Orange: nodes, hubs and links specific of tachykinin_off network

Green: nodes, hubs and links shared by both networks

Purple: nodes, hubs and links specific of tachykinin_on network

Index: hub id, click on each number to highlight the corresponding hub in the 3D visualization.

Hub: the hub being considered.

Owner: the name of the network the hub belong to or "Shared" if the corresponding hub is present in both networks.

Avg Int. Strength: the average interaction strength of all the links of the corresponding hub in the corresponding network.

Num Of Links: the number of links of the corresponding hub in the corresponding network.

ConSurf: this column reports the ConSurf conservation grades of each hub.


Index Hub Owner tachykinin_off Avg Int. Strength tachykinin_on Avg Int. Strength tachykinin_off Num Of Links tachykinin_on Num Of Links ConSurf
11x45 tachykinin_off00424
21x50 tachykinin_off7533.3333539
3I1x50 tachykinin_off250437
42x41 tachykinin_off250435
53x51 tachykinin_off7566.6667538
64x50 tachykinin_off2533.3333439
7E2x52 tachykinin_off500524
85x43 tachykinin_off7533.3333425
95x461 tachykinin_off250436
106x40 tachykinin_off250417
116x52 tachykinin_off7566.6667437
12CT tachykinin_off250405
13Lig Shared10010013220
141x35 Shared066.6667444
151x55 Shared250454
162x42 Shared100100557
172x50 Shared100100459
182x57 Shared7566.6667456
19E1x50 Shared7566.6667858
203x29 Shared2533.3333455
213x33 Shared7566.6667455
223x37 Shared066.6667447
233x55 Shared066.6667447
24I2 Shared100100776
254x61 Shared10033.3333556
26E2 Shared10010013153
275x39 Shared7566.6667456
285x47 Shared10066.6667448
296x48 Shared75100668
306x51 Shared75100467
316x54 Shared0100464
32E3 Shared25100583
337x39 Shared750545
347x53 Shared10033.3333549
358x50 Shared7533.3333549
36NT tachykinin_on2566.66672104
371x31 tachykinin_on00342
381x39 tachykinin_on5066.6667347
392x40 tachykinin_on033.3333348
402x53 tachykinin_on50100257
412x56 tachykinin_on033.3333245
422x61 tachykinin_on25100156
432x62 tachykinin_on250346
442x64 tachykinin_on0100144
452x68 tachykinin_on033.3333144
463x24 tachykinin_on2533.3333345
473x28 tachykinin_on2566.6667365
483x31 tachykinin_on25100254
494x42 tachykinin_on066.6667347
504x46 tachykinin_on00248
514x65 tachykinin_on033.3333245
52E2x51 tachykinin_on033.3333154
535x58 tachykinin_on2533.3333349
545x65 tachykinin_on00348
556x44 tachykinin_on033.3333249
566x55 tachykinin_on2566.6667346
577x34 tachykinin_on066.6667345
587x35 tachykinin_on033.3333143
597x38 tachykinin_on7566.6667255
607x47 tachykinin_on00247
618x48 tachykinin_on033.3333244
628x49 tachykinin_on00356
   
Orange: nodes, hubs and links specific of tachykinin_off network

Green: nodes, hubs and links shared by both networks

Purple: nodes, hubs and links specific of tachykinin_on network

Index: link id, click on each number to highlight the corresponding link in the 3D visualization.

Node1 Node2: the two nodes of the corresponding link.

Owner: the name of the network the link belong to or "Shared" if the corresponding link is present in both networks.

Recurrence: the relative Recurrence in the filtered pool of shortest paths.

Hub1?, Hub2?: "Yes" if the corresponding node has more than 3 links, otherwise "No".

ConSurf1, ConSurf2: these columns report the ConSurf conservation grades of the two nodes involved in a link.


