Color ConSurf Grade
      No Conservation data available
      1
      2
      3
      4
      5
      6
      7
      8
      9

Index: hub id, click on each number to highlight the corresponding hub in the 3D visualization.

Hub: the hub being considered.

Avg Int. Strength: the average interaction strength of all the links of the corresponding hub.

Num Of Links: the number of links of the corresponding hub.

Community: the id of the community the link belong to, otherwise 0.

ConSurf: this column reports the ConSurf conservation grades of each hub.

Index Hub Avg Int. Strength Num Of Links Community ConSurf
1S:S:V50 4.9325414
2S:S:F54 8.04404
3S:S:N66 4.988509
4S:S:L68 2.4525405
5S:S:V73 2.53408
6S:S:W94 3.4408
7S:S:D99 6.732519
8S:S:T107 8.0125408
9S:S:Y114 9.04418
10S:S:W120 5.55665
11S:S:D124 5.715406
12S:S:F133 4.982566
13S:S:L135 3.1525406
14S:S:R155 4.69499
15S:S:I159 2.254508
16S:S:M169 9.0025485
17S:S:W182 3.494107
18S:S:F188 5.474538
19S:S:Y199 7.936536
20S:S:V201 3.56465
21S:S:W203 8.696514
22S:S:T206 6.19833618
23S:S:W207 8.45286717
24S:S:C208 5.0275469
25S:S:N227 4.3275405
26S:S:F230 7.98333636
27S:S:F234 4.82438
28S:S:C248 2.21407
29S:S:I253 2.94406
30S:S:L284 6.4425409
31S:S:W295 7.29714718
32S:S:L298 3.5475407
33S:S:I306 6.208505
34S:S:F328 4.01667616
35S:S:L329 6.755417
36S:S:R333 9.505418
37S:S:N338 7.372519
38S:S:Q339 7.42167618
39S:S:D342 6.13419
40S:S:P343 4.282549
41S:S:W344 6.7075448
42S:S:Y346 4.98333699
43R:R:F54 8.04404
44R:R:N66 4.988509
45R:R:L68 2.558505
46R:R:V73 2.53408
47R:R:W94 2.9325408
48R:R:D99 7.31429
49R:R:T107 7.7575408
50R:R:Y114 9.04428
51R:R:W120 5.48286755
52R:R:D124 5.715406
53R:R:F133 5.23556
54R:R:L135 3.1525406
55R:R:R155 4.694139
56R:R:M169 9.00254125
57R:R:W182 3.02254147
58R:R:F188 5.93408
59R:R:Y199 6.58676
60R:R:V201 3.9175455
61R:R:Q202 6.57428
62R:R:W203 9.95404
63R:R:T206 6.6528
64R:R:W207 8.56571727
65R:R:C208 5.355459
66R:R:F230 7.98333676
67R:R:F234 4.5075408
68R:R:L284 6.085409
69R:R:L291 4.4075409
70R:R:W295 7.61667628
71R:R:I306 6.208505
72R:R:F328 4.225626
73R:R:L329 6.112527
74R:R:R333 9.0825428
75R:R:N338 7.68529
76R:R:Q339 7.08667628
77R:R:D342 6.4675429
78R:R:P343 4.5325449
79R:R:W344 6.1375448
80R:R:Y346 5.9545139
81M:M:?1 8.0081510
82L:L:?1 7.9761520
   

Color ConSurf Grade
      No Conservation data available
      1
      2
      3
      4
      5
      6
      7
      8
      9

Index: link id, click on each number to highlight the corresponding link in the 3D visualization.

Node1 Node2: the two nodes of the corresponding link.

Recurrence: the relative Recurrence in the pool of shortest paths.

Int. Strength: the interaction strength between the two nodes.

Hub1?, Hub2?: "Yes" if the corresponding node has more than 3 links, otherwise "No".

Community: the id of the community the link belong to, otherwise 0.

ConSurf1, ConSurf2: these columns report the ConSurf conservation grades of the two nodes involved in a link.

