Orange: nodes, hubs and links specific of somatostatin_off network

Green: nodes, hubs and links shared by both networks

Purple: nodes, hubs and links specific of somatostatin_on network

Index: hub id, click on each number to highlight the corresponding hub in the 3D visualization.

Hub: the hub being considered.

Owner: the name of the network the hub belong to or "Shared" if the corresponding hub is present in both networks.

Avg Int. Strength: the average interaction strength of all the links of the corresponding hub in the corresponding network.

Num Of Links: the number of links of the corresponding hub in the corresponding network.

ConSurf: this column reports the ConSurf conservation grades of each hub.


Index Hub Owner somatostatin_off Avg Int. Strength somatostatin_on Avg Int. Strength somatostatin_off Num Of Links somatostatin_on Num Of Links ConSurf
11x32 somatostatin_off10.12752.7025413
21x54 somatostatin_off4.72252.49583437
31x60 somatostatin_off7.9853.21292436
4I1x50 somatostatin_off7.5653.17917437
52x64 somatostatin_off5.0125.48514
63x38 somatostatin_off6.3888.59625537
73x50 somatostatin_off6.1426.87833539
84x56 somatostatin_off5.395.4825424
95x36 somatostatin_off8.9653.88708434
105x54 somatostatin_off4.90257.42125427
116x44 somatostatin_off10.71256.01833439
127x45 somatostatin_off6.39758.12875439
138x57 somatostatin_off3.3850.9075425
14Lig Shared24.67058.5805919190
151x39 Shared4.9483.9465557
162x40 Shared7.91753.80469448
172x42 Shared5.89755.8365457
182x50 Shared6.1784.95479569
192x53 Shared10.686.213456
20E1x50 Shared8.9858.35658
21E1x52 Shared9.79255.59354466
223x36 Shared8.565.48312447
233x37 Shared6.714.57875556
243x51 Shared4.965.838658
254x50 Shared5.8657.76813449
26E2 Shared21.716410.501211143
276x30 Shared6.77255.43675456
286x48 Shared10.72838.34875658
296x51 Shared7.3765.85825556
306x52 Shared10.1226.62281547
317x42 Shared6.111677.49425657
327x53 Shared6.7166.578559
338x50 Shared8.4743.2575568
342x41 somatostatin_on2.616673.23969345
352x46 somatostatin_on2.753.51437249
362x57 somatostatin_on4.093334.195357
373x32 somatostatin_on7.215.07375356
383x34 somatostatin_on4.576674.27531345
393x56 somatostatin_on7.0254.90281245
40I2x57 somatostatin_on8.364.27575355
414x38 somatostatin_on8.0851.69156246
424x61 somatostatin_on4.563.64031243
43E2x52 somatostatin_on10.18674.16375345
445x40 somatostatin_on4.016672.55437345
455x50 somatostatin_on6.8852.75406249
465x58 somatostatin_on8.95.52982279
475x62 somatostatin_on02.00281045
48I3 somatostatin_on03.42031040
496x26 somatostatin_on11.95.36719344
506x40 somatostatin_on5.966.68937148
516x49 somatostatin_on5.913333.50562345
527x39 somatostatin_on2.7954.65281245
537x49 somatostatin_on3.833.9435359
   
Orange: nodes, hubs and links specific of somatostatin_off network

Green: nodes, hubs and links shared by both networks

Purple: nodes, hubs and links specific of somatostatin_on network

Index: link id, click on each number to highlight the corresponding link in the 3D visualization.

Node1 Node2: the two nodes of the corresponding link.

Owner: the name of the network the link belong to or "Shared" if the corresponding link is present in both networks.

Recurrence: the relative Recurrence in the filtered pool of shortest paths.

Hub1?, Hub2?: "Yes" if the corresponding node has more than 3 links, otherwise "No".

ConSurf1, ConSurf2: these columns report the ConSurf conservation grades of the two nodes involved in a link.


