Orange: nodes, hubs and links specific of protein_off network

Green: nodes, hubs and links shared by both networks

Purple: nodes, hubs and links specific of protein_on network

Index: hub id, click on each number to highlight the corresponding hub in the 3D visualization.

Hub: the hub being considered.

Owner: the name of the network the hub belong to or "Shared" if the corresponding hub is present in both networks.

Avg Int. Strength: the average interaction strength of all the links of the corresponding hub in the corresponding network.

Num Of Links: the number of links of the corresponding hub in the corresponding network.

ConSurf: this column reports the ConSurf conservation grades of each hub.


Index Hub Owner protein_off Avg Int. Strength protein_on Avg Int. Strength protein_off Num Of Links protein_on Num Of Links ConSurf
11x35 protein_off00436
21x45 protein_off00415
31x53 protein_off33.33330428
41x60 protein_off00425
52x38 protein_off00426
63x31 protein_off00425
73x41 protein_off33.333312.5415
83x45 protein_off33.33330416
93x49 protein_off33.333310438
103x50 protein_off66.66670539
113x51 protein_off66.666737.5638
125x35 protein_off16.666710433
135x50 protein_off00439
146x44 protein_off33.333327.5639
156x51 protein_off33.333312.5537
167x37 protein_off00417
177x45 protein_off66.666720639
187x56 protein_off00437
19NT Shared66.666762.58104
201x39 Shared5017.5448
212x42 Shared33.333362.5467
22E1x50 Shared10050759
23E1x52 Shared025447
243x32 Shared83.333320447
253x37 Shared33.333358.75547
263x42 Shared33.333332.5447
274x50 Shared33.333312.5559
28E2 Shared10010015193
296x48 Shared10070669
30E3 Shared66.6667251084
317x42 Shared5041.25448
327x53 Shared66.666772.5759
33Lig Shared1007519180
341x47 protein_on00146
352x40 protein_on012.5368
362x45 protein_on00349
372x50 protein_on33.333350349
382x53 protein_on66.666737.5347
392x56 protein_on012.5247
403x25 protein_on012.5249
413x56 protein_on00256
42I2x52 protein_on00165
43I2x57 protein_on33.33330346
444x41 protein_on00143
45E2x50 protein_on00249
465x57 protein_on00248
475x58 protein_on33.333387.5379
485x62 protein_on00244
49I3 protein_on00153
506x54 protein_on00145
517x49 protein_on040249
528x50 protein_on038.75348
53E1 protein_on062.5170
54I1 protein_on012.5140
   
Orange: nodes, hubs and links specific of protein_off network

Green: nodes, hubs and links shared by both networks

Purple: nodes, hubs and links specific of protein_on network

Index: link id, click on each number to highlight the corresponding link in the 3D visualization.

Node1 Node2: the two nodes of the corresponding link.

Owner: the name of the network the link belong to or "Shared" if the corresponding link is present in both networks.

Recurrence: the relative Recurrence in the filtered pool of shortest paths.

Hub1?, Hub2?: "Yes" if the corresponding node has more than 3 links, otherwise "No".

ConSurf1, ConSurf2: these columns report the ConSurf conservation grades of the two nodes involved in a link.