Index Node1 Node2 Recurrence Int. Strength Hub1? Hub2? Community ConSurf1 ConSurf2
1M:M:?1 S:S:R333 77.29915.05YesYes108
2S:S:F54 S:S:R333 10017.1YesYes048
3S:S:L329 S:S:R333 21.88412.15YesYes178
4R:R:F54 S:S:F54 99.54939.65YesYes044
5M:M:?1 S:S:Q339 23.31619.21YesYes108
6S:S:D99 S:S:Q339 18.098810.44YesYes198
7S:S:D99 S:S:N66 15.50265.39YesYes099
8S:S:N66 S:S:P343 15.78788.15YesYes099
9S:S:P343 S:S:W344 12.5164.05YesYes498
10S:S:D99 S:S:L95 14.14395.43YesNo099
11S:S:I147 S:S:L95 13.65478.56NoNo079
12S:S:I147 S:S:L178 12.67284.28NoNo077
13M:M:?1 S:S:W295 34.34393.15YesYes108
14S:S:N338 S:S:W295 17.54229.04YesYes198
15S:S:L291 S:S:N338 33.13186.87NoYes099
16S:S:F246 S:S:L291 31.82463.65NoNo059
17S:S:F246 S:S:M288 28.544612.44NoNo058
18S:S:M288 S:S:N249 27.22787.01NoNo089
19S:S:L284 S:S:N249 21.4419.61YesNo099
20S:S:N338 S:S:Q339 15.95697.92YesYes198
21S:S:F328 S:S:W207 45.03745.01YesYes167
22S:S:F328 S:S:L298 39.38783.65YesYes067
23S:S:L298 S:S:M302 63.02864.24YesNo077
24S:S:F234 S:S:M302 62.3463.73YesNo087
25S:S:F188 S:S:F234 22.03253.22YesYes388
26S:S:F188 S:S:F230 17.766412.86YesYes386
27S:S:F230 S:S:Y199 19.26773.09YesYes366
28S:S:L135 S:S:Y199 24.44063.52YesYes066
29S:S:L135 S:S:V139 17.75582.98YesNo067
30S:S:F140 S:S:V139 11.84173.93NoNo087
31M:M:?1 S:S:W207 24.164911.04YesYes107
32S:S:L329 S:S:W207 20.58324.56YesYes177
33S:S:A335 S:S:W295 29.05337.78NoYes088
34S:S:A335 S:S:L298 28.77583.15NoYes087
35S:S:F234 S:S:I210 37.45355.02YesNo086
36S:S:F230 S:S:I210 17.6548.79YesNo066
37S:S:I210 S:S:T138 19.13053.04NoNo067
38S:S:L284 S:S:T252 13.96942.95YesNo099
39S:S:I159 S:S:T252 13.24481.52YesNo089
40R:R:W344 S:S:W344 17.72683.75YesYes488
41L:L:?1 R:R:R333 87.00363.36YesYes208
42R:R:F54 R:R:R333 99.130517.1YesYes048
43R:R:L329 R:R:R333 10.380612.15YesYes278
44R:R:P343 R:R:W344 15.25544.05YesYes498
45R:R:D99 R:R:Q339 15.64410.44YesYes298
46L:L:?1 R:R:Q339 46.0728.29YesYes208
47R:R:I147 R:R:L178 15.20394.28NoNo077
48R:R:I147 R:R:L95 16.44028.56NoNo079
49R:R:D99 R:R:L95 17.05665.43YesNo099
50R:R:M288 R:R:N249 25.06117.01NoNo089
51R:R:F246 R:R:M288 26.143612.44NoNo058
52R:R:F246 R:R:L291 28.87943.65NoYes059
53R:R:L291 R:R:N338 34.81355.49YesYes099
54R:R:N338 R:R:Q339 32.83437.92YesYes298
55R:R:G134 R:R:Y199 25.09898.69NoYes076
56R:R:G134 R:R:M137 25.56033.49NoNo077
57L:L:?1 R:R:M137 34.688710.77YesNo007
58L:L:?1 R:R:T106 11.02785.1YesNo006
59R:R:F133 R:R:M137 10.36056.22YesNo067
60R:R:F133 R:R:W120 11.30994.01YesYes565
61R:R:F230 R:R:Y199 12.01863.09YesYes766
62R:R:L284 R:R:N249 19.40859.61YesNo099
63R:R:I159 R:R:T252 15.00871.52NoNo089
64R:R:L284 R:R:T252 15.61982.95YesNo099
65R:R:I159 R:R:P162 12.55271.69NoNo089
66R:R:F328 R:R:W207 12.29485.01YesYes267
67S:S:L135 S:S:L190 11.84171.38YesNo066
68R:R:N66 R:R:P343 15.37438.15YesYes099
Download PSN data

2D representation of the global metapath, ligand(s) interactions and
histograms of path distribution according to several parameters
(click on the image to enlarge it 🔍):

A 2D representation of the global communication in the network.

