| Show | PDB | Class | SubFamily | Type | SubType | Species | Orthosteric Ligand | Other Ligand(s) | Protein Partners | Resolution | Date | DOI |
| 4J4Q | A | Sensory | Opsins | Rhodopsin | Bos taurus | Octyl Beta-D-Glucopyranoside | - | Gt(CT) | 2.65 | 2013-10-30 | 10.1002/anie.201302374 |
|
A 2D representation of the interactions of BOG in 4J4Q
colored according to ConSurf Conservation Grade (See documentation):
(Click to enlarge 🔍) | | Node1 | Node2 | LinkStrength | Comm | IsNode1Hub? | IsNode2Hub? | Node1Cons | Node2Cons | Node1Shell | Node2Shell | | R:R:F91 | R:R:K296 | 8.69 | 0 | Yes | No | 7 | 7 | 2 | 1 | | R:R:T118 | R:R:Y178 | 9.99 | 0 | No | No | 4 | 3 | 1 | 2 | | L:L:?405 | R:R:T118 | 10.06 | 1 | Yes | No | 0 | 4 | 0 | 1 | | R:R:C167 | R:R:M207 | 4.86 | 1 | No | Yes | 5 | 5 | 2 | 1 | | R:R:C167 | R:R:H211 | 11.79 | 1 | No | Yes | 5 | 6 | 2 | 2 | | R:R:E181 | R:R:Y268 | 4.49 | 0 | No | Yes | 4 | 6 | 2 | 1 | | L:L:?405 | R:R:G188 | 5.84 | 1 | Yes | No | 0 | 5 | 0 | 1 | | R:R:F203 | R:R:I189 | 6.28 | 1 | Yes | No | 6 | 4 | 2 | 1 | | L:L:?405 | R:R:I189 | 4.87 | 1 | Yes | No | 0 | 4 | 0 | 1 | | R:R:Y191 | R:R:Y192 | 10.92 | 1 | Yes | Yes | 6 | 5 | 1 | 2 | | R:R:Y191 | R:R:Y268 | 5.96 | 1 | Yes | Yes | 6 | 6 | 1 | 1 | | R:R:V271 | R:R:Y191 | 3.79 | 0 | No | Yes | 5 | 6 | 2 | 1 | | R:R:M288 | R:R:Y191 | 5.99 | 1 | No | Yes | 4 | 6 | 2 | 1 | | L:L:?405 | R:R:Y191 | 10 | 1 | Yes | Yes | 0 | 6 | 0 | 1 | | R:R:M288 | R:R:Y192 | 8.38 | 1 | No | Yes | 4 | 5 | 2 | 2 | | R:R:F203 | R:R:M207 | 6.22 | 1 | Yes | Yes | 6 | 5 | 2 | 1 | | R:R:H211 | R:R:M207 | 3.94 | 1 | Yes | Yes | 6 | 5 | 2 | 1 | | L:L:?405 | R:R:M207 | 7.24 | 1 | Yes | Yes | 0 | 5 | 0 | 1 | | R:R:F208 | R:R:F212 | 5.36 | 1 | No | Yes | 5 | 8 | 2 | 1 | | R:R:F208 | R:R:I213 | 6.28 | 1 | No | No | 5 | 4 | 2 | 2 | | R:R:F212 | R:R:I213 | 3.77 | 1 | Yes | No | 8 | 4 | 1 | 2 | | R:R:A269 | R:R:F212 | 8.32 | 0 | No | Yes | 7 | 8 | 2 | 1 | | L:L:?405 | R:R:F212 | 4.16 | 1 | Yes | Yes | 0 | 8 | 0 | 1 | | R:R:P291 | R:R:Y268 | 12.52 | 0 | No | Yes | 6 | 6 | 2 | 1 | | L:L:?405 | R:R:Y268 | 34 | 1 | Yes | Yes | 0 | 6 | 0 | 1 | | L:L:?405 | R:R:A272 | 4.03 | 1 | Yes | No | 0 | 5 | 0 | 1 | | L:L:?405 | R:R:K296 | 6.01 | 1 | Yes | No | 0 | 7 | 0 | 1 | | R:R:A168 | R:R:T118 | 3.36 | 0 | No | No | 7 | 4 | 2 | 1 | | L:L:?405 | R:R:A117 | 2.69 | 1 | Yes | No | 0 | 5 | 0 | 1 | | L:L:?405 | R:R:A295 | 2.69 | 1 | Yes | No | 0 | 8 | 0 | 1 | | R:R:A292 | R:R:Y268 | 2.67 | 0 | No | Yes | 5 | 6 | 2 | 1 | | R:R:V204 | R:R:Y191 | 2.52 | 0 | No | Yes | 4 | 6 | 2 | 1 | | R:R:A117 | R:R:G90 | 1.95 | 0 | No | No | 5 | 6 | 1 | 2 | |