Index Node1 Node2 Owner tachykinin_off Recurrence tachykinin_on Recurrence tachykinin_off Hub1? tachykinin_on Hub1? tachykinin_off Hub2? tachykinin_on Hub2? ConSurf1 ConSurf2
13x32 Lig tachykinin_off10.86330NoNoYesYes60
2E2x52 Lig tachykinin_off29.12080YesNoYesYes40
35x461 Lig tachykinin_off14.74240YesNoYesYes60
46x48 Lig tachykinin_off11.95550YesYesYesYes80
56x55 Lig tachykinin_off90.12010.653587NoYesYesYes60
61x35 7x39 tachykinin_off12.15220YesYesYesYes45
71x39 7x38 tachykinin_off99.98740NoYesNoYes75
86x54 7x34 tachykinin_off99.74892.28208YesYesNoYes45
96x54 6x55 tachykinin_off98.80320.150921YesYesNoYes46
107x43 7x48 tachykinin_off98.17552.89672NoNoNoNo55
117x39 7x43 tachykinin_off98.35540YesYesNoNo55
126x40 7x49 tachykinin_off62.32580YesNoNoNo79
136x40 7x52 tachykinin_off95.64381.81471YesNoNoNo78
146x43 7x52 tachykinin_off96.17940NoNoNoNo68
156x43 7x48 tachykinin_off96.43475.79222NoNoNoNo65
161x56 8x54 tachykinin_off11.22740NoNoNoNo86
171x56 8x50 tachykinin_off13.68795.80804NoNoYesYes89
188x50 I1x50 tachykinin_off16.75520YesYesYesNo97
196x37 6x40 tachykinin_off62.32580NoNoYesNo87
203x47 5x58 tachykinin_off58.55551.81592NoNoNoYes99
213x47 5x57 tachykinin_off55.10730NoNoNoNo97
223x51 5x57 tachykinin_off54.22440.912831YesNoNoNo87
233x51 3x56 tachykinin_off35.07140YesNoNoNo86
243x56 I2 tachykinin_off35.97527.56311NoNoYesYes66
253x49 I2 tachykinin_off27.4475.40274NoNoYesYes96
262x38 3x49 tachykinin_off25.30860NoNoNoNo69
272x38 4x42 tachykinin_off24.39221.09661NoNoNoYes67
282x42 4x42 tachykinin_off16.21126.99593YesYesNoYes77
29E1x50 E2 tachykinin_off19.91460YesYesYesYes83
30E2 E2x52 tachykinin_off25.80240.264112YesYesYesNo34
315x36 E2 tachykinin_off24.87763.12188NoNoYesYes43
325x36 Lig tachykinin_off26.43430NoNoYesYes40
333x37 5x461 tachykinin_off13.34063.7353YesYesYesNo76
343x51 3x55 tachykinin_off16.42471.81958YesNoYesYes87
353x54 3x55 tachykinin_off16.01870NoNoYesYes87
365x31 E2 tachykinin_off10.81310NoNoYesYes13
371x39 7x39 Shared99.807540.2327NoYesYesYes75
387x34 7x38 Shared10020.322NoYesNoYes55
391x50 2x50 Shared10.097514.5164YesNoYesYes99
402x50 7x49 Shared16.261599.8819YesYesNoNo99
417x53 8x50 Shared40.251919.492YesYesYesYes99
427x49 7x53 Shared50.2281100NoNoYesYes99
431x60 I1x50 Shared11.248313.4478NoNoYesNo57
445x58 6x37 Shared60.861242.5623NoYesNoNo98
452x42 4x46 Shared10.172813.9383YesYesNoYes78
463x54 5x65 Shared11.181327.0685NoNoNoYes88
471x32 NT tachykinin_on010.926NoNoNoYes34
481x35 7x32 tachykinin_on053.8777YesYesNoNo41
497x32 NT tachykinin_on2.3308429.1729NoNoNoYes14
501x35 1x39 tachykinin_on042.8422YesYesNoYes47
511x42 7x39 tachykinin_on1.2972325.8769NoNoYesYes75
521x42 7x47 tachykinin_on022.9985NoNoNoYes77
532x53 7x46 tachykinin_on060.8128NoYesNoNo79
542x53 3x36 tachykinin_on047.2335NoYesNoNo77
553x36 3x37 tachykinin_on024.0513NoNoYesYes77
563x33 3x37 tachykinin_on022.2804YesYesYesYes57
573x33 Lig tachykinin_on8.1976820.316YesYesYesYes50
58Lig NT tachykinin_on046.3402YesYesNoYes04
593x36 6x48 tachykinin_on2.0923124.246NoNoYesYes78
606x48 6x51 tachykinin_on7.0678322.7477YesYesYesYes87
616x51 Lig tachykinin_on0.84529440.4871YesYesYesYes70
622x53 7x42 tachykinin_on075.1077NoYesNoNo77
637x38 7x42 tachykinin_on076.7812NoYesNoNo57
646x51 7x38 tachykinin_on021.1655YesYesNoYes75
652x57 7x38 tachykinin_on019.7524YesYesNoYes65
662x57 Lig tachykinin_on026.505YesYesYesYes60
672x61 7x38 tachykinin_on018.3418NoYesNoYes65
682x61 Lig tachykinin_on017.8562NoYesYesYes60
697x34 Lig tachykinin_on018.0838NoYesYesYes50
702x50 3x39 tachykinin_on1.2972358.5514YesYesNoNo99
712x53 3x39 tachykinin_on059.9657NoYesNoNo79
722x50 7x46 tachykinin_on3.7996458.6914YesYesNoNo99
731x55 1x60 tachykinin_on9.9845211.6088YesYesNoNo45
742x40 I1x50 tachykinin_on2.8162515.5838NoYesYesNo87
752x40 2x43 tachykinin_on026.0534NoYesNoNo88
762x43 7x53 tachykinin_on1.2679427.3241NoNoYesYes89
772x45 4x46 tachykinin_on8.9299917.6602NoNoNoYes98
782x45 4x50 tachykinin_on6.4192218.1471NoNoYesNo99
793x31 4x50 tachykinin_on018.64NoYesYesNo49
803x31 3x32 tachykinin_on018.9114NoYesNoNo46
812x57 3x32 tachykinin_on9.6664910.1324YesYesNoNo66
828x47 8x50 tachykinin_on4.1469610.5718NoNoYesYes89
834x63 4x64 tachykinin_on2.3015410.2395NoNoNoNo45
844x64 E2 tachykinin_on4.2641311.2826NoNoYesYes53
853x50 5x58 tachykinin_on053.9483NoNoNoYes99
863x50 7x53 tachykinin_on056.5894NoNoYesYes99
873x54 5x61 tachykinin_on3.8498628.8479NoNoNoNo88
885x61 6x37 tachykinin_on030.6212NoNoNoNo88
895x65 6x34 tachykinin_on014.4605NoYesNoNo86
905x66 6x34 tachykinin_on010.8651NoNoNoNo46
916x36 6x37 tachykinin_on010.8432NoNoNoNo88
927x47 7x48 tachykinin_on8.9299911.5759NoYesNoNo75
93E2 Lig tachykinin_on024.6099YesYesYesYes30
947x31 7x32 tachykinin_on027.5529NoNoNoNo41
957x31 Lig tachykinin_on028.6166NoNoYesYes40