ConSurf Conservation Grade (See documentation): 

 n/a   1    2    3    4    5    6    7    8    9  

Number of shortest communication paths as a function of the average residue correlation.

Number of shortest communication paths as a function of the average interaction strength of their links.

Number of shortest communication paths as a function of the % of hub nodes in each path.

Number of shortest communication paths as a function of the number of nodes in each path.

Number of shortest communication paths as a function of the % of correlated nodes in each path.


2D representation of the interactions of this orthosteric/allosteric ligand.


Links and nodes colored according to ConSurf Conservation Grade (See documentation): 

 n/a   1    2    3    4    5    6    7    8    9  

Node1 Node2 LinkStrength Comm IsNode1Hub? IsNode2Hub? Node1Cons Node2Cons Node1Shell Node2Shell
S:S:V50 S:S:Y114 3.79 1 Yes Yes 4 8 2 1
S:S:V50 S:S:W203 3.68 1 Yes Yes 4 4 2 2
S:S:P204 S:S:V50 8.84 1 No Yes 7 4 2 2
S:S:I111 S:S:V52 4.61 0 No No 7 5 2 2
S:S:V52 S:S:Y114 10.09 0 No Yes 5 8 2 1
S:S:F54 S:S:R333 17.1 0 Yes Yes 4 8 2 1
S:S:P55 S:S:V110 3.53 1 No No 7 8 1 1
M:M:?1 S:S:P55 3.41 1 Yes No 0 7 0 1
S:S:M58 S:S:R333 3.72 1 No Yes 8 8 1 1
S:S:I340 S:S:M58 4.37 0 No No 9 8 2 1
M:M:?1 S:S:M58 8.81 1 Yes No 0 8 0 1
S:S:L59 S:S:T107 13.27 0 No Yes 7 8 2 1
S:S:D99 S:S:S144 4.42 1 Yes No 9 8 2 2
S:S:D99 S:S:Q339 10.44 1 Yes Yes 9 8 2 1
S:S:D342 S:S:D99 7.98 1 Yes Yes 9 9 2 2
S:S:F133 S:S:T106 6.49 6 Yes No 6 6 2 1
S:S:T106 S:S:T136 3.14 0 No No 6 5 1 2
M:M:?1 S:S:T106 5.1 1 Yes No 0 6 0 1
S:S:P108 S:S:T107 3.5 0 No Yes 8 8 2 1
