Color ConSurf Grade
      No Conservation data available
      1
      2
      3
      4
      5
      6
      7
      8
      9

Index: hub id, click on each number to highlight the corresponding hub in the 3D visualization.

Hub: the hub being considered.

Avg Int. Strength: the average interaction strength of all the links of the corresponding hub.

Num Of Links: the number of links of the corresponding hub.

Community: the id of the community the link belong to, otherwise 0.

ConSurf: this column reports the ConSurf conservation grades of each hub.

Index Hub Avg Int. Strength Num Of Links Community ConSurf
1R:R:I54 4.4175445
2R:R:V55 5.04404
3R:R:Y58 4.0125407
4R:R:V72 2.695409
5R:R:I76 3.0725407
6R:R:Y89 5.06667607
7R:R:D97 6.135429
8R:R:I111 5.1575404
9R:R:W116 9.305618
10R:R:F118 9.816506
11R:R:I127 3.108514
12R:R:Y131 3.9275414
13R:R:Y132 6.1405
14R:R:E194 4.3431
15R:R:E199 7.1875402
16R:R:C200 7.6275419
17R:R:V202 2.96414
18R:R:F224 4.3625408
19R:R:V228 2.845406
20R:R:Y235 4.84333679
21R:R:F272 3.725429
22R:R:W276 5.5925428
23R:R:Q280 6.92407
24R:R:P292 3.7475404
25R:R:Y309 5.0325406
26R:R:N311 5.295629
27R:R:Y319 4.0525409
28L:L:F1 5.98600
29L:L:F4 4.998510
30L:L:K9 6.86430
   

Color ConSurf Grade
      No Conservation data available
      1
      2
      3
      4
      5
      6
      7
      8
      9

Index: link id, click on each number to highlight the corresponding link in the 3D visualization.

Node1 Node2: the two nodes of the corresponding link.

Recurrence: the relative Recurrence in the pool of shortest paths.

Int. Strength: the interaction strength between the two nodes.

Hub1?, Hub2?: "Yes" if the corresponding node has more than 3 links, otherwise "No".

Community: the id of the community the link belong to, otherwise 0.

ConSurf1, ConSurf2: these columns report the ConSurf conservation grades of the two nodes involved in a link.

