Code64Z
NameGeraniol
Synonyms2-trans-3,7-Dimethyl-2,6-octadien-1-ol
Identifier(2~{E})-3,7-dimethylocta-2,6-dien-1-ol
FormulaC10 H18 O
Molecular Weight154.249
SMILESCC(=CCC/C(=C/CO)/C)C
PubChem637566
Formal Charge0
Total Atoms29
Total Chiral Atoms0
Total Bonds28
Total Aromatic Bonds0
Networks1
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This ligand is also present in the following network:
Show PDB Class SubFamily Type SubType Species Orthosteric Ligand Other Ligand(s) Protein Partners Resolution Date DOI
6PGS A Sensory Opsins Rhodopsin Bos taurus - Geraniol Gt(CT) 2.9 2020-07-01 To be published

A 2D representation of the interactions of 64Z in 6PGS
colored according to ConSurf Conservation Grade (See documentation): 

 n/a   1    2    3    4    5    6    7    8    9  

(Click to enlarge 🔍)
Node1 Node2 LinkStrength Comm IsNode1Hub? IsNode2Hub? Node1Cons Node2Cons Node1Shell Node2Shell
R:R:C167 R:R:E122 9.12 1 No No 5 6 2 1
R:R:E122 R:R:H211 3.69 1 No Yes 6 6 1 2
R:R:E122 W:W:?3 5.08 1 No Yes 6 0 1 0
R:R:C167 R:R:M207 4.86 1 No Yes 5 5 2 1
R:R:C167 R:R:H211 8.85 1 No Yes 5 6 2 2
R:R:Y191 R:R:Y192 16.88 1 Yes Yes 6 5 1 2
R:R:Y191 R:R:Y268 5.96 1 Yes Yes 6 6 1 1
R:R:A272 R:R:Y191 5.34 1 No Yes 5 6 1 1
R:R:I275 R:R:Y191 6.04 1 No Yes 4 6 2 1
R:R:Y191 W:W:?3 5.61 1 Yes Yes 6 0 1 0
R:R:F203 R:R:M207 8.71 1 Yes Yes 6 5 2 1
R:R:H211 R:R:M207 3.94 1 Yes Yes 6 5 2 1
R:R:M207 W:W:?3 6.77 1 Yes Yes 5 0 1 0
R:R:F208 R:R:F212 5.36 1 No Yes 5 8 1 1
R:R:F208 R:R:I213 7.54 1 No No 5 4 1 2
R:R:F208 W:W:?3 3.5 1 No Yes 5 0 1 0
R:R:F212 R:R:I213 3.77 1 Yes No 8 4 1 2
R:R:A269 R:R:F212 8.32 1 No Yes 7 8 1 1
R:R:F212 W:W:?3 14 1 Yes Yes 8 0 1 0
R:R:P291 R:R:Y268 6.95 0 No Yes 6 6 2 1
R:R:Y268 W:W:?3 8.98 1 Yes Yes 6 0 1 0
R:R:A269 W:W:?3 4.53 1 No Yes 7 0 1 0
R:R:A272 W:W:?3 4.53 1 No Yes 5 0 1 0
R:R:A269 R:R:G270 1.95 1 No No 7 5 1 2
R:R:A295 R:R:Y268 1.33 0 No Yes 8 6 2 1
StatisticsValue
Average Number Of Links8.00
Average Number Of Links With An Hub4.00
Average Interaction Strength6.62
Average Nodes In Shell18.00
Average Hubs In Shell8.00
Average Links In Shell25.00
Average Links Mediated by Hubs In Shell22.00
Physico-chemical properties of the nodes interacting with this ligand (click to enlarge 🔍)
Location of the nodes interacting with this ligand (click to enlarge 🔍)
StatisticsValue
Average Number Of Links8.00
Average Number Of Links With An Hub4.00
Average Interaction Strength6.62
Average Nodes In Shell18.00
Average Hubs In Shell8.00
Average Links In Shell25.00
Average Links Mediated by Hubs In Shell22.00

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Physico-chemical properties of the nodes interacting with this ligand

(Click to enlarge 🔍)

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Location of the nodes interacting with this ligand

(Click to enlarge 🔍)