Orange: nodes, hubs and links specific of tachykinin_off network

Green: nodes, hubs and links shared by both networks

Purple: nodes, hubs and links specific of tachykinin_on network

Index: hub id, click on each number to highlight the corresponding hub in the 3D visualization.

Hub: the hub being considered.

Owner: the name of the network the hub belong to or "Shared" if the corresponding hub is present in both networks.

Avg Int. Strength: the average interaction strength of all the links of the corresponding hub in the corresponding network.

Num Of Links: the number of links of the corresponding hub in the corresponding network.

ConSurf: this column reports the ConSurf conservation grades of each hub.


Index Hub Owner tachykinin_off Avg Int. Strength tachykinin_on Avg Int. Strength tachykinin_off Num Of Links tachykinin_on Num Of Links ConSurf
11x35 tachykinin_off050534
21x50 tachykinin_off33.33330439
3I1x51 tachykinin_off00436
42x48 tachykinin_off00426
52x67 tachykinin_off00435
6E1x51 tachykinin_off00422
73x27 tachykinin_off00434
83x49 tachykinin_off33.33330429
94x50 tachykinin_off33.33330429
10E2x52 tachykinin_off33.33330434
115x40 tachykinin_off33.333350435
126x31 tachykinin_off00525
137x39 tachykinin_off66.66670535
148x50 tachykinin_off66.666725439
152x41 Shared33.33330445
162x42 Shared100100457
172x50 Shared66.6667100559
182x53 Shared33.333350447
192x57 Shared33.333375456
20E1x50 Shared66.666750648
21E1x52 Shared66.666725547
223x29 Shared33.33330445
233x33 Shared33.33330445
243x51 Shared33.333375558
253x55 Shared0100447
26I2 Shared100100786
274x61 Shared66.666725556
28E2 Shared10010010163
295x39 Shared66.666750456
305x47 Shared10050448
316x48 Shared66.6667100678
326x51 Shared66.6667100477
336x52 Shared66.6667100447
34E3 Shared33.33331005103
357x53 Shared10050549
36Lig Shared10010011210
37NT tachykinin_on0501114
381x31 tachykinin_on025342
391x39 tachykinin_on33.333350347
402x38 tachykinin_on050246
412x40 tachykinin_on050248
422x56 tachykinin_on050145
432x61 tachykinin_on0100246
442x62 tachykinin_on33.33330346
452x64 tachykinin_on075254
462x68 tachykinin_on050144
473x24 tachykinin_on33.33330345
483x28 tachykinin_on66.666750365
493x31 tachykinin_on050344
503x36 tachykinin_on050347
513x37 tachykinin_on050357
523x56 tachykinin_on33.33330346
534x42 tachykinin_on050347
54E2x50 tachykinin_on00249
555x34 tachykinin_on00241
565x36 tachykinin_on33.33330344
575x58 tachykinin_on33.333375359
586x37 tachykinin_on050258
596x44 tachykinin_on050349
606x54 tachykinin_on0100264
616x55 tachykinin_on050346
627x31 tachykinin_on00144
637x34 tachykinin_on075355
647x35 tachykinin_on050143
657x38 tachykinin_on66.666775255
667x49 tachykinin_on33.33330349
678x48 tachykinin_on050354
   
Orange: nodes, hubs and links specific of tachykinin_off network

Green: nodes, hubs and links shared by both networks

Purple: nodes, hubs and links specific of tachykinin_on network

Index: link id, click on each number to highlight the corresponding link in the 3D visualization.

Node1 Node2: the two nodes of the corresponding link.

Owner: the name of the network the link belong to or "Shared" if the corresponding link is present in both networks.

Recurrence: the relative Recurrence in the filtered pool of shortest paths.

Hub1?, Hub2?: "Yes" if the corresponding node has more than 3 links, otherwise "No".

ConSurf1, ConSurf2: these columns report the ConSurf conservation grades of the two nodes involved in a link.