Here, those paths that begin and end at given residue pair(s) or that pass through a residue are used to generate a novel metapath. Such a path filtering is particularly recommended if some information on allosteric residues is available. The selection syntax for a residue pair ("Pairs") is C:C:c534,A:A:?600 (the lower-case "c" stands for cytosine and "?" indicates any non standard amino acid or nucleotide residue). Selection of more than one apical residue pair has the following syntax: C:C:c534,A:A:?600,C:C:c534,A:A:E41. Only one residue can be selected as a tail ("Tail"). For midway residue(s), each residue must be separated by a comma as well e.g. A:A:?600,A:A:E41.

Midway



Download PSN data

2D representation of the global metapath, ligand(s) interactions and
histograms of path distribution according to several parameters
(click on the image to enlarge it 🔍):

A 2D representation of the global communication in the network.

Number of shortest communication paths as a function of the average residue correlation.

Number of shortest communication paths as a function of the average interaction strength of their links.

Number of shortest communication paths as a function of the % of hub nodes in each path.

Number of shortest communication paths as a function of the number of nodes in each path.

Number of shortest communication paths as a function of the % of correlated nodes in each path.


2D representation of the interactions of this orthosteric/allosteric ligand.


Node1Node2OwnerNet1LinkStrengthNet2LinkStrengthComm1Comm2Node1ShellNode2Shell
3x32Ligtachykinin_off10.9700110
3x33LigShared7.37258.391110
4x61LigShared16.567.251110
E2x52Ligtachykinin_off3.99501110
5x40Ligtachykinin_off16.342500010
5x43Ligtachykinin_off3.877501010
5x461Ligtachykinin_off4.9901010
6x48Ligtachykinin_off5.707501110
6x51LigShared18.088.073331110
6x52Ligtachykinin_off5.637501010
6x55LigShared17.6710.45331110
7x42Ligtachykinin_off3.81500010
2x532x57tachykinin_off3.857500021
2x573x27tachykinin_off6.342505112
2x573x31tachykinin_off6.947505112
2x573x32Shared7.7355.976675111
2x587x42Shared7.9055.016670021
2x603x24Shared9.4658.556670122
2x613x28Shared8.9258.650111
2x64E1x50Shared10.618.683330112
2x67E1x49Shared7.6953.281022
E1x49E2tachykinin_off9.887501021
3x24E1x50tachykinin_off4.342500122
3x25E1x50tachykinin_off4.5701122
3x28E1x50tachykinin_off8.202500112
E1x50E2tachykinin_off3.96501021
E1x50E2x50Shared11.10255.223331021
3x22E2Shared5.89755.051121
3x25E2x50tachykinin_off7.2801121
3x273x31Shared14.478.216675122
3x283x29tachykinin_off6.377500111
3x294x61Shared5.284.841111
3x294x65Shared6.33255.463331112
3x29E2x52tachykinin_off9.20501111
3x334x61Shared5.14754.116671111
3x335x43tachykinin_off4.6101111
3x365x461tachykinin_off4.847500021
3x366x48Shared6.54.80021
3x373x41tachykinin_off18.3100022
3x375x461Shared3.7711.850021
3x406x44Shared11.30256.70122
4x565x43tachykinin_off3.72500021
4x61E2x52Shared6.51754.673331111
4x615x39Shared9.589.021112
4x64E2Shared15.822510.31121
4x65E2x52tachykinin_off4.257501121
E2E2Shared43.63538.57671111
E2E2x51tachykinin_off9.902501111
E2E2x52Shared6.75255.873331111
5x36E2Shared18.30516.05671111