Index Node1 Node2 Owner somatostatin_off Recurrence somatostatin_on Recurrence somatostatin_off Hub1? somatostatin_on Hub1? somatostatin_off Hub2? somatostatin_on Hub2? ConSurf1 ConSurf2
11x39 2x61 somatostatin_off10.18251.64625YesYesNoNo76
23x32 7x42 somatostatin_off14.01150.500177NoYesYesYes67
33x32 Lig somatostatin_off74.1657.2506NoYesYesYes60
42x54 2x57 somatostatin_off26.65026.54956NoNoNoYes67
51x47 2x54 somatostatin_off24.30970NoNoNoNo66
61x47 2x51 somatostatin_off23.33141.98889NoNoNoNo67
72x50 3x35 somatostatin_off98.32220YesYesNoNo97
82x53 3x35 somatostatin_off1008.34548YesYesNoNo67
92x53 3x32 somatostatin_off60.35348.22732YesYesNoYes66
101x60 8x53 somatostatin_off21.22769.33795YesNoNoNo65
118x53 I1x50 somatostatin_off27.45490NoNoYesNo57
128x50 I1x50 somatostatin_off31.47850YesYesYesNo87
137x53 8x50 somatostatin_off43.31250YesYesYesYes98
141x54 2x44 somatostatin_off22.95270YesNoNoNo76
151x54 2x51 somatostatin_off22.43730YesNoNoNo77
163x50 6x37 somatostatin_off50.54960YesNoNoNo98
173x46 6x37 somatostatin_off51.89610NoNoNoNo98
182x43 3x46 somatostatin_off70.4150NoNoNoNo89
192x43 7x53 somatostatin_off71.57730NoNoYesYes89
202x41 4x42 somatostatin_off10.81892.06372NoYesNoNo57
212x42 4x42 somatostatin_off12.27580YesYesNoNo77
222x44 2x45 somatostatin_off20.02840NoNoNoNo69
232x59 E1x52 somatostatin_off18.42955.58859NoNoYesYes56
24E2 E2x51 somatostatin_off20.75950YesYesNoNo34
25E2x51 Lig somatostatin_off21.72721.52416NoNoYesYes40
26E2 E2x52 somatostatin_off21.70624.22591YesYesNoYes35
273x29 E2x50 somatostatin_off12.14430NoNoNoNo59
283x29 Lig somatostatin_off15.57361.49659NoNoYesYes50
293x36 6x52 somatostatin_off23.08950YesYesYesYes77
305x51 5x54 somatostatin_off16.3730NoNoYesNo67
315x47 5x51 somatostatin_off21.74830NoNoNoNo86
325x47 6x52 somatostatin_off37.62168.41637NoNoYesYes87
333x50 6x34 somatostatin_off42.15010YesNoNoNo97
343x51 5x61 somatostatin_off26.08220YesYesNoNo89
353x54 5x61 somatostatin_off27.49172.07948NoNoNoNo89
363x54 6x30 somatostatin_off29.0170NoNoYesYes86
376x30 6x34 somatostatin_off40.74050YesYesNoNo67
385x36 Lig somatostatin_off14.36913.07983YesNoYesYes40
395x44 6x52 somatostatin_off10.95576.48261NoNoYesYes57
405x47 6x49 somatostatin_off13.66966.42354NoNoNoYes85
417x41 7x42 somatostatin_off43.33880NoNoYesYes77
421x53 7x53 somatostatin_off14.71620NoNoYesYes99
431x53 2x47 somatostatin_off13.33820NoNoNoNo99
441x54 2x47 somatostatin_off13.51712.06372YesNoNoNo79
451x39 7x42 somatostatin_off15.71030YesYesYesYes77
466x48 6x52 somatostatin_off15.08440YesYesYesYes87
472x57 7x42 Shared31.825645.3743NoYesYesYes77
487x49 7x53 Shared94.8877100NoYesYesYes99
492x50 7x49 Shared94.91425.6587YesYesNoYes99
502x42 3x46 Shared20.049431.8893YesYesNoNo79
512x45 4x50 Shared15.56328.8567NoNoYesYes99
52E1x50 E1x52 Shared19.670816.624YesYesYesYes86
53E1x50 E2 Shared20.259810.9054YesYesYesYes83
54E2x52 Lig Shared23.694311.2953NoYesYesYes50