Index Node1 Node2 Owner tachykinin_off Recurrence tachykinin_on Recurrence tachykinin_off Hub1? tachykinin_on Hub1? tachykinin_off Hub2? tachykinin_on Hub2? ConSurf1 ConSurf2
11x35 7x32 tachykinin_off14.21355.29891YesNoNoNo41
21x35 7x39 tachykinin_off23.91680YesNoYesNo45
31x39 2x62 tachykinin_off11.80413.68722NoYesNoYes76
47x39 7x43 tachykinin_off17.36480YesNoNoNo55
57x43 7x48 tachykinin_off14.92259.68422NoNoNoNo55
67x34 7x38 tachykinin_off55.26528.52699NoYesNoYes55
76x54 7x34 tachykinin_off58.74471.14318NoYesNoYes45
86x54 6x55 tachykinin_off60.81282.43628NoYesNoYes46
93x43 6x44 tachykinin_off86.56120NoNoNoYes89
102x46 3x43 tachykinin_off86.04250NoNoNoNo98
112x46 2x50 tachykinin_off85.54363.36863NoNoYesYes99
122x50 7x46 tachykinin_off11.88944.81634YesYesNoNo99
136x55 Lig tachykinin_off41.81331.11975NoYesYesYes60
146x48 Lig tachykinin_off86.46270YesYesYesYes80
153x32 Lig tachykinin_off57.12320NoNoYesYes60
162x57 3x31 tachykinin_off54.3330YesYesNoYes64
172x53 3x31 tachykinin_off60.81280YesYesNoYes74
182x48 2x53 tachykinin_off56.28280YesNoYesYes67
191x57 8x50 tachykinin_off36.11480NoNoYesNo79
201x58 2x44 tachykinin_off32.08380NoNoNoNo26
216x36 7x53 tachykinin_off23.99550NoNoYesYes89
226x36 8x47 tachykinin_off19.11760NoNoNoNo88
238x47 8x49 tachykinin_off37.93331.49457NoNoNoNo86
248x49 I1x50 tachykinin_off19.33430NoNoNoNo67
251x60 I1x50 tachykinin_off16.10430NoNoNoNo57
268x47 8x50 tachykinin_off25.63030.15461NoNoYesNo89
271x58 I1x51 tachykinin_off31.36163.89337NoNoYesNo26
282x48 4x50 tachykinin_off54.72690YesNoYesNo69
292x45 4x50 tachykinin_off53.26943.09689NoNoYesNo99
302x45 4x46 tachykinin_off52.46855.57065NoNoNoNo98
312x42 4x46 tachykinin_off52.14684.94284YesYesNoNo78
322x42 4x42 tachykinin_off50.88637.73051YesYesNoYes77
332x41 4x42 tachykinin_off32.93729.97002YesYesNoYes57
342x38 4x42 tachykinin_off59.76890.243628NoYesNoYes67
352x38 3x49 tachykinin_off58.37710NoYesYesNo69
362x67 E1x51 tachykinin_off12.18490YesNoYesNo52
37E1x51 E1x52 tachykinin_off11.39710YesNoYesYes27
383x24 3x27 tachykinin_off10.11698.24119NoYesYesNo54
393x28 E1x50 tachykinin_off20.43070NoYesYesYes58
403x29 4x61 tachykinin_off18.97980.431034YesYesYesYes56
413x33 Lig tachykinin_off15.59876.09539YesYesYesYes50
423x33 4x57 tachykinin_off12.51970.824588YesYesNoNo57
433x30 4x57 tachykinin_off10.46480NoNoNoNo67
443x40 6x44 tachykinin_off42.10874.90536NoNoNoYes79
453x41 5x50 tachykinin_off36.04258.00693NoNoNoNo59
463x37 3x41 tachykinin_off13.34690NoYesNoNo75
473x41 3x44 tachykinin_off21.42860NoNoNoNo57
483x44 5x54 tachykinin_off17.1353.16248NoNoNoNo78
493x47 5x54 tachykinin_off12.78890NoNoNoNo98
503x47 5x58 tachykinin_off10.59611.57421NoNoNoYes99
513x49 I2 tachykinin_off51.60197.99756YesNoYesYes96
523x51 3x56 tachykinin_off13.26168.74719YesYesNoYes86
533x55 3x56 tachykinin_off27.96748.11938YesYesNoYes76
545x36 Lig tachykinin_off19.09140NoYesYesYes40
555x36 E2 tachykinin_off16.46534.33377NoYesYesYes43
565x40 Lig tachykinin_off10.18250YesNoYesYes50
576x52 Lig tachykinin_off13.93780YesYesYesYes70
585x47 6x52 tachykinin_off10.74715.71121YesYesYesYes87
593x54 3x55 tachykinin_off25.80750NoNoYesYes87
603x54 5x61 tachykinin_off24.13341.33527NoNoNoNo88
615x61 6x34 tachykinin_off22.45930NoNoNoNo86
625x65 6x34 tachykinin_off21.03477.76799NoNoNoNo86
635x65 6x31 tachykinin_off17.62080NoNoYesNo85
648x48 8x49 tachykinin_off15.8220NoYesNoNo46
656x48 7x45 tachykinin_off22.51181.61169YesYesNoNo89
666x47 7x45 tachykinin_off20.62760NoNoNoNo89