5x39E2Shared6.277.393331121
5x31E2tachykinin_off4.577501021
5x35E2Shared6.40756.013330121
5x335x36Shared7.08754.050021
5x395x43Shared6.62256.731121
5x406x56tachykinin_off5.14500012
5x406x59Shared7.62255.080012
5x446x52Shared9.248.966670021
5x446x56Shared3.68253.440022
5x4616x52tachykinin_off4.307501011
5x476x52Shared7.62254.356670021
6x446x48Shared9.778.686670121
6x486x51Shared8.76757.533331111
6x487x41Shared5.8356.483331112
6x487x45Shared7.10255.763331112
6x516x55Shared8.842510.121111
6x517x41Shared4.50754.946671112
6x546x55Shared8.84257.696670111
6x547x34Shared8.252512.690111
6x547x37Shared3.7653.360112
6x576x58tachykinin_off4.10500022
6x61E3Shared6.363.653330121
7x297x32tachykinin_off10.2500022
7x347x38Shared7.782511.90112
5x36Ligtachykinin_off4.3101110
E3E3Shared6.749.276111
1x31NTShared3.524.896673121
7x30E3tachykinin_off3.48506111
6x58E3Shared3.25259.936021
3x334x57Shared3.253.251112
5x315x34tachykinin_off2.962501022
2x68E2Shared2.856.963330111
7x337x37tachykinin_off2.687500022
7x32NTShared2.563.466670121
2x657x34tachykinin_off1.667500021
6x547x30Shared1.576.910111
2x677x31tachykinin_off1.54501021
NTNTtachykinin_on014.15670111
2x68NTtachykinin_on04.183330111
E2NTtachykinin_on07.361111
7x28NTtachykinin_on08.550111
LigNTtachykinin_on09.383331101
7x31NTtachykinin_on012.890111
1x32NTtachykinin_on06.013330121
2x533x36tachykinin_on04.003330022
2x537x42tachykinin_on03.850021
2x572x61tachykinin_on04.543335111
2x573x28tachykinin_on03.416675111
2x577x38tachykinin_on04.225112
2x57Ligtachykinin_on03.45110
2x603x28tachykinin_on010.140121
2x617x34tachykinin_on04.266670111
2x617x38tachykinin_on03.480112
2x61Ligtachykinin_on05.710110
2x642x68tachykinin_on03.60111
2x64E2tachykinin_on08.753330111
2x64Ligtachykinin_on08.540110
2x68Ligtachykinin_on05.713330110
3x243x27tachykinin_on07.606670122
3x254x65tachykinin_on03.441122
3x25E2tachykinin_on06.211121
3x283x32tachykinin_on06.716670111
3x28Ligtachykinin_on04.276670110
3x293x33tachykinin_on03.306671111
3x29Ligtachykinin_on05.493331110
3x313x32tachykinin_on03.855121
3x333x37tachykinin_on04.603331112
3x363x37tachykinin_on04.670022
3x374x56tachykinin_on06.903330022
3x406x48tachykinin_on08.220121
E2E2x50tachykinin_on04.333331111
E2Ligtachykinin_on018.60671110
E2x50Ligtachykinin_on03.216671110
E2x51Ligtachykinin_on09.40110
5x34E2tachykinin_on03.326670121
5x366x59tachykinin_on05.671112
5x395x40tachykinin_on07.983331121
5x406x55tachykinin_on06.786670011
5x435x461tachykinin_on04.141011
6x516x52tachykinin_on07.331111
6x517x38tachykinin_on03.926671112
6x54E3tachykinin_on06.853330111
6x54Ligtachykinin_on03.763330110
7x29E3tachykinin_on09.033330021
E3Ligtachykinin_on08.496676110
7x30Ligtachykinin_on04.186676110
7x317x32tachykinin_on04.266670112
7x31Ligtachykinin_on04.683330110
7x34Ligtachykinin_on011.890110
7x387x42tachykinin_on07.730121
3x243x28tachykinin_on04.236670121
7x28Ligtachykinin_on05.993330110
E1x50E2x51tachykinin_on04.011021
3x25E2x51tachykinin_on04.656671121
3x29E2x51tachykinin_on05.236671111
4x65E2x51tachykinin_on03.523331121
5x315x35tachykinin_on02.973331022
3x415x461tachykinin_on02.876670021
7x307x33tachykinin_on02.046676112
6x57E3tachykinin_on01.826670021