Index Node1 Node2 Recurrence Int. Strength Hub1? Hub2? Community ConSurf1 ConSurf2
1R:R:I111 R:R:Y58 33.35294.84YesYes047
2R:R:I54 R:R:Y58 19.39966.04YesYes057
3R:R:I111 R:R:V55 14.60843.07YesYes044
4R:R:T305 R:R:Y58 57.22112.5NoYes057
5R:R:T305 R:R:Y309 92.82292.5NoYes056
6R:R:L104 R:R:Y309 58.47278.21NoYes076
7R:R:C62 R:R:L104 58.55094.76NoNo067
8R:R:C62 R:R:L66 59.90033.17NoNo066
9R:R:L101 R:R:L66 18.47075.54NoNo056
10R:R:G65 R:R:L101 15.43951.71NoNo075
11R:R:L66 R:R:T98 65.3762.95NoNo067
12R:R:D97 R:R:N69 70.05966.73YesNo099
13R:R:N69 R:R:T98 66.48094.39NoNo097
14R:R:D97 R:R:N315 39.50338.08YesNo299
15R:R:N311 R:R:N315 41.89895.45YesNo299
16R:R:L314 R:R:N311 99.27642.75NoYes069
17R:R:I317 R:R:L314 94.87632.85NoNo066
18R:R:F321 R:R:I317 92.64693.77NoNo066
19R:R:F321 R:R:V72 36.6972.62NoYes069
20R:R:I76 R:R:V72 29.21683.07YesYes079
21R:R:F321 R:R:F326 54.27793.22NoNo068
22R:R:F326 R:R:I76 29.54922.51NoYes087
23R:R:F91 R:R:I76 32.09153.77NoYes057
24R:R:F91 R:R:M73 10.82437.46NoNo057
25R:R:F91 R:R:L77 16.20223.65NoNo053
26R:R:L77 R:R:R78 10.82432.43NoNo035
27R:R:F326 R:R:V75 24.72875.24NoNo087
28R:R:I76 R:R:I90 21.5412.94YesNo078
29R:R:T80 R:R:V75 14.07061.59NoNo057
30R:R:D97 R:R:L93 36.20816.79YesNo299
31R:R:L141 R:R:L93 37.88015.54NoNo089
32R:R:L141 R:R:Y319 97.88798.21NoYes089
33R:R:M144 R:R:Y319 69.10142.39NoYes099
34R:R:M144 R:R:Y89 67.06765.99NoYes097
35R:R:N171 R:R:Y89 49.46716.98NoYes077
36R:R:I88 R:R:N171 10.51142.83NoNo067
37R:R:I90 R:R:T86 16.19243.04NoNo088
38R:R:D147 R:R:Y89 10.51146.9NoYes087
39R:R:N171 R:R:N92 37.83128.17NoNo079
40R:R:N92 R:R:T140 10.51145.85NoNo097
41R:R:N92 R:R:W175 25.706512.43NoNo099
42R:R:W175 R:R:Y132 20.719710.61NoYes095
43R:R:N133 R:R:Y132 13.09283.49NoYes085
44R:R:D130 R:R:Y309 59.45056.9NoYes066
45R:R:D130 R:R:T103 59.870911.56NoNo066
46R:R:Q107 R:R:T103 61.60164.25NoNo056
47L:L:F4 R:R:V126 13.13192.62YesNo005
48L:L:F4 R:R:Q107 63.17599.37YesNo005
49R:R:F118 R:R:W116 25.149122.05YesYes068
50L:L:F4 R:R:D110 30.40972.39YesNo004
51R:R:C200 R:R:W116 21.335714.37YesYes198
52L:L:R8 R:R:D110 25.27623.57NoNo004
53R:R:F118 R:R:P117 16.53472.89YesNo063
54L:L:F4 R:R:I127 61.17145.02YesYes104
55R:R:G189 R:R:I127 12.84831.76NoYes054
56R:R:G189 R:R:K124 10.31581.74NoNo056
57R:R:I127 R:R:Y131 81.53912.42YesYes144
58R:R:I127 R:R:V202 11.00033.07YesYes144
59L:L:F1 R:R:Y131 1008.25YesYes004
60L:L:F1 R:R:M134 93.1269.95YesNo007
61R:R:N311 R:R:W276 54.59087.91YesYes298
62R:R:M134 R:R:W276 97.96626.98NoYes078
63R:R:F135 R:R:S223 10.19851.32NoNo066
64R:R:Q280 R:R:S223 13.562110.11YesNo076
65L:L:F1 R:R:Q280 46.33814.68YesYes007
66R:R:M134 R:R:T138 58.71711.51NoNo077
67R:R:P227 R:R:T138 56.24333.5NoNo087
68R:R:F272 R:R:L141 74.60642.44YesNo098
69R:R:F272 R:R:N311 48.46974.83YesYes299
70R:R:R148 R:R:Y319 35.9053.09NoYes099
71R:R:R148 R:R:Y235 34.0964.12NoYes099
72R:R:C153 R:R:Y149 19.55616.72NoNo078
73R:R:C234 R:R:Y149 33.098712.1NoNo078
74R:R:C234 R:R:V230 35.74851.71NoNo077
75R:R:V226 R:R:V230 48.70441.6NoNo057
76R:R:P227 R:R:V226 51.23693.53NoNo085
77R:R:L237 R:R:Y149 11.4117.03NoNo048
78R:R:M238 R:R:Y235 53.5254.79NoYes089
79R:R:I152 R:R:M238 50.4847.29NoNo088
80R:R:I152 R:R:L242 47.57022.85NoNo088
81R:R:C153 R:R:R241 11.19592.79NoNo075
82R:R:V146 R:R:V230 11.4111.6NoNo077
83R:R:F215 R:R:M188 16.85732.49NoNo065
84R:R:M188 R:R:V202 25.05133.04NoYes054
85L:L:K9 R:R:E199 13.053712.15YesYes002
86L:L:R8 R:R:E199 20.533912.79NoYes002
87R:R:M188 R:R:P205 36.70681.68NoNo054
88R:R:I204 R:R:P205 16.61293.39NoNo054
89R:R:P205 R:R:W211 16.61295.4NoNo044
90L:L:F1 R:R:I219 19.8692.51YesNo004
91R:R:F220 R:R:Q280 10.65817.03NoYes057
92R:R:F224 R:R:Q280 39.2495.86YesYes087
93R:R:F224 R:R:I225 11.10793.77YesNo084
94R:R:F272 R:R:V228 42.43672.62YesYes096
95R:R:F224 R:R:V228 42.44653.93YesYes086
96R:R:F224 R:R:T277 13.92393.89YesNo086
97R:R:S232 R:R:V228 38.60371.62NoYes046
98R:R:S232 R:R:V269 35.82671.62NoNo047
99R:R:V269 R:R:Y235 33.81252.52NoYes079
100R:R:L242 R:R:L248 22.98825.54NoNo083
101R:R:L248 R:R:L258 19.76142.77NoNo036
102R:R:I261 R:R:L242 22.46021.43NoNo078
103R:R:I261 R:R:N257 19.5172.83NoNo075
104R:R:N257 R:R:R260 16.27073.62NoNo058
105R:R:F282 R:R:L301 36.217910.96NoNo054
106R:R:L301 R:R:T305 38.93612.95NoNo045
107R:R:F282 R:R:Q286 33.72457.03NoNo054
108R:R:P292 R:R:Q286 25.65769.47YesNo044
109L:L:S10 R:R:P292 11.68481.78NoYes004
110R:R:E324 R:R:R260 13.00482.33NoNo058
111R:R:R302 R:R:V298 10.96121.31NoNo043
112R:R:D323 R:R:T86 10.80471.45NoNo088
113R:R:F215 R:R:I219 17.73746.28NoNo064
114R:R:V202 R:R:Y131 17.5322.52YesYes144
115R:R:C200 R:R:I127 25.47183.27YesYes194
116R:R:F272 R:R:W276 44.46075.01YesYes298
Download PSN data

2D representation of the global metapath, ligand(s) interactions and
histograms of path distribution according to several parameters
(click on the image to enlarge it 🔍):

A 2D representation of the global communication in the network.