Index Node1 Node2 Owner protein_off Recurrence protein_on Recurrence protein_off Hub1? protein_on Hub1? protein_off Hub2? protein_on Hub2? ConSurf1 ConSurf2
17x35 Lig protein_off10.02430NoNoYesYes30
27x38 7x42 protein_off13.41290NoNoYesYes68
31x49 7x50 protein_off12.63973.79701NoNoNoNo89
41x50 7x50 protein_off51.72525.04945NoNoNoNo99
51x50 2x50 protein_off55.73676.29467NoNoNoYes99
67x45 7x46 protein_off88.50010YesNoNoNo98
76x48 6x51 protein_off1000YesYesYesNo97
86x51 Lig protein_off90.2540YesNoYesYes70
91x53 7x50 protein_off41.0780YesNoNoNo89
101x53 7x53 protein_off24.84650YesNoYesYes89
111x60 7x53 protein_off11.72960YesNoYesYes59
122x42 3x45 protein_off24.77141.11528YesYesYesNo76
133x45 4x49 protein_off33.61610YesNoNoNo66
143x42 4x49 protein_off34.80016.29467YesYesNoNo76
152x42 3x49 protein_off16.74844.82567YesYesYesNo78
163x49 3x50 protein_off12.33050YesNoYesNo89
172x56 2x60 protein_off12.39232.37133NoYesNoNo77
18E1x50 E2 protein_off17.01350YesYesYesYes93
193x41 5x50 protein_off16.69540YesNoYesNo59
203x40 5x50 protein_off45.24854.38533NoNoYesNo79
213x40 6x44 protein_off46.3530NoNoYesNo79
223x43 6x41 protein_off10.8990NoNoNoNo88
233x43 6x44 protein_off16.00180NoNoYesNo89
243x48 5x57 protein_off25.12041.87685NoNoNoYes78
253x48 5x53 protein_off26.37510NoNoNoNo76
263x44 5x53 protein_off27.62091.10445NoNoNoNo76
273x44 5x50 protein_off28.8582.2053NoNoYesNo79
283x51 5x60 protein_off14.47763.75009YesNoNoNo84
296x59 6x60 protein_off11.46010NoNoNoNo55
306x60 E3 protein_off13.31571.28131NoNoYesYes54
31E3 NT protein_off14.99450YesYesYesYes44
326x51 7x37 protein_off12.44091.28131YesNoYesNo77
333x54 5x60 protein_off13.13450NoNoNoNo84
342x56 3x31 protein_off10.24083.26644NoYesYesNo75
351x53 1x57 protein_off14.30090YesNoNoNo87
362x64 E1x50 protein_off10.68260NoNoYesYes59
373x54 5x61 protein_off10.42191.86602NoNoNoNo88
382x63 E1x50 protein_off14.81330.516134NoNoYesYes49
392x63 Lig protein_off15.48490NoNoYesYes40
406x58 E3 protein_off13.01520NoNoYesYes44
416x58 Lig protein_off13.89449.73796NoNoYesYes40
426x44 7x45 protein_off24.45770YesNoYesNo99
43Lig NT Shared14.985615.6609YesYesYesYes04
442x50 7x46 Shared87.899398.0546NoYesNoNo98
456x48 7x45 Shared67.457522.4067YesYesYesNo99
462x46 3x42 Shared46.154226.7956NoNoYesYes97
472x46 7x49 Shared47.24127.9037NoNoNoYes99
482x50 7x49 Shared48.319100NoYesNoYes99
49E1x50 E1x52 Shared12.825316.8231YesYesYesYes97
506x44 6x48 Shared40.1911.0806YesNoYesYes99
513x51 5x57 Shared23.856928.0842YesNoNoYes88
52E2 Lig Shared41.802541.3268YesYesYesYes30
532x53 7x42 protein_on0.63176524.1067NoYesYesYes78
542x53 3x32 protein_on3.0616388.6992NoYesYesYes77
553x32 Lig protein_on2.045584.0793YesYesYesYes70
562x53 7x46 protein_on097.7478NoYesNoNo78
572x43 7x54 protein_on029.6614NoNoNoNo87
582x43 7x53 protein_on1.3518939.8073NoNoYesYes89
597x49 7x53 protein_on092.8896NoYesYesYes99
601x56 8x50 protein_on017.0613NoNoNoYes78
617x54 8x50 protein_on026.4094NoNoNoYes78
621x57 2x43 protein_on011.142NoNoNoNo78
631x56 8x53 protein_on015.8919NoNoNoNo75
642x42 3x46 protein_on1.4358317.5125YesYesNoNo79
653x46 3x50 protein_on018.5014NoNoYesNo99
663x50 7x53 protein_on047.8055YesNoYesYes99
673x42 4x50 protein_on8.4250113.0369YesYesYesYes79
683x25 E1x50 protein_on2.2796610.3299NoYesYesYes99
693x25 E2 protein_on010.745NoYesYesYes93
70E2 E2x50 protein_on010.5031YesYesNoYes39
717x45 7x49 protein_on025.3736YesNoNoYes99
723x50 5x58 protein_on036.5841YesNoNoYes99
735x58 6x40 protein_on033.5848NoYesNoNo98
746x40 7x53 protein_on035.2703NoNoYesYes89
755x57 5x58 protein_on029.5423NoYesNoYes89
763x51 3x55 protein_on1.4314122.746YesNoNoNo87
773x55 3x56 protein_on017.3428NoNoNoYes76
783x56 I2x52 protein_on010.6006NoYesNoYes65
795x58 6x37 protein_on032.6572NoYesNoNo98
805x62 6x37 protein_on030.9211NoYesNoNo48
815x65 6x34 protein_on7.6430323.9226NoNoNoNo86
825x62 6x34 protein_on025.684NoYesNoNo46
836x32 6x33 protein_on011.0373NoNoNoNo78
845x65 6x33 protein_on012.8636NoNoNoNo88
856x61 E3 protein_on1.8952912.9719NoNoYesYes44
866x61 Lig protein_on013.8309NoNoYesYes40

