Color ConSurf Grade
      No Conservation data available
      1
      2
      3
      4
      5
      6
      7
      8
      9

Index: hub id, click on each number to highlight the corresponding hub in the 3D visualization.

Hub: the hub being considered.

Avg Int. Strength: the average interaction strength of all the links of the corresponding hub.

Num Of Links: the number of links of the corresponding hub.

Community: the id of the community the link belong to, otherwise 0.

ConSurf: this column reports the ConSurf conservation grades of each hub.

Index Hub Avg Int. Strength Num Of Links Community ConSurf
1R:R:R196 14.07404
2R:R:Y206 8.8075414
3R:R:Y211 10.3975407
4R:R:W222 10.54528
5R:R:W226 13.42425
6R:R:F231 6.235404
7R:R:F236 5.69435
8R:R:T240 6.04439
9R:R:F241 7.974588
10R:R:Y262 8.0225408
11R:R:Y265 5.676517
12R:R:Y269 6.07667616
13R:R:R272 6.164518
14R:R:R277 10.466516
15R:R:C282 4.3925409
16R:R:L297 4.7025406
17R:R:I305 3.665417
18R:R:F306 8.8175449
19R:R:L309 4.654516
20R:R:Y310 8.41143749
21R:R:F311 5.1125409
22R:R:W319 12.332569
23R:R:W320 9.736129
24R:R:L323 5.8754109
25R:R:T324 5.4425128
26R:R:W327 5.265609
27R:R:W335 7.78508
28R:R:W352 6.1075469
29R:R:I362 9.06446
30R:R:E372 7.1025406
31R:R:L376 5.346517
32R:R:Y378 5.766506
33R:R:L387 3.996558
34R:R:F390 6.325448
35R:R:L430 2.874148
36R:R:M434 4.2725408
37R:R:Y455 8.16454
38R:R:E458 9459
39R:R:W462 9.8075457
40R:R:F465 13.5075408
41R:R:K480 10.1075408
42R:R:F482 7.975427
43R:R:M483 6.0575429
44R:R:S491 4.938538
45R:R:I495 5.685437
46R:R:W504 7.6775439
   

Color ConSurf Grade
      No Conservation data available
      1
      2
      3
      4
      5
      6
      7
      8
      9

Index: link id, click on each number to highlight the corresponding link in the 3D visualization.

Node1 Node2: the two nodes of the corresponding link.

Recurrence: the relative Recurrence in the pool of shortest paths.

Int. Strength: the interaction strength between the two nodes.

Hub1?, Hub2?: "Yes" if the corresponding node has more than 3 links, otherwise "No".

Community: the id of the community the link belong to, otherwise 0.

ConSurf1, ConSurf2: these columns report the ConSurf conservation grades of the two nodes involved in a link.