553x36 3x37 Shared20.675320.5782YesYesYesYes76
563x36 Lig Shared45.595151.9948YesYesYesYes70
573x36 6x48 Shared12.165449.167YesYesYesYes78
586x51 6x52 Shared15.594610.1886YesYesYesYes67
596x48 7x41 Shared26.855310.2556YesYesNoNo87
602x53 7x42 Shared41.061431.7475YesYesYesYes67
616x51 7x41 Shared16.036410.0114YesYesNoNo67
621x39 2x57 somatostatin_on035.2566YesYesNoYes77
637x42 Lig somatostatin_on024.0203YesYesYesYes70
64E2 Lig somatostatin_on027.1238YesYesYesYes30
651x38 7x39 somatostatin_on3.2030712.4966NoNoNoYes55
661x39 7x39 somatostatin_on4.7914618.798YesYesNoYes75
672x50 7x46 somatostatin_on0.57855236.954YesYesNoNo98
682x53 7x46 somatostatin_on037.6511YesYesNoNo68
692x53 3x36 somatostatin_on012.1027YesYesYesYes67
702x44 I1x50 somatostatin_on042.9128NoNoYesNo67
712x41 I1x50 somatostatin_on044.7363NoYesYesNo57
722x41 4x46 somatostatin_on050.4431NoYesNoNo57
732x45 4x46 somatostatin_on3.1925552.2981NoNoNoNo97
743x34 4x50 somatostatin_on4.6967928.3329NoYesYesYes59
753x34 4x57 somatostatin_on031.8499NoYesNoNo57
764x57 4x61 somatostatin_on017.2187NoNoNoYes73
774x61 E2x52 somatostatin_on2.9821713.619NoYesNoYes35
781x56 8x50 somatostatin_on012.9534NoNoYesYes78
791x57 8x50 somatostatin_on1.5410531.4206NoNoYesYes78
801x57 2x44 somatostatin_on033.3701NoNoNoNo76
812x37 I2x57 somatostatin_on014.513NoNoNoYes75
823x49 I2x57 somatostatin_on5.8696726.4031NoNoNoYes85
832x42 3x49 somatostatin_on027.5413YesYesNoNo78
843x46 3x50 somatostatin_on032.992NoNoYesNo99
853x50 7x53 somatostatin_on072.0846YesNoYesYes99
867x45 7x49 somatostatin_on060.5175YesNoNoYes99
876x48 7x45 somatostatin_on8.3048461.0137YesYesYesNo89
882x37 2x40 somatostatin_on1.6883212.0555NoNoYesYes78
892x46 7x49 somatostatin_on0.55751323.0633NoYesNoYes99
902x46 3x42 somatostatin_on048.5999NoYesNoNo98
912x45 3x42 somatostatin_on046.7488NoNoNoNo98
923x37 5x43 somatostatin_on012.0633YesYesNoNo64
935x43 Lig somatostatin_on014.4264NoNoYesYes40
943x47 5x58 somatostatin_on5.4962431.0386NoNoNoYes99
953x50 5x58 somatostatin_on048.8401YesNoNoYes99
965x58 6x40 somatostatin_on044.5276NoYesNoYes98
976x40 7x53 somatostatin_on046.5677NoYesYesYes89
983x51 5x57 somatostatin_on5.0912524.4772YesYesNoNo87
993x47 5x57 somatostatin_on028.8961NoNoNoNo97
1005x40 6x55 somatostatin_on018.3963NoYesNoNo56
1016x55 Lig somatostatin_on014.7257NoNoYesYes60
1025x40 6x59 somatostatin_on4.5074411.5553NoYesNoNo54
1035x58 6x37 somatostatin_on053.2236NoYesNoNo98
1045x62 6x37 somatostatin_on051.089NoYesNoNo58
1055x62 6x30 somatostatin_on040.3962NoYesYesYes56
1066x26 6x30 somatostatin_on8.2785515.0289NoYesYesYes46
1077x55 8x50 somatostatin_on010.2398NoNoYesYes78
1081x56 8x53 somatostatin_on5.0912510.9291NoNoNoNo75
1096x27 6x30 somatostatin_on3.4029411.0236NoNoYesYes36
1103x37 4x57 somatostatin_on8.3732220.8066YesYesNoNo67
1112x46 3x43 somatostatin_on020.1095NoYesNoNo99
1123x43 7x53 somatostatin_on020.1883NoNoYesYes99