| Statistics | Value |
|---|
| Average Number Of Links | 11.00 | | Average Number Of Links With An Hub | 4.00 | | Average Interaction Strength | 8.33 | | Average Nodes In Shell | 29.00 | | Average Hubs In Shell | 9.00 | | Average Links In Shell | 33.00 | | Average Links Mediated by Hubs In Shell | 29.00 |
| 
Physico-chemical properties of the nodes interacting with this ligand (click to enlarge 🔍) | 
Location of the nodes interacting with this ligand (click to enlarge 🔍) |
|
| Show | PDB | Class | SubFamily | Type | SubType | Species | Orthosteric Ligand | Other Ligand(s) | Protein Partners | Resolution | Date | DOI |
| 5TE3 | A | Sensory | Opsins | Rhodopsin | Bos taurus | Octyl Beta-D-Glucopyranoside | - | - | 2.7 | 2017-03-15 | 10.1073/pnas.1617446114 |
|
A 2D representation of the interactions of BOG in 5TE3
colored according to ConSurf Conservation Grade (See documentation):
(Click to enlarge 🔍) | | Node1 | Node2 | LinkStrength | Comm | IsNode1Hub? | IsNode2Hub? | Node1Cons | Node2Cons | Node1Shell | Node2Shell | | R:R:T118 | R:R:Y178 | 9.99 | 0 | No | Yes | 4 | 3 | 1 | 2 | | L:L:?1 | R:R:T118 | 7.54 | 1 | Yes | No | 0 | 4 | 0 | 1 | | R:R:L125 | R:R:W265 | 15.94 | 0 | No | Yes | 7 | 8 | 2 | 1 | | R:R:C167 | R:R:M207 | 4.86 | 1 | No | Yes | 5 | 5 | 2 | 1 | | R:R:C167 | R:R:H211 | 11.79 | 1 | No | Yes | 5 | 6 | 2 | 2 | | L:L:?1 | R:R:G188 | 4.38 | 1 | Yes | No | 0 | 5 | 0 | 1 | | R:R:F203 | R:R:I189 | 6.28 | 1 | Yes | No | 6 | 4 | 2 | 1 | | L:L:?1 | R:R:I189 | 10.96 | 1 | Yes | No | 0 | 4 | 0 | 1 | | R:R:Y191 | R:R:Y192 | 8.94 | 1 | Yes | Yes | 6 | 5 | 1 | 2 | | R:R:Y191 | R:R:Y268 | 5.96 | 1 | Yes | Yes | 6 | 6 | 1 | 1 | | L:L:?1 | R:R:Y191 | 7 | 1 | Yes | Yes | 0 | 6 | 0 | 1 | | R:R:F203 | R:R:M207 | 7.46 | 1 | Yes | Yes | 6 | 5 | 2 | 1 | | R:R:H211 | R:R:M207 | 3.94 | 1 | Yes | Yes | 6 | 5 | 2 | 1 | | L:L:?1 | R:R:M207 | 9.65 | 1 | Yes | Yes | 0 | 5 | 0 | 1 | | R:R:F208 | R:R:F212 | 4.29 | 1 | No | Yes | 