Color ConSurf Grade
      No Conservation data available
      1
      2
      3
      4
      5
      6
      7
      8
      9

Index: hub id, click on each number to highlight the corresponding hub in the 3D visualization.

Hub: the hub being considered.

Avg Int. Strength: the average interaction strength of all the links of the corresponding hub.

Num Of Links: the number of links of the corresponding hub.

Community: the id of the community the link belong to, otherwise 0.

ConSurf: this column reports the ConSurf conservation grades of each hub.

Index Hub Avg Int. Strength Num Of Links Community ConSurf
1R:R:V37 2.99405
2R:R:Y49 7.56407
3R:R:N60 6.4425409
4R:R:L67 3.8375407
5R:R:L76 8.195436
6R:R:Y80 7.3025437
7R:R:L82 3.5575406
8R:R:F91 5.8275406
9R:R:T94 3.718527
10R:R:W98 6.366526
11R:R:W106 4.88857728
12R:R:F116 6.6425426
13R:R:T117 7.8625426
14R:R:Y124 8.075417
15R:R:F125 3.87667617
16R:R:F130 6.475837
17R:R:I132 4.245418
18R:R:L133 5.47436
19R:R:T135 3.6725419
20R:R:R152 6.404537
21R:R:W165 5.02639
22R:R:P192 4.655424
23R:R:Y193 6.0325474
24R:R:F194 6.59564
25R:R:R206 6.685415
26R:R:P214 5.6125418
27R:R:I217 3.3125416
28R:R:Y222 4.83833618
29R:R:Y252 7.4519
30R:R:F255 5.72418
31R:R:W256 10.9675419
32R:R:T257 7.325405
33R:R:Q269 4404
34R:R:F272 3.422591
35R:R:E291 7.4725425
36R:R:M295 5.4275407
37R:R:H297 9.088519
38R:R:Y305 5.9575419
39L:L:Q1 6.73857720
40L:L:P2 7.278520
41L:L:A7 2.76450
42L:L:P8 2.6925400
43L:L:Y13 6.98400
44L:L:I20 4.5225440
45L:L:L25 5.61440
46L:L:V41 5.195440
47L:L:F43 5.61640
48L:L:D54 4.205400
49L:L:W59 8.96440
50L:L:V60 4.82440
   

Color ConSurf Grade
      No Conservation data available
      1
      2
      3
      4
      5
      6
      7
      8
      9

Index: link id, click on each number to highlight the corresponding link in the 3D visualization.

Node1 Node2: the two nodes of the corresponding link.

Recurrence: the relative Recurrence in the pool of shortest paths.

Int. Strength: the interaction strength between the two nodes.

Hub1?, Hub2?: "Yes" if the corresponding node has more than 3 links, otherwise "No".

Community: the id of the community the link belong to, otherwise 0.

ConSurf1, ConSurf2: these columns report the ConSurf conservation grades of the two nodes involved in a link.