676x47 7x40 tachykinin_off18.73032.4316NoNoNoNo87
686x50 7x40 tachykinin_off16.81990NoNoNoNo97
696x50 7x37 tachykinin_off14.89632.49719NoNoNoNo96
707x33 7x37 tachykinin_off12.95960NoNoNoNo56
717x30 7x33 tachykinin_off11.00970NoNoNoNo45
721x55 1x60 tachykinin_off12.86110NoNoNoNo45
733x28 3x29 tachykinin_off20.15490NoYesYesYes55
741x39 7x39 Shared47.255828.6123NoYesYesNo75
751x39 7x38 Shared53.354829.6383NoYesNoYes75
766x51 6x55 Shared20.81811.6379YesYesNoYes76
776x48 6x51 Shared21.067586.2444YesYesYesYes87
786x44 6x48 Shared10094.1951NoYesYesYes98
791x50 2x50 Shared11.889414.2054YesNoYesYes99
802x50 7x49 Shared77.455419.8838YesYesNoYes99
817x49 7x53 Shared74.711129.7273NoYesYesYes99
827x53 8x50 Shared52.77721.5049YesYesYesNo99
831x56 8x50 Shared13.300920.3055NoNoYesNo89
842x57 3x32 Shared56.617611.9659YesYesNoNo66
851x57 2x44 Shared32.983234.2391NoNoNoNo76
862x41 I1x51 Shared30.810111.6614YesYesYesNo56
874x61 Lig Shared24.829313.3527YesYesYesYes60
883x40 5x50 Shared40.099811.146NoNoNoNo79
893x56 I2 Shared42.73922.8776NoYesYesYes66
907x31 7x35 tachykinin_on011.666NoYesNoYes43
916x51 7x38 tachykinin_on027.4035YesYesNoYes75
926x51 Lig tachykinin_on1.7003772.2498YesYesYesYes70
93Lig NT tachykinin_on015.55YesYesNoYes04
941x42 7x39 tachykinin_on2.5144423.9365NoNoYesNo75
951x42 7x47 tachykinin_on019.2232NoNoNoNo77
962x43 7x53 tachykinin_on1.9629750.4076NoNoYesYes89
972x43 3x46 tachykinin_on080.6081NoNoNoNo89
983x46 3x50 tachykinin_on081.0954NoNoNoNo99
993x50 5x58 tachykinin_on069.6589NoNoNoYes99
1005x54 5x58 tachykinin_on098.9552NoNoNoYes89
1015x54 6x44 tachykinin_on0100NoNoNoYes89
1027x54 8x54 tachykinin_on1.976110.4479NoNoNoNo76
1037x54 8x48 tachykinin_on011.8909NoNoNoYes74
1041x56 8x48 tachykinin_on018.0566NoNoNoYes84
1051x54 2x48 tachykinin_on1.7463235.3495NoNoYesNo76
1062x48 2x52 tachykinin_on1.7463235.9117YesNoNoNo66
1072x52 3x31 tachykinin_on032.2433NoNoNoYes64
1083x31 3x32 tachykinin_on033.3162NoYesNoNo46
1093x28 3x32 tachykinin_on022.5122NoYesNoNo56
1103x28 Lig tachykinin_on030.3645NoYesYesYes50
1111x54 2x44 tachykinin_on034.5343NoNoNoNo76
1121x57 2x40 tachykinin_on3.8799934.0189NoNoNoYes78
1132x40 2x43 tachykinin_on049.0302NoYesNoNo88
1142x37 2x39 tachykinin_on063.0013NoNoNoNo78
1152x39 2x40 tachykinin_on064.6692NoNoNoYes88
1162x38 I2 tachykinin_on013.0763NoYesYesYes66
1172x37 I2 tachykinin_on061.2865NoNoYesYes76
1184x42 I2 tachykinin_on017.9442NoYesYesYes76
1193x30 4x59 tachykinin_on027.9657NoNoNoNo64
1204x59 4x60 tachykinin_on2.0220623.6413NoNoNoNo48
1214x60 5x39 tachykinin_on3.8537327.1177NoNoYesYes86
1225x39 E2 tachykinin_on1.582213.7181YesYesYesYes63
1234x63 4x64 tachykinin_on2.0548811.6379NoNoNoNo45
1244x64 E2 tachykinin_on3.7355613.0201NoNoYesYes53
1253x30 4x54 tachykinin_on6.3156516.8057NoNoNoNo64
1263x34 4x54 tachykinin_on011.2116NoNoNoNo54
1275x61 6x37 tachykinin_on027.4691NoNoNoYes88
1285x58 6x37 tachykinin_on3.9325126.9209NoYesNoYes98
1295x61 5x62 tachykinin_on024.8829NoNoNoNo85
1305x62 6x34 tachykinin_on023.4586NoNoNoNo56
1315x66 6x34 tachykinin_on014.7161NoNoNoNo46
1325x66 6x31 tachykinin_on5.4884510.209NoNoYesNo45
1336x37 6x40 tachykinin_on010.5369NoYesNoNo87
1347x47 7x48 tachykinin_on9.9986914.4725NoNoNoNo75
1357x31 Lig tachykinin_on012.7624NoYesYesYes40
136E2 Lig tachykinin_on036.4786YesYesYesYes30
137E3 Lig tachykinin_on010.3729YesYesYesYes30
1384x61 5x39 tachykinin_on6.0924411.666YesYesYesYes66
1393x36 6x48 tachykinin_on1.3655513.6479NoYesYesYes78
1403x50 6x37 tachykinin_on011.9331NoNoNoYes98