Here, those paths that begin and end at given residue pair(s) or that pass through a residue are used to generate a novel metapath. Such a path filtering is particularly recommended if some information on allosteric residues is available. The selection syntax for a residue pair ("Pairs") is C:C:c534,A:A:?600 (the lower-case "c" stands for cytosine and "?" indicates any non standard amino acid or nucleotide residue). Selection of more than one apical residue pair has the following syntax: C:C:c534,A:A:?600,C:C:c534,A:A:E41. Only one residue can be selected as a tail ("Tail"). For midway residue(s), each residue must be separated by a comma as well e.g. A:A:?600,A:A:E41.

Midway



Download PSN data

2D representation of the global metapath, ligand(s) interactions and
histograms of path distribution according to several parameters
(click on the image to enlarge it 🔍):

A 2D representation of the global communication in the network.

Number of shortest communication paths as a function of the average residue correlation.

Number of shortest communication paths as a function of the average interaction strength of their links.

Number of shortest communication paths as a function of the % of hub nodes in each path.

Number of shortest communication paths as a function of the number of nodes in each path.

Number of shortest communication paths as a function of the % of correlated nodes in each path.


2D representation of the interactions of this orthosteric/allosteric ligand.


Node1Node2OwnerNet1LinkStrengthNet2LinkStrengthComm1Comm2Node1ShellNode2Shell
NTNTShared8.21333624.5921111
LigNTShared35.6296.25751101
1x24LigShared7.551671.4710010
1x357x35Shared6.138332.5450021
2x533x32Shared4.128336.129250021
2x537x42Shared4.764.790880022
2x562x60Shared3.886673.802880021
2x603x32protein_off9.47501111
2x60LigShared11.9158.82151110
2x63E1x50Shared6.088337.386621112
2x63Ligprotein_off6.7916701110
E1x49E2Shared13.83335.4051021
3x25E1x50Shared4.575.22551122
E1x50E2protein_off4.5583301121
E1x50E2x50Shared12.195.842371122
3x22E2Shared8.718334.769251121
3x25E2x50Shared7.288.857751122
3x294x65Shared12.01679.900750122
3x32LigShared4.001674.9611110
3x334x61Shared13.76674.016630022
3x366x48Shared6.156675.020630022
4x605x39Shared5.776674.07050122
4x615x39protein_off6.52500022
4x64E2Shared12.45179.46451121
4x645x35Shared4.843334.2511122
4x65E2x52Shared4.591674.444250021
E2E2Shared41.0540.53821111
E2LigShared42.326725.16131110
E2E2x51Shared12.37838.3611111
E2x51LigShared5.43510.88911110
E2E2x52Shared7.4855.172621111
5x35E2Shared11.558.00451121
5x36E2Shared7.868337.623251021
5x39E2Shared5.613.98251121
5x32Ligprotein_off3.9616701010
5x345x35protein_off11.9601022
5x446x56Shared4.358332.659631012
6x486x51protein_off5.4716701021
6x516x55Shared4.176.66751012
6x517x38Shared6.641673.680631011
6x51Ligprotein_off10.80501010
6x58LigShared7.646672.973751110
6x61E3Shared4.611673.714630112
7x27LigShared8.135.624130010
7x31LigShared6.226674.335631110
7x34LigShared5.274.105250110
7x357x39protein_off5.6733301012
7x35Ligprotein_off4.11501010
7x38LigShared4.581675.82951110
5x325x35protein_off3.9116701012
7x387x42protein_off6.1301112
1x277x28Shared4.086672.5770022
3x323x36protein_off4.0866701112
4x61E2x52protein_off4.3666700021
E3E3Shared7.974.821631122
E3NTprotein_off4.5466701121
E2NTShared4.775.236871111
5x325x34protein_off5.1101012
6x58E3protein_off5.4766701112
5x44Ligprotein_off3.7401010
7x24NTShared3.642.2750021
7x367x37protein_off3.6283300022
6x486x52Shared3.593333.8171022
1x277x31protein_off3.400021
6x517x37Shared3.343332.87651012
7x337x37protein_off3.2333300022
1x25NTprotein_off3.1100011
6x54Ligprotein_off3.0700010
2x64E1x50protein_off3.0133300122
5x31E2protein_off2.7833300021
6x62E3protein_off2.1916700112
E1NTShared1.9166712.69120121
1x321x35protein_off100122
1x28E2protein_off0.87333300011
2x563x32protein_on04.266120021
3x25E2protein_on03.330251121
5x32E2protein_on03.637621011
5x315x35protein_on04.693880022
5x446x52protein_on03.7591012
6x61Ligprotein_on03.765750110
E2x52Ligprotein_on04.0071110
4x65E2x50protein_on03.399750022
E2E2x50protein_on04.150871112
7x31NTprotein_on03.2971111
1x32NTprotein_on04.576880121
2x63E1protein_on05.646251112
E1E2protein_on04.96250121
E1E1protein_on021.75130122
2x64NTprotein_on05.34750121
3x25E1protein_on04.0151122
3x29E2protein_on03.8750121
4x60E2protein_on04.531250121
6x547x34protein_on03.221370011
3x323x33protein_on03.1281112
6x536x54protein_on030021
5x406x58protein_on02.978250021
6x547x36protein_on02.1150012
1x28Ligprotein_on01.880250010
6x62Ligprotein_on01.71950110
7x28NTprotein_on01.7180121
5x315x34protein_on01.587130022
6x547x33protein_on01.339870012
5x29E2protein_on01.1050121
1x25Ligprotein_on00.8040010
6x626x63protein_on00.7760112

