Color ConSurf Grade
      No Conservation data available
      1
      2
      3
      4
      5
      6
      7
      8
      9

Index: hub id, click on each number to highlight the corresponding hub in the 3D visualization.

Hub: the hub being considered.

Avg Int. Strength: the average interaction strength of all the links of the corresponding hub.

Num Of Links: the number of links of the corresponding hub.

Community: the id of the community the link belong to, otherwise 0.

ConSurf: this column reports the ConSurf conservation grades of each hub.

Index Hub Avg Int. Strength Num Of Links Community ConSurf
1R:R:R196 9.134504
2R:R:Y206 8.8075414
3R:R:Y211 10.3975407
4R:R:W222 10.54528
5R:R:W226 13.42425
6R:R:F231 6.235404
7R:R:F236 5.69435
8R:R:T240 6.04439
9R:R:F241 7.974588
10R:R:Y262 8.0225408
11R:R:Y265 5.676517
12R:R:Y269 6.07667616
13R:R:R272 6.164518
14R:R:R277 10.466516
15R:R:C282 4.3925409
16R:R:L297 4.7025406
17R:R:I305 3.665417
18R:R:F306 8.8175449
19R:R:L309 4.654516
20R:R:Y310 8.41143749
21R:R:F311 5.1125409
22R:R:W319 12.332569
23R:R:W320 9.736129
24R:R:L323 5.8754109
25R:R:T324 5.4425128
26R:R:W327 5.265609
27R:R:W335 7.78508
28R:R:W352 6.1075469
29R:R:I362 9.06446
30R:R:E372 7.1025406
31R:R:L376 5.346517
32R:R:Y378 5.766506
33R:R:L387 3.996558
34R:R:F390 6.325448
35R:R:L430 2.874148
36R:R:M434 4.2725408
37R:R:Y455 8.16454
38R:R:E458 9459
39R:R:W462 9.8075457
40R:R:F465 13.5075408
41R:R:K480 10.1075408
42R:R:F482 7.975427
43R:R:M483 6.0575429
44R:R:S491 4.938538
45R:R:I495 5.685437
46R:R:W504 7.6775439
   

Color ConSurf Grade
      No Conservation data available
      1
      2
      3
      4
      5
      6
      7
      8
      9

Index: link id, click on each number to highlight the corresponding link in the 3D visualization.

Node1 Node2: the two nodes of the corresponding link.

Recurrence: the relative Recurrence in the pool of shortest paths.

Int. Strength: the interaction strength between the two nodes.

Hub1?, Hub2?: "Yes" if the corresponding node has more than 3 links, otherwise "No".

Community: the id of the community the link belong to, otherwise 0.

ConSurf1, ConSurf2: these columns report the ConSurf conservation grades of the two nodes involved in a link.