Here, those paths that begin and end at given residue pair(s) or that pass through a residue are used to generate a novel metapath. Such a path filtering is particularly recommended if some information on allosteric residues is available. The selection syntax for a residue pair ("Pairs") is C:C:c534,A:A:?600 (the lower-case "c" stands for cytosine and "?" indicates any non standard amino acid or nucleotide residue). Selection of more than one apical residue pair has the following syntax: C:C:c534,A:A:?600,C:C:c534,A:A:E41. Only one residue can be selected as a tail ("Tail"). For midway residue(s), each residue must be separated by a comma as well e.g. A:A:?600,A:A:E41.

Midway



Download PSN data

2D representation of the global metapath, ligand(s) interactions and
histograms of path distribution according to several parameters
(click on the image to enlarge it 🔍):

A 2D representation of the global communication in the network.

Number of shortest communication paths as a function of the average residue correlation.

Number of shortest communication paths as a function of the average interaction strength of their links.

Number of shortest communication paths as a function of the % of hub nodes in each path.

Number of shortest communication paths as a function of the number of nodes in each path.

Number of shortest communication paths as a function of the % of correlated nodes in each path.


2D representation of the interactions of this orthosteric/allosteric ligand.


Node1Node2OwnerNet1LinkStrengthNet2LinkStrengthComm1Comm2Node1ShellNode2Shell
1x281x31Shared12.63336.31754122
2x572x61Shared4.086676.13255121
2x573x31tachykinin_off6.0405122
2x573x32Shared7.66.525121
2x603x24Shared6.318.10250122
2x613x28Shared8.926677.080111
2x64E1x50Shared8.036675.0650112
2x67E1x51tachykinin_off7.2607122
3x25E1x50tachykinin_off4.3533306122
3x28E1x50tachykinin_off7.4066700112
E1x50E2x50Shared9.143336.85756021
3x25E2x50Shared7.283.646121
3x283x29tachykinin_off8.0800111
3x294x61Shared6.65.611111
3x294x65Shared5.463335.961112
3x29E2x52tachykinin_off6.6101112
3x32Ligtachykinin_off11.423300110
3x334x61Shared5.492.7451111
3x335x43tachykinin_off4.6101112
3x33LigShared7.316677.76751110
3x365x461tachykinin_off6.0566701111
3x366x48Shared6.035.0551111
3x36Ligtachykinin_off4.7866701110
3x406x44Shared10.46675.65250122
4x615x39Shared7.513337.04751112
4x61LigShared19.21334.421110
4x64E2Shared16.136710.3651121
4x65E2x52tachykinin_off4.6433301022
E2E2Shared41.9834.50251111
E2E2x51Shared8.733.1751111
E2E2x52Shared6.653336.7551112
5x35E2Shared8.906675.73750121
5x36E2Shared17.13679.03251111
5x39E2Shared5.466675.3051121
5x36Ligtachykinin_off4.1866701110
5x395x43Shared5.886676.6251122
5x406x56tachykinin_off4.7166700012
5x406x59Shared6.533337.07750012
5x40Ligtachykinin_off13.996700010
5x446x52Shared9.126678.790021
5x446x56Shared5.403332.580022
5x4616x52tachykinin_off3.9766701011
5x461Ligtachykinin_off5.2566701010
5x476x52Shared6.896674.62750021
6x446x48Shared10.35677.01750121
6x486x51Shared8.686677.191111