S:S:I111 S:S:T107 3.04 0 No Yes 7 8 2 1
M:M:?1 S:S:T107 12.24 1 Yes Yes 0 8 0 1
S:S:T206 S:S:V110 3.17 1 Yes No 8 8 1 1
M:M:?1 S:S:V110 6.19 1 Yes No 0 8 0 1
S:S:T206 S:S:V113 4.76 1 Yes No 8 7 1 2
S:S:T206 S:S:Y114 14.98 1 Yes Yes 8 8 1 1
M:M:?1 S:S:Y114 7.3 1 Yes Yes 0 8 0 1
S:S:F133 S:S:M137 4.98 6 Yes No 6 7 2 1
M:M:?1 S:S:M137 9.79 1 Yes No 0 7 0 1
S:S:Q339 S:S:S144 8.66 1 Yes No 8 8 1 2
S:S:D342 S:S:S144 5.89 1 Yes No 9 8 2 2
S:S:L145 S:S:W295 20.5 0 No Yes 8 8 2 1
S:S:Q202 S:S:W207 16.43 1 No Yes 8 7 2 1
S:S:F209 S:S:Q202 3.51 1 No No 8 8 2 2
S:S:F328 S:S:Q202 3.51 1 Yes No 6 8 2 2
S:S:P204 S:S:W203 20.27 1 No Yes 7 4 2 2
S:S:L329 S:S:W203 4.56 1 Yes Yes 7 4 1 2
S:S:P204 S:S:T206 3.5 1 No Yes 7 8 2 1
S:S:T206 S:S:W207 3.64 1 Yes Yes 8 7 1 1
M:M:?1 S:S:T206 7.14 1 Yes Yes 0 8 0 1
S:S:F209 S:S:W207 5.01 1 No Yes 8 7 2 1
S:S:F328 S:S:W207 5.01 1 Yes Yes 6 7 2 1
S:S:L329 S:S:W207 4.56 1 Yes Yes 7 7 1 1
S:S:V332 S:S:W207 13.48 1 No Yes 7 7 1 1
M:M:?1 S:S:W207 11.04 1 Yes Yes 0 7 0 1
S:S:F209 S:S:F328 3.22 1 No Yes 8 6 2 2
S:S:L299 S:S:W295 3.42 0 No Yes 8 8 2 1
S:S:A335 S:S:W295 7.78 0 No Yes 8 8 2 1
S:S:N338 S:S:W295 9.04 1 Yes Yes 9 8 2 1
S:S:Q339 S:S:W295 4.38 1 Yes Yes 8 8 1 1
M:M:?1 S:S:W295 3.15 1 Yes Yes 0 8 0 1
S:S:L329 S:S:R333 12.15 1 Yes Yes 7 8 1 1
M:M:?1 S:S:L329 5.75 1 Yes Yes 0 7 0 1
M:M:?1 S:S:V332 6.19 1 Yes No 0 7 0 1
M:M:?1 S:S:R333 5.05 1 Yes Yes 0 8 0 1
M:M:?1 S:S:S336 19.75 1 Yes No 0 8 0 1
S:S:N338 S:S:Q339 7.92 1 Yes Yes 9 8 2 1
S:S:D342 S:S:N338 6.73 1 Yes Yes 9 9 2 2
S:S:D342 S:S:Q339 3.92 1 Yes Yes 9 8 2 1
M:M:?1 S:S:Q339 9.21 1 Yes Yes 0 8 0 1
S:S:G141 S:S:W295 2.81 0 No Yes 7 8 2 1