Here, those paths that begin and end at given residue pair(s) or that pass through a residue are used to generate a novel metapath. Such a path filtering is particularly recommended if some information on allosteric residues is available. The selection syntax for a residue pair ("Pairs") is C:C:c534,A:A:?600 (the lower-case "c" stands for cytosine and "?" indicates any non standard amino acid or nucleotide residue). Selection of more than one apical residue pair has the following syntax: C:C:c534,A:A:?600,C:C:c534,A:A:E41. Only one residue can be selected as a tail ("Tail"). For midway residue(s), each residue must be separated by a comma as well e.g. A:A:?600,A:A:E41.

Midway



Download PSN data

2D representation of the global metapath, ligand(s) interactions and
histograms of path distribution according to several parameters
(click on the image to enlarge it 🔍):

A 2D representation of the global communication in the network.

Number of shortest communication paths as a function of the average residue correlation.

Number of shortest communication paths as a function of the average interaction strength of their links.

Number of shortest communication paths as a function of the % of hub nodes in each path.

Number of shortest communication paths as a function of the number of nodes in each path.

Number of shortest communication paths as a function of the % of correlated nodes in each path.


2D representation of the interactions of this orthosteric/allosteric ligand.


Node1Node2OwnerNet1LinkStrengthNet2LinkStrengthComm1Comm2Node1ShellNode2Shell
5x36LigShared23.286.7751110
6x54Ligsomatostatin_off9.5201010
6x61Ligsomatostatin_off4.4200010
E3LigShared14.373.413751110
7x30Ligsomatostatin_off5.4101010
7x31LigShared14.252.5951010
7x34LigShared17.1111.64251110
3x29LigShared5.613.296251010
E2x51LigShared8.1911.40251010
E2x52LigShared7.934.46751110
3x32LigShared11.0610.23751110
3x36LigShared8.148.171251110
2x64Ligsomatostatin_off7.9401010
7x35Ligsomatostatin_off15.5201010
1x32Ligsomatostatin_off16.7901010
E1Ligsomatostatin_off13.8801010
1x301x32somatostatin_off8.7700021
1x322x64somatostatin_off4.4301011
1x32E1somatostatin_off10.5201011
1x351x39Shared8.212.866251022
1x352x64somatostatin_off4.4701021
1x357x35Shared6.794.37251021
1x392x64somatostatin_off5.0501021
1x397x42somatostatin_off4.9601021
2x533x32Shared5.974.628751121
2x537x42Shared12.3814.71121
2x577x42Shared4.698.011250021
2x603x28somatostatin_off4.4700012
2x63E1x50Shared10.955.826250112
E1x49E2Shared11.226.951121
3x25E1x50Shared3.928.326251122
E1x50E2Shared6.933.073751121
E1x50E2x50Shared18.288.491122
3x22E2Shared5.235.276250121
3x25E2x50Shared7.286.8251122
3x29E2x50somatostatin_off4.8601012
3x327x42Shared4.65.461111
3x363x37Shared10.543.771112
3x366x48Shared7.676.60751112
3x366x52somatostatin_off7.8901112
4x61E2x52Shared7.365.028750021
4x64E2Shared23.0217.57251121
E2E2Shared55.9736.531111
E2E2x51somatostatin_off5.8101111
E2E2x52Shared15.275.343751111
5x35E2Shared38.49.373750121
5x39E2Shared15.038.646251121
5x34E2somatostatin_off6.0300021
5x365x40somatostatin_off6.0401112
5x366x58somatostatin_off5.0901111
5x395x43somatostatin_off7.7801121
6x486x51somatostatin_off5.0101121
6x486x52somatostatin_off8.6801122
6x487x41Shared18.197.95251122
6x516x52Shared8.253.738751112
6x516x55Shared14.58.686251111
6x517x37somatostatin_off3.9301112
6x517x41Shared5.194.603751112
6x547x33somatostatin_off9.9501012
6x547x34Shared13.933.6551011
7x31E3somatostatin_off6.6901011
7x277x30Shared5.92.948750021
7x347x38Shared7.873.97751112
7x387x42Shared5.054.73250021
7x417x42somatostatin_off4.9901021
1x31Ligsomatostatin_off3.7200010
3x294x65somatostatin_off3.2201012
1x362x64somatostatin_off3.1700021
3x334x61somatostatin_off1.7600022
7x317x32somatostatin_off1.7401012
5x335x36somatostatin_off1.4500021
E2Ligsomatostatin_on04.92251110
5x43Ligsomatostatin_on05.5750110
6x51Ligsomatostatin_on08.84251110
7x42Ligsomatostatin_on04.56751110
2x63Ligsomatostatin_on04.191250110
2x533x36somatostatin_on03.383751121
2x647x35somatostatin_on05.481011
3x25E2somatostatin_on03.123751121
3x375x43somatostatin_on03.241250021
4x615x39somatostatin_on04.08250022
E2E2x50somatostatin_on03.3551112
5x36E2somatostatin_on04.386251111
5x406x55somatostatin_on03.54750021
5x436x52somatostatin_on03.27750112
6x517x38somatostatin_on03.421112
6x55Ligsomatostatin_on09.660110
2x60Ligsomatostatin_on08.15250010
6x547x37somatostatin_on04.041012
2x563x32somatostatin_on02.9450021
1x361x39somatostatin_on02.81750022
1x392x57somatostatin_on02.783751022
1x321x35somatostatin_on02.70251012
6x58Ligsomatostatin_on02.661250010
7x33E3somatostatin_on02.570021
6x546x57somatostatin_on02.43751012
3x323x33somatostatin_on02.09751112
E1E2somatostatin_on01.93251011
4x65E2x52somatostatin_on01.8150021
6x606x61somatostatin_on01.670021
7x327x35somatostatin_on01.25750021
1x291x31somatostatin_on01.126250021
7x30E3somatostatin_on01.071251011
1x291x30somatostatin_on00.921250022
5x345x36somatostatin_on00.50021