Location and physicochemical properties of the interaction partners of this ligand

Interactions of this ligand

Difference Members
Id Description
tachykinin_off nk1_off
tachykinin_on nk1_on
nk2_on
nk3_on
Network Difference
Value tachykinin_off tachykinin_on
Imin 3.6525 3.15667
Number of Linked Nodes 255 256
Number of Specific Nodes 5 (1.96%) 6  (2.34%)
Number of Shared Nodes 250 (98.04%) 250  (97.66%)
Number of Links 287 323
Number of Specific Links 119 (41.46%) 155  (47.99%)
Number of Shared Links 168 (58.54%) 168  (52.01%)
Number of Hubs 35 50
Number of Specific Hubs 12 (34.29%) 27  (54.00%)
Number of Shared Hubs 23 (65.71%) 23  (46.00%)
Average % Shared Neighbours (Jaccard) 43.72
Average % Shared Neighbours (Otsuka) 53.82
Average % Shared Neighbours (Overlap Coefficient) 63.53
Average % Shared Cliques (k3-6) 51.79
Graphlets Similarity 0.638417
Paths Difference
Value tachykinin_off tachykinin_on
Number Of Nodes in MetaPath 46 53
Specific Nodes in MetaPath 22 (47.83%) 29  (54.72%)
Shared Nodes in MetaPath 250 (98.04%) 250  (98.04%)
Number Of Links MetaPath 46 59
Specific Links in MetaPath 36 (78.26%) 49  (83.05%)
Shared Links in MetaPath 168 (58.54%) 168  (58.54%)
Number of Shortest Paths 44557 140356
Length Of Smallest Path 3 3
Average Path Length 15.6255 15.2864
Length of Longest Path 34 30
Minimum Path Strength 0.37375 0.511667
Average Path Strength 6.89275 5.81707
Maximum Path Strength 17.2113 17.3317
Minimum Path Correlation 0.7 0.7
Average Path Correlation 0.916019 0.910016
Maximum Path Correlation 0.99 0.99
Minimum % Of Corr. Nodes 3.57143 4.16667
Average % Of Corr. Nodes 38.2344 39.0509
Maximum % Of Corr. Nodes 100 100
Minimum Path Hubs % 0 0
Average Path Hubs % 35.7276 50.4211
Maximum Path Hubs % 100 100

Details about the values in these tables can be found in the corresponding documentation page .

You can download a compressed (zip) file with structure(s), 3D outputs (as PyMol and VMD scripts) and numerical data files (as csv and plain text files).

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