E3protein_off5.7604201022
5x44Ligprotein_off5.6101010
6x54Ligprotein_off4.60501010
E3NTprotein_off6.8201021
E2NTprotein_off7.15501111
5x40NTprotein_off4.2501021
6x58NTprotein_off4.8701111
3x32NTprotein_off5.65501111
4x65NTprotein_off5.54501021
2x64E1x50protein_off4.5200022
7x307x33protein_off4.0400112
6x547x37protein_off3.6101012
5x325x35protein_off3.5962500022
1x357x31protein_off3.57500021
7x307x32protein_off3.56500112
7x33E3protein_off2.9801022
E1NTprotein_off2.87500111
1x427x39protein_off2.7700022
6x62E3protein_off2.537501012
1x387x35protein_off2.07500021
7x27LigShared1.800834.254060010
6x626x63protein_off1.6037501012
7x24NTShared1.516672.885460021
1x33NTprotein_off1.4100021
5x31E2protein_off1.117500021
1x28LigShared0.528751.704250110
6x65E3protein_off0.212500022
E2x51Ligprotein_on018.39040110
2x533x32protein_on07.843831021
2x537x42protein_on05.421461021
3x334x57protein_on04.529210112
5x39E2protein_on06.314190121
6x516x52protein_on04.94241112
6x547x34protein_on06.504061011
3x33Ligprotein_on04.837670110
5x315x35protein_on04.331870022
5x446x52protein_on05.683421012
6x587x30protein_on04.800211111
6x58Ligprotein_on09.546691110
6x61Ligprotein_on08.10650110
5x43Ligprotein_on05.470810110
E2x52Ligprotein_on04.530751110
7x30Ligprotein_on06.765940110
E1Ligprotein_on04.640110
2x63E2protein_on03.741210121
3x36Ligprotein_on03.623121110
5x32E2protein_on03.583350021
6x517x37protein_on03.425251112
7x31Ligprotein_on03.207210110
1x427x42protein_on03.13510021
2x67E2protein_on02.7650121
1x387x39protein_on02.370380022
2x64E1protein_on020021
6x547x33protein_on01.970541012
6x62Ligprotein_on01.742271010
1x247x31protein_on01.298750021
1x251x28protein_on00.3710021
6x657x30protein_on00.36550021

Location and physicochemical properties of the interaction partners of this ligand

Interactions of this ligand

Difference Members
Id Description
protein_off chemokine_off
grh_off
protein_on chemokine_on
chemerin_on
Network Difference
Value protein_off protein_on
Imin 3.76958 3.74181
Number of Linked Nodes 286 289
Number of Specific Nodes 4 (1.40%) 7  (2.42%)
Number of Shared Nodes 282 (98.60%) 282  (97.58%)
Number of Links 311 303
Number of Specific Links 173 (55.63%) 165  (54.46%)
Number of Shared Links 138 (44.37%) 138  (45.54%)
Number of Hubs 38 29
Number of Specific Hubs 21 (55.26%) 12  (41.38%)
Number of Shared Hubs 17 (44.74%) 17  (58.62%)
Average % Shared Neighbours (Jaccard) 32.17
Average % Shared Neighbours (Otsuka) 40.85
Average % Shared Neighbours (Overlap Coefficient) 49.72
Average % Shared Cliques (k3-6) 79.17
Graphlets Similarity 0.4618
Paths Difference
Value protein_off protein_on
Number Of Nodes in MetaPath 48 46
Specific Nodes in MetaPath 27 (56.25%) 25  (54.35%)
Shared Nodes in MetaPath 282 (98.60%) 282  (98.60%)
Number Of Links MetaPath 52 46
Specific Links in MetaPath 42 (80.77%) 36  (78.26%)
Shared Links in MetaPath 138 (44.37%) 138  (44.37%)
Number of Shortest Paths 78043 54583
Length Of Smallest Path 3 3
Average Path Length 13.4645 13.9447
Length of Longest Path 23 31
Minimum Path Strength 0.96125 0.589625
Average Path Strength 6.03564 5.79328
Maximum Path Strength 14.399 20.6758
Minimum Path Correlation 0.700417 0.70125
Average Path Correlation 0.898037 0.918053
Maximum Path Correlation 0.98375 0.987521
Minimum % Of Corr. Nodes 4.7619 3.57143
Average % Of Corr. Nodes 37.3169 40.4032
Maximum % Of Corr. Nodes 100 100
Minimum Path Hubs % 0 0
Average Path Hubs % 53.2643 33.3544
Maximum Path Hubs % 100 100

Details about the values in these tables can be found in the corresponding documentation page .

You can download a compressed (zip) file with structure(s), 3D outputs (as PyMol and VMD scripts) and numerical data files (as csv and plain text files).

Download protein_off_on.zip<



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