Index Node1 Node2 Recurrence Int. Strength Hub1? Hub2? Community ConSurf1 ConSurf2
1R:R:C181 R:R:D189 15.75293.11NoNo094
2R:R:D189 R:R:W193 18.35564.47NoNo043
3R:R:K203 R:R:W193 20.95169.28NoNo053
4R:R:E289 R:R:K203 23.5419.45NoNo035
5R:R:E289 R:R:P290 26.12373.14NoNo033
6R:R:C282 R:R:P290 31.2693.77YesNo093
7R:R:C282 R:R:E278 36.27084.56YesNo095
8R:R:E278 R:R:Y206 38.80686.73NoYes054
9R:R:R277 R:R:Y206 26.020214.4YesYes164
10R:R:K216 R:R:R277 24.83913.61NoYes066
11R:R:E372 R:R:K216 23.86478.1YesNo066
12R:R:I192 R:R:L202 14.41162.85NoNo044
13R:R:I192 R:R:S188 11.541910.84NoNo041
14R:R:E372 R:R:L210 16.95085.3YesNo064
15R:R:Q294 R:R:R196 24.39524.67NoYes064
16R:R:Q294 R:R:Q382 25.78665.12NoNo065
17R:R:D369 R:R:Q382 28.496113.05NoNo085
18R:R:D369 R:R:N381 29.89429.42NoNo087
19R:R:L376 R:R:R272 61.6373.64YesYes178
20R:R:D220 R:R:R272 23.94145.96NoYes168
21R:R:D220 R:R:Y206 22.80366.9NoYes164
22R:R:N381 R:R:Y378 25.03923.49NoYes076
23R:R:L309 R:R:Y378 1003.52YesYes066
24R:R:L309 R:R:L376 55.78435.54YesYes167
25R:R:R272 R:R:R277 48.516813.86YesYes186
26R:R:E286 R:R:R196 13.69089.3NoYes024
27R:R:E372 R:R:Y211 10.243910.1YesYes067
28R:R:M223 R:R:R272 19.80713.72NoYes068
29R:R:M223 R:R:T219 15.97654.52NoNo065
30R:R:L373 R:R:T219 12.35288.84NoNo085
31R:R:L373 R:R:Y211 10.470821.1NoYes087
32R:R:N473 R:R:Y211 11.34173.49NoYes057
33R:R:M223 R:R:Y269 24.53877.18NoYes066
34R:R:I481 R:R:Y269 33.51463.63NoYes076
35R:R:I481 R:R:W222 31.71285.87NoYes078
36R:R:L376 R:R:Y269 32.51365.86YesYes176
37R:R:W222 R:R:W226 10.307319.68YesYes285
38R:R:F482 R:R:W222 20.6185.01YesYes278
39R:R:L485 R:R:Y269 27.85885.86NoYes186
40R:R:C230 R:R:L485 51.89034.76NoNo078
41R:R:C230 R:R:S266 50.70915.16NoNo078
42R:R:F231 R:R:S266 49.52125.28YesNo048
43R:R:F231 R:R:N263 44.702910.87YesNo045
44R:R:N263 R:R:T234 42.25378.77NoNo058
45R:R:S491 R:R:T234 41.01914.8YesNo088
46R:R:S491 R:R:T237 35.92386.4YesNo388
47R:R:I495 R:R:T237 34.72926.08YesNo378
48R:R:F236 R:R:I495 16.12677.54YesYes357
49R:R:I495 R:R:T240 14.75524.56YesYes379
50R:R:F236 R:R:W504 13.44727.02YesYes359
51R:R:T240 R:R:W504 13.56749.7YesYes399
52R:R:Y310 R:R:Y378 99.60967.94YesYes096
53R:R:K358 R:R:Y310 90.416811.94NoYes479
54R:R:K358 R:R:Y398 90.94067.17NoNo076
55R:R:I318 R:R:Y398 89.3698.46NoNo056
56R:R:I318 R:R:P355 87.03333.39NoNo1159
57R:R:F311 R:R:P355 87.11334.33YesNo099
58R:R:F311 R:R:W352 68.56084.01YesYes099
59R:R:W319 R:R:W352 65.33759.37YesYes699
60R:R:I322 R:R:W319 63.5697.05NoYes079
61R:R:F347 R:R:I322 62.881615.07NoNo087
62R:R:F347 R:R:L325 61.52023.65NoNo086
63R:R:L325 R:R:L329 50.49556.92NoNo068
64R:R:L329 R:R:W335 46.698319.36NoYes088
65R:R:I340 R:R:W335 41.31943.52NoYes098
66R:R:I340 R:R:P251 40.34846.77NoNo099
67R:R:P251 R:R:S249 16.46037.13NoNo996
68R:R:E252 R:R:S249 15.4768.62NoNo096
69R:R:E252 R:R:F248 12.934.66NoNo098
70R:R:F241 R:R:F248 10.62436.43YesNo888
71R:R:I243 R:R:W504 21.685710.57NoYes069
72R:R:I243 R:R:T503 13.59073.04NoNo067
73R:R:R247 R:R:T503 10.85122.59NoNo097
74R:R:H337 R:R:P251 22.90718.3NoNo969
75R:R:E431 R:R:H337 21.92277.39NoNo086
76R:R:F405 R:R:L325 20.554610.96NoNo086
77R:R:F405 R:R:T324 17.53145.19NoYes088
78R:R:S441 R:R:T324 10.64433.2NoYes088
79R:R:F311 R:R:F312 18.916210.72YesNo098
80R:R:C261 R:R:F312 16.88754.19NoNo088
81R:R:C261 R:R:S316 15.88313.44NoNo088
82R:R:S316 R:R:Y262 15.1997.63NoYes088
83R:R:V487 R:R:Y262 13.146911.36NoYes088
84R:R:Y265 R:R:Y269 17.23119.93YesYes176
85R:R:L309 R:R:Y265 42.69088.21YesYes167
86R:R:D283 R:R:E286 12.19599.09NoNo042
87R:R:V487 R:R:Y444 12.45626.31NoNo088
88R:R:W320 R:R:Y444 11.108134.73YesNo098
89R:R:M434 R:R:W327 10.20056.98YesYes089
90R:R:E431 R:R:M434 19.0434.06NoYes088
91R:R:V391 R:R:Y378 25.01928.83NoYes076
92R:R:L387 R:R:V391 15.27584.47YesNo587
93R:R:F465 R:R:N473 10.547626.58YesNo085
94R:R:E458 R:R:F465 11.878919.82YesYes098
95R:R:F482 R:R:M483 12.54964.98YesYes279
96R:R:L485 R:R:Y265 25.20273.52NoYes187
Download PSN data