Index Node1 Node2 Recurrence Int. Strength Hub1? Hub2? Community ConSurf1 ConSurf2
1R:R:C181 R:R:S188 15.68881.72NoNo091
2R:R:L202 R:R:L210 15.62924.15NoNo044
3R:R:I192 R:R:L202 28.59292.85NoNo044
4R:R:I192 R:R:S188 26.024610.84NoNo041
5R:R:G209 R:R:L202 15.40665.13NoNo064
6R:R:E372 R:R:G209 16.58254.91YesNo066
7R:R:E372 R:R:K216 32.69158.1YesNo066
8R:R:K216 R:R:R277 33.503713.61NoYes066
9R:R:R277 R:R:Y206 15.453614.4YesYes164
10R:R:E278 R:R:Y206 19.1326.73NoYes054
11R:R:C282 R:R:E278 16.76754.56YesNo095
12R:R:C282 R:R:P290 12.03863.77YesNo093
13R:R:E372 R:R:L210 24.26865.3YesNo064
14R:R:E295 R:R:R196 17.830610.47NoYes074
15R:R:E295 R:R:K298 18.90319.45NoNo075
16R:R:K298 R:R:R366 19.96618.66NoNo056
17R:R:L297 R:R:R366 21.02298.5YesNo066
18R:R:L297 R:R:V368 22.98915.96YesNo068
19R:R:F306 R:R:V368 24.020814.42YesNo098
20R:R:F306 R:R:Y310 26.52647.22YesYes499
21R:R:Y310 R:R:Y378 1007.94YesYes096
22R:R:L309 R:R:Y378 93.9763.52YesYes066
23R:R:L309 R:R:L376 51.33125.54YesYes167
24R:R:L376 R:R:R272 52.53223.64YesYes178
25R:R:R272 R:R:R277 47.590113.86YesYes186
26R:R:E286 R:R:R196 10.298224.42NoYes024
27R:R:E372 R:R:Y211 13.703810.1YesYes067
28R:R:L373 R:R:Y211 13.013921.1NoYes087
29R:R:N473 R:R:Y211 11.62473.49NoYes057
30R:R:L373 R:R:T219 14.61958.84NoNo085
31R:R:M223 R:R:T219 16.09024.52NoNo065
32R:R:M223 R:R:R272 17.03723.72NoYes068
33R:R:M223 R:R:Y269 24.69197.18NoYes066
34R:R:I481 R:R:Y269 29.18563.63NoYes076
35R:R:L376 R:R:Y269 28.79995.86YesYes176
36R:R:I481 R:R:W222 27.54555.87NoYes078
37R:R:F482 R:R:W222 17.99685.01YesYes278
38R:R:L485 R:R:Y269 28.95675.86NoYes186
39R:R:C230 R:R:L485 52.67964.76NoNo078
40R:R:C230 R:R:S266 51.54135.16NoNo078
41R:R:F231 R:R:S266 50.39675.28YesNo048
42R:R:F231 R:R:N263 45.755610.87YesNo045
43R:R:N263 R:R:T234 43.39748.77NoNo058
44R:R:S491 R:R:T234 42.20894.8YesNo088
45R:R:S491 R:R:T237 37.30136.4YesNo388
46R:R:I495 R:R:T237 36.15676.08YesNo378
47R:R:F236 R:R:I495 16.88367.54YesYes357
48R:R:I495 R:R:T240 15.56024.56YesYes379
49R:R:F236 R:R:W504 14.30277.02YesYes359
50R:R:T240 R:R:W504 14.41889.7YesYes399
51R:R:K358 R:R:Y310 85.302111.94NoYes479
52R:R:K358 R:R:Y398 85.79137.17NoNo076
53R:R:I318 R:R:Y398 84.30498.46NoNo056
54R:R:I318 R:R:P355 82.10043.39NoNo1159
55R:R:F311 R:R:P355 82.17254.33YesNo099
56R:R:F311 R:R:W352 64.66814.01YesYes099
57R:R:W319 R:R:W352 61.62639.37YesYes699
58R:R:I322 R:R:W319 59.95487.05NoYes079
59R:R:F347 R:R:I322 59.305715.07NoNo087
60R:R:F347 R:R:L325 58.023.65NoNo086
61R:R:L325 R:R:L329 47.60586.92NoNo068
62R:R:L329 R:R:W335 44.024619.36NoYes088
63R:R:I340 R:R:W335 38.95073.52NoYes098
64R:R:I340 R:R:P251 38.03516.77NoNo099
65R:R:P251 R:R:S249 15.51637.13NoNo996
66R:R:E252 R:R:S249 14.58818.62NoNo096
67R:R:E252 R:R:F248 12.1864.66NoNo098
68R:R:F241 R:R:F248 10.01296.43YesNo888
69R:R:I243 R:R:W504 23.581810.57NoYes069
70R:R:I243 R:R:T503 15.77663.04NoNo067
71R:R:R247 R:R:T503 13.13312.59NoNo097
72R:R:H337 R:R:P251 21.593718.3NoNo969
73R:R:E431 R:R:H337 20.66547.39NoNo086
74R:R:F405 R:R:L325 19.367210.96NoNo086
75R:R:F405 R:R:T324 16.51675.19NoYes088
76R:R:S441 R:R:T324 10.03173.2NoYes088
77R:R:F311 R:R:F312 17.8410.72YesNo098
78R:R:C261 R:R:F312 15.92714.19NoNo088
79R:R:C261 R:R:S316 14.98013.44NoNo088
80R:R:S316 R:R:Y262 14.33417.63NoYes088
81R:R:V487 R:R:Y262 12.396111.36NoYes088
82R:R:Y265 R:R:Y269 16.33169.93YesYes176
83R:R:L309 R:R:Y265 41.24938.21YesYes167
84R:R:V487 R:R:Y444 11.74396.31NoNo088
85R:R:W320 R:R:Y444 10.470734.73YesNo098
86R:R:E431 R:R:M434 17.94984.06NoYes088
87R:R:F465 R:R:N473 10.677726.58YesNo085
88R:R:E458 R:R:F465 11.734519.82YesYes098
89R:R:L387 R:R:V391 14.18984.47YesNo587
90R:R:F482 R:R:M483 10.96624.98YesYes279
91R:R:D220 R:R:R272 14.07385.96NoYes168
92R:R:D220 R:R:Y206 13.02336.9NoYes164
93R:R:V391 R:R:Y378 22.97348.83NoYes076
94R:R:L485 R:R:Y265 24.85183.52NoYes187
Download PSN data

2D representation of the global metapath, ligand(s) interactions and
histograms of path distribution according to several parameters
(click on the image to enlarge it 🔍):

A 2D representation of the global communication in the network.