Location and physicochemical properties of the interaction partners of this ligand

Interactions of this ligand

Similarities between the interactions of this ligand and those of other networks

2D representation of the interactions of this orthosteric/allosteric ligand.


Links and nodes colored according to ConSurf Conservation Grade (See documentation): 

 n/a   1    2    3    4    5    6    7    8    9  

Node1 Node2 LinkStrength Comm IsNode1Hub? IsNode2Hub? Node1Cons Node2Cons Node1Shell Node2Shell
R:R:L329 R:R:S49 4.5 2 Yes No 7 4 1 2
R:R:V50 R:R:Y114 3.79 0 No Yes 4 8 2 1
R:R:P204 R:R:V50 8.84 0 No No 7 4 2 2
R:R:I111 R:R:V52 4.61 0 No No 7 5 2 2
R:R:V52 R:R:Y114 10.09 0 No Yes 5 8 2 1
R:R:F54 R:R:R333 17.1 0 Yes Yes 4 8 2 1
R:R:P55 R:R:V110 3.53 2 No No 7 8 1 1
L:L:?1 R:R:P55 3.41 2 Yes No 0 7 0 1
R:R:M58 R:R:R333 3.72 2 No Yes 8 8 1 1
R:R:I340 R:R:M58 4.37 0 No No 9 8 2 1
L:L:?1 R:R:M58 9.79 2 Yes No 0 8 0 1
R:R:L59 R:R:T107 13.27 0 No Yes 7 8 2 1
R:R:G62 R:R:Q103 4.93 0 No No 9 8 2 1
R:R:G62 R:R:I340 3.53 0 No No 9 9 2 2
R:R:D99 R:R:N66 5.39 2 Yes Yes 9 9 2 2
R:R:N66 R:R:Q103 3.96 0 Yes No 9 8 2 1
R:R:D99 R:R:Q339 10.44 2 Yes Yes 9 8 2 1
R:R:D342 R:R:D99 7.98 2 Yes Yes 9 9 2 2
L:L:?1 R:R:Q103 5.53 2 Yes No 0 8 0 1
R:R:F133 R:R:T106 6.49 5 Yes No 6 6 2 1
R:R:T106 R:R:T136 3.14 0 No No 6 5 1 2
L:L:?1 R:R:T106 5.1 2 Yes No 0 6 0 1
R:R:P108 R:R:T107 3.5 0 No Yes 8 8 2 1
R:R:I111 R:R:T107 3.04 0 No Yes 7 8 2 1
L:L:?1 R:R:T107 11.22 2 Yes Yes 0 8 0 1
L:L:?1 R:R:V110 6.19 2 Yes No 0 8 0 1
R:R:T206 R:R:V113 4.76 2 Yes No 8 7 1 2
R:R:T206 R:R:Y114 14.98 2 Yes Yes 8 8 1 1
L:L:?1 R:R:Y114 7.3 2 Yes Yes 0 8 0 1
R:R:F133 R:R:M137 6.22 5 Yes No 6 7 2 1
R:R:G134 R:R:M137 3.49 0 No No 7 7 2 1
L:L:?1 R:R:M137 10.77 2 Yes No 0 7 0 1
R:R:Q339 R:R:S144 8.66 2 Yes No 8 8 1 2
R:R:D342 R:R:S144 5.89 2 Yes No 9 8 2 2
R:R:Q202 R:R:W207 16.43 2 Yes Yes 8 7 2 1
R:R:F209 R:R:Q202 3.51 2 No Yes 8 8 2 2
R:R:F328 R:R:Q202 3.51 2 Yes Yes 6 8 2 2
R:R:P204 R:R:W203 20.27 0 No Yes 7 4 2 2
R:R:L329 R:R:W203 4.56 2 Yes Yes 7 4 1 2
R:R:P204 R:R:T206 3.5 0 No Yes 7 8 2 1
R:R:T206 R:R:W207 3.64 2 Yes Yes 8 7 1 1
L:L:?1 R:R:T206 6.12 2 Yes Yes 0 8 0 1
R:R:F209 R:R:W207 5.01 2 No Yes 8 7 2 1
R:R:F328 R:R:W207 5.01 2 Yes Yes 6 7 2 1
R:R:L329 R:R:W207 4.56 2 Yes Yes 7 7 1 1
R:R:V332 R:R:W207 13.48 2 No Yes 7 7 1 1
L:L:?1 R:R:W207 11.83 2 Yes Yes 0 7 0 1
R:R:F209 R:R:F328 3.22 2 No Yes 8 6 2 2
R:R:N338 R:R:W295 9.04 2 Yes Yes 9 8 2 2
R:R:Q339 R:R:W295 3.29 2 Yes Yes 8 8 1 2
R:R:L329 R:R:R333 12.15 2 Yes Yes 7 8 1 1
L:L:?1 R:R:L329 4.79 2 Yes Yes 0 7 0 1
L:L:?1 R:R:V332 6.19 2 Yes No 0 7 0 1
L:L:?1 R:R:R333 3.36 2 Yes Yes 0 8 0 1
L:L:?1 R:R:S336 19.75 2 Yes No 0 8 0 1
R:R:N338 R:R:Q339 7.92 2 Yes Yes 9 8 2 1
R:R:D342 R:R:N338 8.08 2 Yes Yes 9 9 2 2
R:R:D342 R:R:Q339 3.92 2 Yes Yes 9 8 2 1
L:L:?1 R:R:Q339 8.29 2 Yes Yes 0 8 0 1

Location and physicochemical properties of the interaction partners of this ligand