Index Node1 Node2 Recurrence Int. Strength Hub1? Hub2? Community ConSurf1 ConSurf2
1L:L:E50 R:R:P31 13.321211NoNo004
2R:R:K34 R:R:P31 65.69345.02NoNo054
3L:L:Y13 R:R:C32 10.65935.38YesNo009
4L:L:P37 R:R:Q269 21.06876.32NoYes004
5L:L:C36 L:L:P37 22.25091.88NoNo1100
6L:L:C36 L:L:P8 24.79373.77NoYes000
7L:L:A7 L:L:P8 82.67221.87YesYes000
8L:L:A7 R:R:D284 74.31374.63YesNo504
9R:R:D284 R:R:V37 73.72662.92NoYes045
10R:R:D36 R:R:V37 68.44264.38NoYes035
11R:R:D36 R:R:K34 67.53414.15NoNo035
12L:L:A7 R:R:K38 10.78631.61YesNo005
13L:L:P2 R:R:Y49 13.14662.78YesYes007
14L:L:P2 R:R:W98 61.151210.81YesYes206
15L:L:Q1 R:R:W98 64.34866.57YesYes206
16L:L:Q1 R:R:P192 99.73424.74YesYes204
17L:L:K35 R:R:P192 1001.67NoYes004
18L:L:K35 L:L:P8 97.08433.35NoYes000
19L:L:Q1 R:R:T117 72.96112.76YesYes206
20R:R:H121 R:R:T117 74.19872.74NoYes056
21R:R:H121 R:R:R206 63.53544.51NoYes055
22R:R:R206 R:R:Y124 53.00713.38YesYes157
23R:R:W256 R:R:Y124 55.99817.72YesYes197
24R:R:H297 R:R:W256 17.085817.98YesYes199
25L:L:P2 R:R:E291 13.11096.29YesYes205
26R:R:L95 R:R:M295 10.11192.83NoYes077
27R:R:C298 R:R:D88 51.26947.78NoNo089
28R:R:C298 R:R:F91 51.39244.19NoYes086
29R:R:F91 R:R:Y120 39.800912.38YesNo066
30L:L:P2 R:R:Y120 35.44519.74YesNo206
31R:R:L67 R:R:L82 18.77584.15YesYes076
32R:R:I86 R:R:L82 29.38754.28NoYes056
33R:R:I86 R:R:W165 30.51413.52NoYes059
34R:R:F130 R:R:W165 32.100910.02YesYes379
35R:R:F130 R:R:L84 56.99782.44YesNo079
36R:R:D88 R:R:L84 50.6034.07NoNo099
37R:R:F130 R:R:Y80 16.30434.13YesYes377
38R:R:L76 R:R:Y80 12.7388.21YesYes367
39R:R:I131 R:R:L84 34.71524.28NoNo089
40R:R:I131 R:R:N301 33.31484.25NoNo189
41R:R:H297 R:R:N301 36.30210.2YesNo199
42R:R:T94 R:R:W98 10.42927.28YesYes276
43R:R:H121 R:R:S172 10.9412.79NoNo057
44R:R:F125 R:R:S172 10.67912.64YesNo077
45R:R:F125 R:R:F129 15.76883.22YesNo075
46R:R:F129 R:R:V167 13.8253.93NoNo054
47R:R:W256 R:R:Y252 38.503712.54YesYes199
48R:R:M218 R:R:T135 12.56744.52NoYes189
49R:R:M218 R:R:Y252 37.51985.99NoYes189
50R:R:C221 R:R:T135 11.00843.38NoYes079
51R:R:M218 R:R:Y222 23.84563.59NoYes188
52R:R:I163 R:R:V167 11.87321.54NoNo044
53R:R:H202 R:R:R206 14.30895.64NoYes055
54R:R:F194 R:R:H202 13.047412.44YesNo045
55R:R:I263 R:R:Y259 12.444510.88NoNo066
56R:R:E291 R:R:Y259 16.530511.22YesNo056
57R:R:I263 R:R:T203 10.38964.56NoNo065
58R:R:L215 R:R:Y252 19.98974.69NoYes069
59R:R:L211 R:R:L215 18.71232.77NoNo086
60R:R:L211 R:R:N260 12.20649.61NoNo088
61R:R:N207 R:R:N260 10.88155.45NoNo058
62L:L:C52 R:R:A30 54.05031.81NoNo004
63R:R:A30 R:R:P31 55.06981.87NoNo044
64L:L:I51 L:L:N17 48.82187.08NoNo000
65L:L:C52 L:L:N17 50.93221.57NoNo000
66L:L:F43 L:L:W59 10.40943.01YesYes400
67L:L:F43 L:L:I20 29.30423.77YesYes400
68L:L:I20 L:L:I51 43.40297.36YesNo000
69L:L:I20 L:L:R24 10.78631.25YesNo000
70L:L:V41 L:L:Y28 12.03986.31YesNo000
71L:L:F43 L:L:V41 14.24557.87YesYes400
72R:R:F91 R:R:M295 12.27783.73YesYes067
73R:R:H297 R:R:Y252 22.98875.44YesYes199
Download PSN data

2D representation of the global metapath, ligand(s) interactions and
histograms of path distribution according to several parameters
(click on the image to enlarge it 🔍):

A 2D representation of the global communication in the network.

ConSurf Conservation Grade (See documentation): 

 n/a   1    2    3    4    5    6    7    8    9  

Number of shortest communication paths as a function of the average residue correlation.

Number of shortest communication paths as a function of the average interaction strength of their links.

Number of shortest communication paths as a function of the % of hub nodes in each path.

Number of shortest communication paths as a function of the number of nodes in each path.

Number of shortest communication paths as a function of the % of correlated nodes in each path.


2D representation of the interactions of this orthosteric/allosteric ligand.