ConSurf Conservation Grade (See documentation): 

 n/a   1    2    3    4    5    6    7    8    9  

Number of shortest communication paths as a function of the average residue correlation.

Number of shortest communication paths as a function of the average interaction strength of their links.

Number of shortest communication paths as a function of the % of hub nodes in each path.

Number of shortest communication paths as a function of the number of nodes in each path.

Number of shortest communication paths as a function of the % of correlated nodes in each path.


PDB Summary
PDB 6BD4
Class F
SubFamily Protein
Type Frizzled
SubType FZD4
Species Homo Sapiens
Ligand -
Other Ligand(s) -
Protein Partners -
PDB Resolution 2.4
Date 2018-08-22
D.O.I. 10.1038/s41586-018-0447-x
Net Summary
Imin 3.39
Number of Linked Nodes 308
Number of Links 347
Number of Hubs 46
Number of Links mediated by Hubs 168
Number of Communities 14
Number of Nodes involved in Communities 65
Number of Links involved in Communities 78
Path Summary
Number Of Nodes in MetaPath 95
Number Of Links MetaPath 94
Number of Shortest Paths 68091
Length Of Smallest Path 3
Average Path Length 17.1378
Length of Longest Path 41
Minimum Path Strength 1.75
Average Path Strength 7.26027
Maximum Path Strength 23.2
Minimum Path Correlation 0.7
Average Path Correlation 0.936696
Maximum Path Correlation 0.99
Minimum % Of Corr. Nodes 2.7027
Average % Of Corr. Nodes 49.1053
Maximum % Of Corr. Nodes 100
Minimum Path Hubs % 0
Average Path Hubs % 42.1012
Maximum Path Hubs % 100
AnnotationTypeLinks
Gene OntologyMolecular Function• molecular transducer activity   • transmembrane signaling receptor activity   • signaling receptor activity   • Wnt receptor activity   • amide binding   • amyloid-beta binding   • binding   • peptide binding   • protein-containing complex binding   • ubiquitin protein ligase binding   • protein binding   • ubiquitin-like protein ligase binding   • enzyme binding   • Wnt-protein binding   • G protein-coupled receptor activity   • PDZ domain binding   • protein domain specific binding   • protein heterodimerization activity   • protein dimerization activity   • cytokine receptor activity   • immune receptor activity   • cytokine binding   • identical protein binding   • protein homodimerization activity   • electron transfer activity   • cation binding   • transition metal ion binding   • iron ion binding   • ion binding   • metal ion binding   • small molecule binding   • cellular response to stimulus   • regulation of biological process   • regulation of cellular process   • cell surface receptor signaling pathway   • response to stimulus   • signaling   • canonical Wnt signaling pathway   • biological regulation   • cell communication   • cellular process   • signal transduction   • Wnt signaling pathway   • cell population proliferation   • cell adhesion
Gene OntologyBiological Process• cellular response to stimulus   • regulation of biological process   • regulation of cellular process   • cell surface receptor signaling pathway   • response to stimulus   • signaling   • canonical Wnt signaling pathway   • biological regulation   • cell communication   • cellular process   • signal transduction   • Wnt signaling pathway   • cell population proliferation   • cell adhesion   • substrate adhesion-dependent cell spreading   • cell-substrate adhesion   • positive regulation of DNA-binding transcription factor activity   • RNA metabolic process   • regulation of primary metabolic process   • nucleobase-containing compound metabolic process   • RNA biosynthetic process   • positive regulation of molecular function   • nucleic acid biosynthetic process   • DNA-templated transcription   • regulation of RNA metabolic process   • regulation of nucleobase-containing compound metabolic process   • regulation of RNA biosynthetic process   • regulation of biosynthetic process   • primary metabolic process   • regulation of macromolecule metabolic process   • nucleobase-containing compound biosynthetic process   • gene expression   • macromolecule biosynthetic process   • nucleic acid metabolic process   • regulation of molecular function   • regulation of gene expression   • biosynthetic process   • regulation of DNA-binding transcription factor activity   • metabolic process   • regulation of macromolecule biosynthetic process   • regulation of DNA-templated transcription   • macromolecule metabolic process   • regulation of metabolic process   • response to lipid   • response to oxygen-containing compound   • cellular response to oxygen-containing compound   • response to retinoic acid   • cellular response to chemical stimulus   • cellular response to retinoic acid   • response to chemical   • cellular response to lipid   • multicellular organismal process   • system process   • sensory perception   • nervous system process   • sensory perception of sound   • sensory perception of mechanical stimulus   • response to decreased oxygen levels   • response to hypoxia   • response to stress   • response to oxygen levels   • response to abiotic stimulus   • regulation of cellular component organization   • positive regulation of cellular component organization   • regulation of developmental process   • cellular developmental process   • regulation of neuron projection arborization   • cell projection organization   • plasma membrane bounded cell projection morphogenesis   • positive regulation of biological process   • cell development   • neuron projection development   • cell morphogenesis   • regulation of cell morphogenesis   • cellular component organization   • positive regulation of developmental process   • neurogenesis   • multicellular organism development   • cell projection morphogenesis   • neuron differentiation   • neuron projection morphogenesis   • cell differentiation   • anatomical structure development   • positive regulation of cell projection organization   • cellular component organization or biogenesis   • regulation of anatomical structure morphogenesis   • positive regulation of cellular process   • system development   • developmental process   • plasma membrane bounded cell projection organization   • regulation of cell projection organization   • positive regulation of neuron projection arborization   • nervous system development   • generation of neurons   • anatomical structure morphogenesis   • neuron projection arborization   • neuron development   • positive regulation of DNA-templated transcription   • positive regulation of macromolecule biosynthetic process   • positive regulation of metabolic process   • transcription by RNA polymerase II   • positive regulation of biosynthetic process   • positive regulation of macromolecule metabolic process   • regulation