6x487x41Shared5.186674.86251112
6x487x45Shared6.586676.1751112
6x48Ligtachykinin_off5.6066701110
6x516x55Shared8.9333311.30251111
6x517x41Shared4.623335.09751112
6x51LigShared19.11337.58751110
6x52Ligtachykinin_off5.5033301110
6x546x55Shared8.933336.10111
6x547x34Shared7.5633313.340111
6x55LigShared18.569.7051110
6x576x58tachykinin_off4.9266700022
E3E3Shared19.376712.633111
7x347x38Shared9.988.750112
4x61E2x52Shared4.116675.981112
2x64E1x51tachykinin_off4.6333300112
1x28NTtachykinin_off3.8104121
2x68E2Shared3.85.32750111
6x61E3Shared3.633333.54253121
3x334x57Shared3.253.251112
5x335x36Shared3.154.38750021
5x31E2Shared2.546674.95751021
2x533x31tachykinin_off2.4866700022
5x405x41tachykinin_off2.2100012
6x58E3Shared2.1466710.5453021
1x317x32tachykinin_off2.1333304122
2x677x31tachykinin_off2.0607121
7x337x37tachykinin_off2.0500022
2x657x34Shared1.333332.670021
7x30E3Shared1.213.933111
7x297x32tachykinin_off1.1700122
7x307x33tachykinin_off1.0233303112
NTNTtachykinin_on011.830111
E2NTtachykinin_on08.47751111
E3NTtachykinin_on03.733111
LigNTtachykinin_on011.0751101
2x68NTtachykinin_on04.950111
7x31NTtachykinin_on014.19250111
2x67NTtachykinin_on03.8057121
1x31NTtachykinin_on02.884121
1x32NTtachykinin_on06.62250121
7x32NTtachykinin_on03.280121
2x533x36tachykinin_on05.24750021
2x573x28tachykinin_on02.875121
2x577x38tachykinin_on03.56255122
2x603x28tachykinin_on011.25750121
2x617x34tachykinin_on04.36250111
2x61Ligtachykinin_on03.60110
2x642x68tachykinin_on02.61750111
2x64E2tachykinin_on012.18250111
2x64Ligtachykinin_on08.88250110
2x68Ligtachykinin_on06.6450110
3x22E2tachykinin_on04.420121
3x243x28tachykinin_on04.91750121
3x254x65tachykinin_on03.016122
3x25E2tachykinin_on06.786121
3x283x32tachykinin_on03.43250111
3x29E2x50tachykinin_on02.7551111
3x29Ligtachykinin_on02.74751110
3x313x32tachykinin_on05.0555121
3x333x37tachykinin_on05.021112
3x363x37tachykinin_on05.041112
3x374x57tachykinin_on02.770122
3x375x461tachykinin_on012.87250121
3x406x48tachykinin_on04.69750121
E2Ligtachykinin_on015.931110
E2x50Ligtachykinin_on04.8256110
E2x51Ligtachykinin_on06.34250110
5x34E2tachykinin_on04.990121
5x345x35tachykinin_on03.760122
5x366x59tachykinin_on05.521112
5x395x40tachykinin_on07.07751121
5x406x55tachykinin_on05.37250011
5x435x461tachykinin_on04.22250021
6x486x52tachykinin_on02.90751111
6x516x52tachykinin_on06.61751111
6x517x38tachykinin_on04.1351112
6x54E3tachykinin_on08.92750111
6x547x30tachykinin_on07.3450111
6x547x37tachykinin_on03.770112
6x57E3tachykinin_on04.15250021
E3Ligtachykinin_on07.0553110
7x297x33tachykinin_on03.27750122
7x30Ligtachykinin_on04.713110
7x317x32tachykinin_on03.20112
7x31Ligtachykinin_on07.61250110
7x34Ligtachykinin_on011.60750110
2x532x57tachykinin_on03.1550022
3x28Ligtachykinin_on02.88750110
6x54Ligtachykinin_on02.97750110
7x29E3tachykinin_on07.87250121
7x317x35tachykinin_on02.99250112
2x642x67tachykinin_on03.2650112
3x366x51tachykinin_on03.591111
5x36E2x52tachykinin_on04.471112
7x28Ligtachykinin_on04.840010
5x416x56tachykinin_on02.140022