Links and nodes colored according to ConSurf Conservation Grade (See documentation): 

 n/a   1    2    3    4    5    6    7    8    9  

Node1 Node2 LinkStrength Comm IsNode1Hub? IsNode2Hub? Node1Cons Node2Cons Node1Shell Node2Shell
R:R:K34 R:R:P31 5.02 0 No No 5 4 2 1
L:L:E50 R:R:P31 11 0 No No 0 4 0 1
R:R:C277 R:R:C32 7.28 0 No No 6 9 2 1
L:L:Y13 R:R:C32 5.38 0 Yes No 0 9 0 1
R:R:D284 R:R:H33 5.04 5 No No 4 3 1 1
L:L:A7 R:R:H33 2.93 5 Yes No 0 3 0 1
R:R:D284 R:R:V37 2.92 5 No Yes 4 5 1 2
R:R:K38 R:R:N104 11.19 0 No No 5 4 1 2
R:R:G41 R:R:Q288 4.93 0 No No 3 4 2 1
R:R:L45 R:R:Y49 16.41 0 No Yes 6 7 2 1
R:R:L45 R:R:Q288 7.99 0 No No 6 4 2 1
R:R:A99 R:R:Y49 2.67 0 No Yes 7 7 2 1
R:R:M295 R:R:Y49 8.38 0 Yes Yes 7 7 2 1
L:L:P2 R:R:Y49 2.78 2 Yes Yes 0 7 0 1
R:R:F91 R:R:Y120 12.38 0 Yes No 6 6 2 1
R:R:F91 R:R:M295 3.73 0 Yes Yes 6 7 2 2
R:R:T94 R:R:W98 7.28 2 Yes Yes 7 6 2 1
R:R:S101 R:R:W98 2.47 0 No Yes 4 6 2 1
L:L:Q1 R:R:W98 6.57 2 Yes Yes 0 6 0 1
L:L:P2 R:R:W98 10.81 2 Yes Yes 0 6 0 1
L:L:I5 R:R:W98 4.7 2 No Yes 0 6 0 1
R:R:S101 R:R:W106 4.94 0 No Yes 4 8 2 2
R:R:C113 R:R:W106 3.92 2 No Yes 9 8 2 2
R:R:C190 R:R:W106 9.14 2 No Yes 9 8 1 2
R:R:C113 R:R:C190 7.28 2 No No 9 9 2 1
R:R:K114 R:R:T179 3 0 No No 7 5 2 1
R:R:H121 R:R:T117 2.74 0 No Yes 5 6 2 1
R:R:T117 R:R:T179 14.13 2 Yes No 6 5 1 1
L:L:Q1 R:R:T117 12.76 2 Yes Yes 0 6 0 1
R:R:E291 R:R:Y120 5.61 2 Yes No 5 6 1 1
L:L:P2 R:R:Y120 9.74 2 Yes No 0 6 0 1
R:R:F194 R:R:G175 3.01 6 Yes No 4 4 1 2
R:R:F178 R:R:F194 7.5 0 No Yes 4 4 2 1
L:L:Q1 R:R:T179 2.83 2 Yes No 0 5 0 1
L:L:R29 R:R:D185 7.15 8 No No 0 3 0 1
L:L:Q1 R:R:C190 6.1 2 Yes No 0 9 0 1
R:R:G191 R:R:P192 4.06 2 No Yes 4 4 1 1
L:L:Q1 R:R:G191 4.93 2 Yes No 0 4 0 1
L:L:Q1 R:R:P192 4.74 2 Yes Yes 0 4 0 1
L:L:N6 R:R:P192 8.15 2 No Yes 0 4 0 1
R:R:F194 R:R:N199 6.04 6 Yes No 4 3 1 1
R:R:F194 R:R:H202 12.44 6 Yes No 4 5 1 2
L:L:S34 R:R:F194 3.96 6 No Yes 0 4 0 1
L:L:S34 R:R:N199 7.45 6 No No 0 3 0 1
R:R:E291 R:R:Y259 11.22 2 Yes No 5 6 1 2
R:R:T287 R:R:V262 3.17 0 No No 4 5 1 2
R:R:N266 R:R:Q269 3.96 0 No Yes 4 4 2 1
R:R:Q269 R:R:S275 2.89 0 Yes No 4 3 1 1
R:R:Q269 R:R:T280 2.83 0 Yes No 4 2 1 1
L:L:P37 R:R:Q269 6.32 11 No Yes 0 4 0 1
L:L:Y13 R:R:S275 8.9 0 Yes No 0 3 0 1
L:L:Y13 R:R:T280 12.48 0 Yes No 0 2 0 1
L:L:A7 R:R:D284 4.63 5 Yes No 0 4 0 1
L:L:D3 R:R:T287 4.34 0 No No 0 4 0 1
L:L:A4 R:R:Q288 3.03 0 No No 0 4 0 1
R:R:E291 R:R:M295 6.77 2 Yes Yes 5 7 1 2
L:L:P2 R:R:E291 6.29 2 Yes Yes 0 5 0 1
R:R:A30 R:R:P31 1.87 0 No No 4 4 1 1
R:R:G118 R:R:T117 1.82 0 No Yes 6 6 2 1
L:L:C52 R:R:A30 1.81 0 No No 0 4 0 1
L:L:K49 R:R:G29 1.74 0 No No 0 1 0 1
L:L:K35 R:R:P192 1.67 0 No Yes 0 4 0 1
L:L:A7 R:R:K38 1.61 5 Yes No 0 5 0 1
L:L:V9 R:R:D185 1.46 0 No No 0 3 0 1