Location and physicochemical properties of the interaction partners of this ligand

Interactions of this ligand

Difference Members
Id Description
protein_off ccr_off
chemokine_off
gnrh_off
protein_on ccr_on
chemokine_on
gphr_on
chemerin_on
Network Difference
Value protein_off protein_on
Imin 3.85333 3.2875
Number of Linked Nodes 284 292
Number of Specific Nodes 3 (1.06%) 11  (3.77%)
Number of Shared Nodes 281 (98.94%) 281  (96.23%)
Number of Links 306 317
Number of Specific Links 154 (50.33%) 165  (52.05%)
Number of Shared Links 152 (49.67%) 152  (47.95%)
Number of Hubs 33 36
Number of Specific Hubs 18 (54.55%) 21  (58.33%)
Number of Shared Hubs 15 (45.45%) 15  (41.67%)
Average % Shared Neighbours (Jaccard) 34.39
Average % Shared Neighbours (Otsuka) 42.91
Average % Shared Neighbours (Overlap Coefficient) 51.28
Average % Shared Cliques (k3-6) 81.94
Graphlets Similarity 0.469606
Paths Difference
Value protein_off protein_on
Number Of Nodes in MetaPath 52 44
Specific Nodes in MetaPath 31 (59.62%) 23  (52.27%)
Shared Nodes in MetaPath 281 (98.94%) 281  (98.94%)
Number Of Links MetaPath 52 44
Specific Links in MetaPath 42 (80.77%) 34  (77.27%)
Shared Links in MetaPath 152 (49.67%) 152  (49.67%)
Number of Shortest Paths 45343 52664
Length Of Smallest Path 3 3
Average Path Length 12.2016 12.1502
Length of Longest Path 31 25
Minimum Path Strength 1.2625 0.530313
Average Path Strength 6.42834 5.76165
Maximum Path Strength 27.3892 36.294
Minimum Path Correlation 0.7 0.70125
Average Path Correlation 0.909241 0.913655
Maximum Path Correlation 0.986667 0.99175
Minimum % Of Corr. Nodes 3.57143 4.54545
Average % Of Corr. Nodes 40.7563 42.7874
Maximum % Of Corr. Nodes 100 100
Minimum Path Hubs % 0 0
Average Path Hubs % 43.0943 48.7219
Maximum Path Hubs % 100 100

Details about the values in these tables can be found in the corresponding documentation page .

You can download a compressed (zip) file with structure(s), 3D outputs (as PyMol and VMD scripts) and numerical data files (as csv and plain text files).

Download protein_off_on.zip<



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