5 | 8 | 2 | 1 | | R:R:F208 | R:R:I213 | 6.28 | 1 | No | No | 5 | 4 | 2 | 2 | | R:R:F212 | R:R:I213 | 3.77 | 1 | Yes | No | 8 | 4 | 1 | 2 | | R:R:A269 | R:R:F212 | 8.32 | 1 | No | Yes | 7 | 8 | 1 | 1 | | L:L:?1 | R:R:F212 | 5.19 | 1 | Yes | Yes | 0 | 8 | 0 | 1 | | R:R:F261 | R:R:W265 | 4.01 | 0 | No | Yes | 9 | 8 | 2 | 1 | | R:R:C264 | R:R:W265 | 11.75 | 0 | No | Yes | 8 | 8 | 2 | 1 | | L:L:?1 | R:R:W265 | 6.8 | 1 | Yes | Yes | 0 | 8 | 0 | 1 | | R:R:P291 | R:R:Y268 | 5.56 | 0 | No | Yes | 6 | 6 | 2 | 1 | | L:L:?1 | R:R:Y268 | 20 | 1 | Yes | Yes | 0 | 6 | 0 | 1 | | L:L:?1 | R:R:A269 | 4.03 | 1 | Yes | No | 0 | 7 | 0 | 1 | | R:R:A168 | R:R:T118 | 3.36 | 0 | No | No | 7 | 4 | 2 | 1 | | L:L:?1 | R:R:A272 | 2.69 | 1 | Yes | No | 0 | 5 | 0 | 1 | | R:R:A295 | R:R:Y268 | 2.67 | 0 | No | Yes | 8 | 6 | 2 | 1 | | R:R:I275 | R:R:Y191 | 2.42 | 1 | No | Yes | 4 | 6 | 2 | 1 | | R:R:I275 | R:R:Y192 | 2.42 | 1 | No | Yes | 4 | 5 | 2 | 2 | | R:R:V204 | R:R:Y191 | 1.26 | 0 | No | Yes | 4 | 6 | 2 | 1 | |
| Statistics | Value |
|---|
| Average Number Of Links | 10.00 | | Average Number Of Links With An Hub | 5.00 | | Average Interaction Strength | 7.82 | | Average Nodes In Shell | 26.00 | | Average Hubs In Shell | 10.00 | | Average Links In Shell | 31.00 | | Average Links Mediated by Hubs In Shell | 29.00 |
| 
Physico-chemical properties of the nodes interacting with this ligand (click to enlarge 🔍) | 
Location of the nodes interacting with this ligand (click to enlarge 🔍) |
|
| Show | PDB | Class | SubFamily | Type | SubType | Species | Orthosteric Ligand | Other Ligand(s) | Protein Partners | Resolution | Date | DOI |
| 5WKT | A | Sensory | Opsins | Rhodopsin | Bos taurus | Octyl Beta-D-Glucopyranoside | - | Gt(CT) | 3.2 | 2017-12-13 | 10.1038/nprot.2017.135 |
|
A 2D representation of the interactions of BOG in 5WKT
colored according to ConSurf Conservation Grade (See documentation):
(Click to enlarge 🔍) | | Node1 | Node2 | LinkStrength | Comm | IsNode1Hub? | IsNode2Hub? | Node1Cons | Node2Cons | Node1Shell | Node2Shell | | R:R:T118 | R:R:Y178 | 9.99 | 0 | No | Yes | 4 | 3 | 1 | 2 | | L:L:?405 | R:R:T118 | 15.09 | 0 | Yes | No | 0 | 4 | 0 | 1 | | R:R:L125 | R:R:W265 | 7.97 | 0 | Yes | No | 7 | 8 | 2 | 1 | | R:R:C167 | R:R:M207 | 4.86 | 1 | No | Yes | 5 | 5 | 2 | 1 | | R:R:C167 | R:R:H211 | 7.37 | 1 | No | Yes | 5 | 6 | 2 | 2 | | R:R:P171 | R:R:Y178 | 15.3 | 1 | Yes | Yes | 5 | 3 | 2 | 2 | | R:R:I189 | R:R:P171 | 3.39 | 1 | No | Yes | 4 | 5 | 1 | 2 | | R:R:F203 | R:R:P171 | 7.22 | 1 | Yes | Yes | 6 | 5 | 2 | 2 | | R:R:F203 | R:R:I189 | 7.54 | 1 | Yes | No | 6 | 4 | 2 | 1 | | L:L:?405 | R:R:I189 | 7.3 | 0 | Yes | No | 0 | 4 | 0 | 1 | | R:R:Y191 | R:R:Y192 | 9.93 | 0 | No | Yes | 6 | 5 | 1 | 2 | | R:R:A272 | R:R:Y191 | 4 | 0 | No | No | 5 | 6 | 2 | 1 | | L:L:?405 | R:R:Y191 | 5 | 0 | Yes | No | 0 | 6 | 0 | 1 | | R:R:F203 | R:R:M207 | 7.46 | 1 | Yes | Yes | 6 | 5 | 2 | 1 | | R:R:H211 | R:R:M207 | 6.57 | 1 | Yes | Yes | 6 | 5 | 2 | 1 | | L:L:?405 | R:R:M207 | 12.06 | 0 | Yes | Yes | 0 | 5 | 0 | 1 | | R:R:C264 | R:R:W265 | 10.45 | 2 | Yes | No | 8 | 8 | 2 | 1 | | L:L:?405 | R:R:W265 | 6.8 | 0 | Yes | No | 0 | 8 | 0 | 1 | | R:R:P291 | R:R:Y268 | 5.56 | 0 | No | No | 6 | 6 | 2 | 1 | | L:L:?405 | R:R:Y268 | 28 | 0 | Yes | No | 0 | 6 | 0 | 1 | | R:R:A168 | R:R:T118 | 3.36 | 0 | No | No | 7 | 4 | 2 | 1 | | L:L:?405 | R:R:G188 | 2.92 | 0 | Yes | No | 0 | 5 | 0 | 1 | |
| Statistics | Value |
|---|
| Average Number Of Links | 7.00 | | Average Number Of Links With An Hub | 1.00 | | Average Interaction Strength | 11.02 | | Average Nodes In Shell | 19.00 | | Average Hubs In Shell | 9.00 | | Average Links In Shell | 22.00 | | Average Links Mediated by Hubs In Shell | 19.00 |
| 
Physico-chemical properties of the nodes interacting with this ligand (click to enlarge 🔍) | 
Location of the nodes interacting with this ligand (click to enlarge 🔍) |
|
| Show | PDB | Class | SubFamily | Type | SubType | Species | Orthosteric Ligand | Other Ligand(s) | Protein Partners | Resolution | Date | DOI |
| 6NWE | A | Sensory | Opsins | Rhodopsin | Bos taurus | Octyl Beta-D-Glucopyranoside | - | Gt(CT) | 2.71 | 2020-02-12 | To be published |
|
A 2D representation of the interactions of BOG in 6NWE
colored according to ConSurf Conservation Grade (See documentation):