Location and physicochemical properties of the interaction partners of this ligand

Interactions of this ligand

Similarities between the interactions of this ligand and those of other networks

PDB Summary
PDB 7XA3_nogp
Class
SubFamily
Type
SubType
Species
Ligand
Other Ligand(s)
Protein Partners
PDB Resolution
Date
D.O.I.
Net Summary
Imin 2.44
Number of Linked Nodes 324
Number of Links 364
Number of Hubs 50
Number of Links mediated by Hubs 186
Number of Communities 11
Number of Nodes involved in Communities 78
Number of Links involved in Communities 105
Path Summary
Number Of Nodes in MetaPath 74
Number Of Links MetaPath 73
Number of Shortest Paths 57975
Length Of Smallest Path 3
Average Path Length 15.7527
Length of Longest Path 40
Minimum Path Strength 1.25
Average Path Strength 5.4958
Maximum Path Strength 14.77
Minimum Path Correlation 0.7
Average Path Correlation 0.941804
Maximum Path Correlation 0.99
Minimum % Of Corr. Nodes 3.0303
Average % Of Corr. Nodes 56.8043
Maximum % Of Corr. Nodes 100
Minimum Path Hubs % 0
Average Path Hubs % 45.0371
Maximum Path Hubs % 100
AnnotationTypeLinks
Gene OntologyMolecular Function
Gene OntologyBiological Process
Gene OntologyCellular Component
SCOP2Domain Identifier• Transducin (heterotrimeric G protein), gamma chain   • Ras-like P-loop GTPases   • Interleukin 8-like chemokines   • G protein-coupled receptor-like
SCOP2Family Identifier• Transducin (heterotrimeric G protein), gamma chain   • Ras-like P-loop GTPases   • Interleukin 8-like chemokines   • G protein-coupled receptor-like
Membrane Protein Annotations-• Orientations of Proteins in Membranes database (OPM)   • Protein Data Bank of Transmembrane Proteins (PDBTM)   • MemProtMD


Details about the values in these tables can be found in the corresponding documentation page .
PDBsumOpen PDBsum Page
ChainR
ProteinReceptor
UniProtP41597
Sequence
>7XA3_nogp_Chain_R
GAPCHKFDV KQIGAQLLP PLYSLVFIF GFVGNMLVV LILINCKKL 
KCLTDIYLL NLAISDLLF LITLPLWAH SAANEWVFG NAMCKLFTG 
LYHIGYFGG IFFIILLTI DRYLAIVHA VFALKARTV TFGVVTSVI 
TWLVAVFAS VPGIIFTKC QKEDSVYVC GPYFPRGWN NFHTIMRNI 
LGLVLPLLI MVICYSGIL KTLLRCRNE KKRHRAVRV IFTIMIVYF 
LFWTPYNIV ILLNTFQEF FGLSNCEST SQLDQATQV TETLGMTHC 
CINPIIYAF VGEKFR


Click on each residue to open a popup with some information about it.

ConSurf Conservation Grade (See documentation): 

 n/a   1    2    3    4    5    6    7    8    9  




This receptor, from the same or other species and bound to the same or other ligands, is also present in the following networks:
Show PDB Class SubFamily Type SubType Species Orthosteric Ligand Other Ligand(s) Protein Partners Resolution Date DOI
5T1AAProteinChemokineCCR2Homo sapiensBMS-681PubChem 12093170-2.812016-12-14doi.org/10.1038/nature20605
6GPSAProteinChemokineCCR2Homo sapiensMK0812--3.32019-01-02doi.org/10.1016/j.str.2018.10.027
6GPXAProteinChemokineCCR2Homo sapiensMK0812--2.72019-01-02doi.org/10.1016/j.str.2018.10.027
7XA3AProteinChemokineCCR2Homo sapiensCCL2-Gi1/β1/γ22.92022-08-24doi.org/10.1038/s41421-022-00403-4
7XA3 (No Gprot) AProteinChemokineCCR2Homo sapiensCCL2-2.92022-08-24doi.org/10.1038/s41421-022-00403-4




You can download a compressed (zip) file with structure(s), 3D outputs (as PyMol and VMD scripts) and numerical data files (as csv and plain text files).

Download 7XA3_nogp.zip



You can click to copy the link of this page to easily come back here later

or use this QR code to link and share this page.



You can also  read or  download a guide explaining the meaning of all files and numerical data.