of transcription by RNA polymerase II   • positive regulation of nucleobase-containing compound metabolic process   • positive regulation of transcription by RNA polymerase II   • positive regulation of RNA metabolic process   • positive regulation of RNA biosynthetic process   • sensory organ development   • blood vessel morphogenesis   • tube development   • retina vasculature development in camera-type eye   • eye development   • animal organ development   • retina development in camera-type eye   • visual system development   • retina vasculature morphogenesis in camera-type eye   • vasculature development   • circulatory system development   • tube morphogenesis   • camera-type eye development   • retinal blood vessel morphogenesis   • sensory system development   • blood vessel development   • establishment of blood-brain barrier   • central nervous system development   • angiogenesis   • anatomical structure formation involved in morphogenesis   • head development   • cerebellum vasculature development   • brain development   • cerebellum development   • metencephalon development   • cerebellum vasculature morphogenesis   • hindbrain development   • non-canonical Wnt signaling pathway   • epithelium development   • endothelial cell differentiation   • endothelium development   • tissue development   • epithelial cell differentiation   • Norrin signaling pathway   • cellular process involved in reproduction in multicellular organism   • localization   • development of primary sexual characteristics   • reproductive structure development   • regulation of biological quality   • gonad development   • luteinization   • regulation of hormone levels   • lipid transport   • establishment of localization   • endocrine hormone secretion   • lipid export from cell   • ovulation cycle process   • transport   • reproductive process   • steroid hormone secretion   • sex differentiation   • development of primary female sexual characteristics   • hormone secretion   • developmental process involved in reproduction   • progesterone secretion   • ovulation cycle   • secretion by cell   • signal release   • rhythmic process   • reproductive system development   • secretion   • female gonad development   • multicellular organismal reproductive process   • lipid localization   • export from cell   • cell-cell signaling   • female sex differentiation   • endocrine process   • macromolecule localization   • hormone transport   • cellular response to growth factor stimulus   • regulation of signal transduction   • cell surface receptor protein tyrosine kinase signaling pathway   • regulation of vascular endothelial growth factor receptor signaling pathway   • cellular response to endogenous stimulus   • enzyme-linked receptor protein signaling pathway   • regulation of signaling   • response to endogenous stimulus   • regulation of cellular response to growth factor stimulus   • vascular endothelial growth factor receptor signaling pathway   • regulation of response to stimulus   • regulation of cell communication   • response to growth factor   • vasculogenesis   • positive regulation of locomotion   • regulation of cell motility   • positive regulation of cell migration   • regulation of locomotion   • positive regulation of cell motility   • regulation of cell migration   • cell migration   • cell motility   • locomotion   • extracellular matrix-cell signaling   • regulation of cell-substrate adhesion   • regulation of cell adhesion   • negative regulation of biological process   • negative regulation of cell adhesion   • negative regulation of cellular process   • negative regulation of cell-substrate adhesion   • Wnt signaling pathway, calcium modulating pathway   • behavior   • locomotory behavior   • locomotion involved in locomotory behavior   • positive regulation of nervous system development   • regulation of cell differentiation   • regulation of neurogenesis   • regulation of cell development   • regulation of dendrite morphogenesis   • positive regulation of cell development   • positive regulation of cell morphogenesis   • regulation of dendrite development   • positive regulation of multicellular organismal process   • regulation of neuron projection development   • regulation of nervous system development   • positive regulation of cell differentiation   • dendrite development   • positive regulation of neurogenesis   • regulation of multicellular organismal process   • regulation of multicellular organismal development   • positive regulation of dendrite morphogenesis   • dendrite morphogenesis   • cell morphogenesis involved in neuron differentiation   • regulation of plasma membrane bounded cell projection organization   • response to peptide   • response to cytokine   • response to leukemia inhibitory factor   • cellular response to cytokine stimulus   • cellular response to leukemia inhibitory factor   • alkane metabolic process   • catabolic process   • hydrocarbon catabolic process   • alkane catabolic process   • hydrocarbon metabolic process   • cell-cell junction   • cellular anatomical structure   • anchoring junction   • cell junction   • membrane-bounded organelle   • intracellular anatomical structure   • intracellular vesicle   • intracellular organelle   • bounding membrane of organelle   • cytoplasmic vesicle   • vesicle membrane   • clathrin-coated vesicle   • endocytic vesicle membrane   • coated vesicle
Gene OntologyCellular Component• cell-cell junction   • cellular anatomical structure   • anchoring junction   • cell junction   • membrane-bounded organelle   • intracellular anatomical structure   • intracellular vesicle   • intracellular organelle   • bounding membrane of organelle   • cytoplasmic vesicle   • vesicle membrane   • clathrin-coated vesicle   • endocytic vesicle membrane   • coated vesicle   • vesicle   • endocytic vesicle   • clathrin-coated vesicle membrane   • clathrin-coated endocytic vesicle membrane   • membrane   • intracellular membrane-bounded organelle   • clathrin-coated endocytic vesicle   • cytoplasmic vesicle membrane   • coated vesicle membrane   • organelle   • cytoplasm   • organelle membrane   • somatodendritic compartment   • cell projection   • dendrite   • dendritic tree   • neuron projection   • plasma membrane bounded cell projection   • synapse   • glutamatergic synapse   • cilium   • cell surface   • cell periphery   • plasma membrane   • nucleus   • membrane-enclosed lumen   • intracellular organelle lumen   • nucleoplasm   • organelle lumen   • nuclear lumen
SCOP2Domain Identifier• Rubredoxin-like
SCOP2Family Identifier• Rubredoxin-like
Membrane Protein Annotations-• Orientations of Proteins in Membranes database (OPM)   • Protein Data Bank of Transmembrane Proteins (PDBTM)   • MemProtMD