Interactions of this ligand

Similarities between the interactions of this ligand and those of other networks

PDB Summary
PDB 6AK3_poly
Class A
SubFamily Lipid
Type Prostanoid
SubType EP3
Species Homo sapiens
Ligand Dinoprostone IPGE2
Other Ligand(s) -
Protein Partners -
PDB Resolution 2.9
Date 2018-12-05
D.O.I. 10.1038/s41589-018-0171-8
Net Summary
Imin 3.04
Number of Linked Nodes 504
Number of Links 582
Number of Hubs 82
Number of Links mediated by Hubs 318
Number of Communities 15
Number of Nodes involved in Communities 94
Number of Links involved in Communities 136
Path Summary
Number Of Nodes in MetaPath 69
Number Of Links MetaPath 68
Number of Shortest Paths 314399
Length Of Smallest Path 3
Average Path Length 16.8931
Length of Longest Path 40
Minimum Path Strength 1.38
Average Path Strength 6.49516
Maximum Path Strength 21.28
Minimum Path Correlation 0.7
Average Path Correlation 0.962687
Maximum Path Correlation 1
Minimum % Of Corr. Nodes 3.57143
Average % Of Corr. Nodes 53.4748
Maximum % Of Corr. Nodes 100
Minimum Path Hubs % 0
Average Path Hubs % 56.8653
Maximum Path Hubs % 100
AnnotationTypeLinks
Gene OntologyMolecular Function
Gene OntologyBiological Process
Gene OntologyCellular Component
SCOP2Domain Identifier
SCOP2Family Identifier
Membrane Protein Annotations-• Orientations of Proteins in Membranes database (OPM)   • Protein Data Bank of Transmembrane Proteins (PDBTM)   • MemProtMD


Details about the values in these tables can be found in the corresponding documentation page .
CodeP2E
PDB ResiduesM:M:?1 L:L:?1
Environment DetailsOpen EMBL-EBI Page
CodeP2E
NameDinoprostone
SynonymsDinoprostone Prostaglandin E2
Identifier(Z)-7-[(1R,2R,3R)-3-hydroxy-2-[(E,3S)-3-hydroxyoct-1-enyl]-5-oxo-cyclopentyl]hept-5-enoic acid
FormulaC20 H32 O5
Molecular Weight352.465
SMILESCCCCC[C@@H](\C=C\[C@H]1[C@@H](CC(=O)[C@@H]1C\C=C/CCCC(=O)O)O)O
PubChem5280360
Formal Charge0
Total Atoms57
Total Chiral Atoms4
Total Bonds57
Total Aromatic Bonds0

PDBsumOpen PDBsum Page
ChainR
ProteinReceptor
UniProtP43115
Sequence
>6AK3_poly_Chain_R
CGSVSVAFP ITMLLTGFV GNALAMLLV SRSRKSFLL CIGWLALTD 
LVGQLLTTP VVIVVYLSK RWEHIDPGR LCTFFGLTM TVFGLSSLF 
IASAMAVER ALAIRAPHW YASHMKTRI TRAVLLGVW LASLAFALL 
PVLGVGQYT VQWPGTWCF ISTGGNLFF ASAFAFLGL LALTVTFSC 
NLATIKALV DRCRAKAAQ WGRITTETA IQLMGIMLV LSVCWSPLL 
IMMLKMIFK ECNFFLIAV RLASLNQIL DPWVYLLLR KILLR


Click on each residue to open a popup with some information about it.

ConSurf Conservation Grade (See documentation): 

 n/a   1    2    3    4    5    6    7    8    9  




This receptor, from the same or other species and bound to the same or other ligands, is also present in the following networks:
Show PDB Class SubFamily Type SubType Species Orthosteric Ligand Other Ligand(s) Protein Partners Resolution Date DOI
6AK3ALipidProstanoidEP3Homo sapiensDinoprostone IPGE2--2.92018-12-0510.1038/s41589-018-0171-8
6M9TALipidProstanoidEP3Homo sapiensMisoprostol-FA--2.52018-12-0510.1038/s41589-018-0160-y
7WU9ALipidProstanoidEP3Homo sapiens--Gi1/&β;1/&γ;23.382022-08-1710.1016/j.celrep.2022.111323
8GDCALipidProstanoidEP3Homo sapiensPGE2-Gi1/&β;1/&γ;23.52024-01-0310.1073/pnas.2216329120
6AK3 (Dimer)ALipidProstanoidEP3Homo sapiensDinoprostone IPGE2--2.92018-12-0510.1038/s41589-018-0171-8




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Download 6AK3_poly.zip



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