Location and physicochemical properties of the interaction partners of this ligand

Interactions of this ligand

Difference Members
Id Description
tachykinin_off nk1_off
tachykinin_on nk1_on
nk2_on
Network Difference
Value tachykinin_off tachykinin_on
Imin 3.91 2.5925
Number of Linked Nodes 257 254
Number of Specific Nodes 6 (2.33%) 3  (1.18%)
Number of Shared Nodes 251 (97.67%) 251  (98.82%)
Number of Links 285 326
Number of Specific Links 108 (37.89%) 149  (45.71%)
Number of Shared Links 177 (62.11%) 177  (54.29%)
Number of Hubs 36 53
Number of Specific Hubs 14 (38.89%) 31  (58.49%)
Number of Shared Hubs 22 (61.11%) 22  (41.51%)
Average % Shared Neighbours (Jaccard) 46.71
Average % Shared Neighbours (Otsuka) 56.89
Average % Shared Neighbours (Overlap Coefficient) 67.25
Average % Shared Cliques (k3-6) 52.19
Graphlets Similarity 0.655206
Paths Difference
Value tachykinin_off tachykinin_on
Number Of Nodes in MetaPath 89 67
Specific Nodes in MetaPath 50 (56.18%) 28  (41.79%)
Shared Nodes in MetaPath 251 (97.67%) 251  (97.67%)
Number Of Links MetaPath 89 67
Specific Links in MetaPath 73 (82.02%) 51  (76.12%)
Shared Links in MetaPath 177 (62.11%) 177  (62.11%)
Number of Shortest Paths 40220 55060
Length Of Smallest Path 3 3
Average Path Length 14.5577 12.5965
Length of Longest Path 34 28
Minimum Path Strength 0.523333 0.76
Average Path Strength 6.56835 5.17813
Maximum Path Strength 19.1633 12.4813
Minimum Path Correlation 0.7 0.7
Average Path Correlation 0.922511 0.911983
Maximum Path Correlation 0.99 0.99
Minimum % Of Corr. Nodes 3.125 4.54545
Average % Of Corr. Nodes 47.652 44.2647
Maximum % Of Corr. Nodes 100 100
Minimum Path Hubs % 0 0
Average Path Hubs % 36.4755 48.006
Maximum Path Hubs % 100 100

Details about the values in these tables can be found in the corresponding documentation page .

You can download a compressed (zip) file with structure(s), 3D outputs (as PyMol and VMD scripts) and numerical data files (as csv and plain text files).

Download tachykinin_off_on.zip<



You can click to copy the link of this page to easily come back here later

or use this QR code to link and share this page.



You can also  read or  download a guide explaining the meaning of all files and numerical data.