Details about the values in these tables can be found in the corresponding documentation page .
PDBsumOpen PDBsum Page
ChainR
ProteinReceptor
UniProtQ9ULV1
Sequence
>6BD4_Chain_R
CHSVGTNSD QYIWVKRSL NCVLKCGYD AGLYSRSAK EFTDIWMAV 
WASLCFIST AFTVLTFLI DSSRFSYPE RPIIFLSMC YNIYSIAYI 
VRLTVGRER ISCDFEEAA EPVLIQEGL KNTGCAIIF LLLYFFGMA 
SSIWWVILT LTWFLAAGL KWGHEAIEM HSSYFHIAA WAIPAVKTI 
VILIMRLVD ADELTGLCY VGNQNLDAL TGFVVAPLF TYLVIGTLF 
IAAGLVALF KIRSNDKLE RLMVKIGVF SVLYTVPAT IVIACYFYE 
ISNWALFRY SADDSNMAV EMLKIFMSL LVGITSGMW IWSAKTLHT 
WQKFYNRLV N


Click on each residue to open a popup with some information about it.

ConSurf Conservation Grade (See documentation): 

 n/a   1    2    3    4    5    6    7    8    9  




This receptor, from the same or other species and bound to the same or other ligands, is also present in the following networks:
Show PDB Class SubFamily Type SubType Species Orthosteric Ligand Other Ligand(s) Protein Partners Resolution Date DOI
8WMAFProteinFrizzledFZD4Homo sapiensDVL-2--3.472024-09-11doi.org/10.1038/s41467-024-52174-z
8WM9FProteinFrizzledFZD4Homo sapiensDVL-2--3.532024-09-11doi.org/10.1038/s41467-024-52174-z




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