Location and physicochemical properties of the interaction partners of this ligand

Interactions of this ligand

Difference Members
Id Description
somatostatin_off sst2_off
somatostatin_on sst2_on
sst4_on
sst5_on
Network Difference
Value somatostatin_off somatostatin_on
Imin 3.92 2.95625
Number of Linked Nodes 253 266
Number of Specific Nodes 5 (1.98%) 18  (6.77%)
Number of Shared Nodes 248 (98.02%) 248  (93.23%)
Number of Links 283 302
Number of Specific Links 139 (49.12%) 158  (52.32%)
Number of Shared Links 144 (50.88%) 144  (47.68%)
Number of Hubs 33 40
Number of Specific Hubs 13 (39.39%) 20  (50.00%)
Number of Shared Hubs 20 (60.61%) 20  (50.00%)
Average % Shared Neighbours (Jaccard) 33.45
Average % Shared Neighbours (Otsuka) 42.79
Average % Shared Neighbours (Overlap Coefficient) 52.05
Average % Shared Cliques (k3-6) 52.70
Graphlets Similarity 0.634544
Paths Difference
Value somatostatin_off somatostatin_on
Number Of Nodes in MetaPath 56 60
Specific Nodes in MetaPath 25 (44.64%) 29  (48.33%)
Shared Nodes in MetaPath 248 (98.02%) 248  (98.02%)
Number Of Links MetaPath 61 66
Specific Links in MetaPath 46 (75.41%) 51  (77.27%)
Shared Links in MetaPath 144 (50.88%) 144  (50.88%)
Number of Shortest Paths 42908 63034
Length Of Smallest Path 3 3
Average Path Length 12.4996 12.2241
Length of Longest Path 29 30
Minimum Path Strength 1.44 0.486875
Average Path Strength 7.77815 5.40146
Maximum Path Strength 30.71 13.4731
Minimum Path Correlation 0.7 0.7
Average Path Correlation 0.923966 0.908709
Maximum Path Correlation 1 0.985
Minimum % Of Corr. Nodes 5 3.84615
Average % Of Corr. Nodes 53.5341 43.8435
Maximum % Of Corr. Nodes 100 100
Minimum Path Hubs % 0 0
Average Path Hubs % 42.7797 50.8781
Maximum Path Hubs % 100 100

Details about the values in these tables can be found in the corresponding documentation page .

You can download a compressed (zip) file with structure(s), 3D outputs (as PyMol and VMD scripts) and numerical data files (as csv and plain text files).

Download somatostatin_off_on.zip<



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