2D representation of the global metapath, ligand(s) interactions and
histograms of path distribution according to several parameters
(click on the image to enlarge it 🔍):

A 2D representation of the global communication in the network.

ConSurf Conservation Grade (See documentation): 

 n/a   1    2    3    4    5    6    7    8    9  

Number of shortest communication paths as a function of the average residue correlation.

Number of shortest communication paths as a function of the average interaction strength of their links.

Number of shortest communication paths as a function of the % of hub nodes in each path.

Number of shortest communication paths as a function of the number of nodes in each path.

Number of shortest communication paths as a function of the % of correlated nodes in each path.


PDB Summary
PDB 6BD4
Class F
SubFamily Protein
Type Frizzled
SubType FZD4
Species Homo sapiens
Ligand -
Other Ligand(s) -
Protein Partners -
PDB Resolution 2.4
Date 2018-08-22
D.O.I. 10.1038/s41586-018-0447-x
Net Summary
Imin 3.39
Number of Linked Nodes 308
Number of Links 348
Number of Hubs 46
Number of Links mediated by Hubs 169
Number of Communities 14
Number of Nodes involved in Communities 65
Number of Links involved in Communities 78
Path Summary
Number Of Nodes in MetaPath 97
Number Of Links MetaPath 96
Number of Shortest Paths 68721
Length Of Smallest Path 3
Average Path Length 17.0093
Length of Longest Path 41
Minimum Path Strength 1.275
Average Path Strength 7.14414
Maximum Path Strength 23.2
Minimum Path Correlation 0.7
Average Path Correlation 0.936172
Maximum Path Correlation 0.99
Minimum % Of Corr. Nodes 2.7027
Average % Of Corr. Nodes 48.1057
Maximum % Of Corr. Nodes 100
Minimum Path Hubs % 0
Average Path Hubs % 41.3512
Maximum Path Hubs % 100
AnnotationTypeLinks
Gene OntologyMolecular Function
Gene OntologyBiological Process
Gene OntologyCellular Component
SCOP2Domain Identifier
SCOP2Family Identifier
Membrane Protein Annotations-• Orientations of Proteins in Membranes database (OPM)   • Protein Data Bank of Transmembrane Proteins (PDBTM)   • MemProtMD


Details about the values in these tables can be found in the corresponding documentation page .
PDBsumOpen PDBsum Page
ChainR
ProteinReceptor
UniProtQ9ULV1
Sequence
>6BD4_Chain_R
CHSVGTNSD QYIWVKRSL NCVLKCGYD AGLYSRSAK EFTDIWMAV 
WASLCFIST AFTVLTFLI DSSRFSYPE RPIIFLSMC YNIYSIAYI 
VRLTVGRER ISCDFEEAA EPVLIQEGL KNTGCAIIF LLLYFFGMA 
SSIWWVILT LTWFLAAGL KWGHEAIEM HSSYFHIAA WAIPAVKTI 
VILIMRLVD ADELTGLCY VGNQNLDAL TGFVVAPLF TYLVIGTLF 
IAAGLVALF KIRSNDKLE RLMVKIGVF SVLYTVPAT IVIACYFYE 
ISNWALFRY SADDSNMAV EMLKIFMSL LVGITSGMW IWSAKTLHT 
WQKFYNRLV N


Click on each residue to open a popup with some information about it.

ConSurf Conservation Grade (See documentation): 

 n/a   1    2    3    4    5    6    7    8    9  




This receptor, from the same or other species and bound to the same or other ligands, is also present in the following networks:
Show PDB Class SubFamily Type SubType Species Orthosteric Ligand Other Ligand(s) Protein Partners Resolution Date DOI




You can download a compressed (zip) file with structure(s), 3D outputs (as PyMol and VMD scripts) and numerical data files (as csv and plain text files).

Download 6BD4.zip



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