(Click to enlarge 🔍) | | Node1 | Node2 | LinkStrength | Comm | IsNode1Hub? | IsNode2Hub? | Node1Cons | Node2Cons | Node1Shell | Node2Shell | | R:R:T118 | R:R:Y178 | 6.24 | 1 | Yes | Yes | 4 | 3 | 1 | 2 | | R:R:I189 | R:R:T118 | 4.56 | 1 | No | Yes | 4 | 4 | 1 | 1 | | L:L:?1 | R:R:T118 | 18.86 | 1 | Yes | Yes | 0 | 4 | 0 | 1 | | R:R:F261 | R:R:L125 | 3.65 | 1 | Yes | Yes | 9 | 7 | 2 | 2 | | R:R:L125 | R:R:W265 | 11.39 | 1 | Yes | Yes | 7 | 8 | 2 | 1 | | R:R:C167 | R:R:M207 | 4.86 | 1 | No | Yes | 5 | 5 | 2 | 1 | | R:R:C167 | R:R:H211 | 7.37 | 1 | No | Yes | 5 | 6 | 2 | 2 | | R:R:E181 | R:R:Y268 | 4.49 | 0 | No | Yes | 4 | 6 | 2 | 1 | | L:L:?1 | R:R:G188 | 5.84 | 1 | Yes | No | 0 | 5 | 0 | 1 | | R:R:F203 | R:R:I189 | 6.28 | 1 | Yes | No | 6 | 4 | 2 | 1 | | L:L:?1 | R:R:I189 | 9.74 | 1 | Yes | No | 0 | 4 | 0 | 1 | | R:R:Y191 | R:R:Y192 | 8.94 | 1 | Yes | Yes | 6 | 5 | 1 | 2 | | R:R:Y191 | R:R:Y268 | 5.96 | 1 | Yes | Yes | 6 | 6 | 1 | 1 | | R:R:M288 | R:R:Y191 | 5.99 | 1 | No | Yes | 4 | 6 | 2 | 1 | | L:L:?1 | R:R:Y191 | 7 | 1 | Yes | Yes | 0 | 6 | 0 | 1 | | R:R:M288 | R:R:Y192 | 8.38 | 1 | No | Yes | 4 | 5 | 2 | 2 | | R:R:F203 | R:R:M207 | 6.22 | 1 | Yes | Yes | 6 | 5 | 2 | 1 | | R:R:H211 | R:R:M207 | 3.94 | 1 | Yes | Yes | 6 | 5 | 2 | 1 | | L:L:?1 | R:R:M207 | 7.24 | 1 | Yes | Yes | 0 | 5 | 0 | 1 | | R:R:A269 | R:R:F212 | 8.32 | 0 | No | Yes | 7 | 8 | 1 | 2 | | R:R:F261 | R:R:W265 | 4.01 | 1 | Yes | Yes | 9 | 8 | 2 | 1 | | R:R:C264 | R:R:W265 | 10.45 | 1 | No | Yes | 8 | 8 | 2 | 1 | | L:L:?1 | R:R:W265 | 8.74 | 1 | Yes | Yes | 0 | 8 | 0 | 1 | | R:R:P291 | R:R:Y268 | 11.13 | 0 | No | Yes | 6 | 6 | 2 | 1 | | L:L:?1 | R:R:Y268 | 20 | 1 | Yes | Yes | 0 | 6 | 0 | 1 | | R:R:A168 | R:R:T118 | 3.36 | 0 | No | Yes | 7 | 4 | 2 | 1 | | L:L:?1 | R:R:A269 | 2.69 | 1 | Yes | No | 0 | 7 | 0 | 1 | | L:L:?1 | R:R:A272 | 2.69 | 1 | Yes | No | 0 | 5 | 0 | 1 | | R:R:A292 | R:R:Y268 | 2.67 | 0 | No | Yes | 5 | 6 | 2 | 1 | | R:R:A295 | R:R:Y268 | 2.67 | 0 | No | Yes | 8 | 6 | 2 | 1 | | R:R:V204 | R:R:Y191 | 2.52 | 0 | No | Yes | 4 | 6 | 2 | 1 | |
| Statistics | Value |
|---|
| Average Number Of Links | 9.00 | | Average Number Of Links With An Hub | 5.00 | | Average Interaction Strength | 9.20 | | Average Nodes In Shell | 26.00 | | Average Hubs In Shell | 13.00 | | Average Links In Shell | 31.00 | | Average Links Mediated by Hubs In Shell | 31.00 |
| 
Physico-chemical properties of the nodes interacting with this ligand (click to enlarge 🔍) | 
Location of the nodes interacting with this ligand (click to enlarge 🔍) |
|