ConSurf Conservation Grade (See documentation): 

 n/a   1    2    3    4    5    6    7    8    9  

Number of shortest communication paths as a function of the average residue correlation.

Number of shortest communication paths as a function of the average interaction strength of their links.

Number of shortest communication paths as a function of the % of hub nodes in each path.

Number of shortest communication paths as a function of the number of nodes in each path.

Number of shortest communication paths as a function of the % of correlated nodes in each path.


2D representation of the interactions of this orthosteric/allosteric ligand.


Links and nodes colored according to ConSurf Conservation Grade (See documentation): 

 n/a   1    2    3    4    5    6    7    8    9  

Node1 Node2 LinkStrength Comm IsNode1Hub? IsNode2Hub? Node1Cons Node2Cons Node1Shell Node2Shell
R:R:Q107 R:R:T103 4.25 0 No No 5 6 1 2
R:R:F106 R:R:V126 2.62 0 No No 6 5 2 1
L:L:F4 R:R:Q107 9.37 1 Yes No 0 5 0 1
R:R:D110 R:R:W116 8.93 0 No Yes 4 8 1 2
L:L:F4 R:R:D110 2.39 1 Yes No 0 4 0 1
L:L:R8 R:R:D110 3.57 0 No No 0 4 0 1
R:R:C123 R:R:W116 5.22 1 No Yes 9 8 2 2
R:R:V126 R:R:W116 2.45 0 No Yes 5 8 1 2
R:R:C200 R:R:W116 14.37 1 Yes Yes 9 8 1 2
R:R:C123 R:R:C200 7.28 1 No Yes 9 9 2 1
L:L:F4 R:R:V126 2.62 1 Yes No 0 5 0 1
R:R:I127 R:R:Y131 2.42 1 Yes Yes 4 4 1 1
R:R:C200 R:R:I127 3.27 1 Yes Yes 9 4 1 1
R:R:I127 R:R:V202 3.07 1 Yes Yes 4 4 1 2
L:L:F4 R:R:I127 5.02 1 Yes Yes 0 4 0 1
R:R:V185 R:R:Y131 2.52 1 No Yes 4 4 2 1
R:R:V202 R:R:Y131 2.52 1 Yes Yes 4 4 2 1
L:L:F1 R:R:Y131 8.25 0 Yes Yes 0 4 0 1
R:R:M134 R:R:W276 6.98 0 No Yes 7 8 1 2
L:L:F1 R:R:M134 9.95 0 Yes No 0 7 0 1
R:R:V185 R:R:V202 3.21 1 No Yes 4 4 2 2
R:R:F215 R:R:V185 3.93 0 No No 6 4 2 2
R:R:E194 R:R:Q192 5.1 3 Yes No 1 2 1 1
L:L:K9 R:R:Q192 2.71 3 Yes No 0 2 0 1
L:L:K9 R:R:E194 5.4 3 Yes Yes 0 1 0 1
L:L:K13 R:R:E194 5.4 3 No Yes 0 1 0 1
R:R:E199 R:R:L201 2.65 0 Yes No 2 3 1 2
L:L:R8 R:R:E199 12.79 0 No Yes 0 2 0 1
L:L:K9 R:R:E199 12.15 3 Yes Yes 0 2 0 1
L:L:F4 R:R:C200 5.59 1 Yes Yes 0 9 0 1
R:R:F215 R:R:I219 6.28 0 No No 6 4 2 1
L:L:F1 R:R:I219 2.51 0 Yes No 0 4 0 1
R:R:F220 R:R:Q280 7.03 0 No Yes 5 7 2 1
R:R:Q280 R:R:S223 10.11 0 Yes No 7 6 1 2
R:R:F224 R:R:Q280 5.86 0 Yes Yes 8 7 2 1
L:L:F1 R:R:V279 2.62 0 Yes No 0 6 0 1
L:L:F1 R:R:Q280 4.68 0 Yes Yes 0 7 0 1
R:R:F282 R:R:Q286 7.03 0 No No 5 4 2 1
L:L:F1 R:R:V283 7.87 0 Yes No 0 5 0 1
R:R:P292 R:R:Q286 9.47 0 Yes No 4 4 1 1
L:L:T5 R:R:Q286 5.67 0 No No 0 4 0 1
L:L:S10 R:R:Q291 7.22 0 No No 0 6 0 1
L:L:L14 R:R:S293 6.01 0 No No 0 1 0 1
R:R:A297 R:R:P292 1.87 0 No Yes 3 4 2 1
L:L:A7 R:R:P292 1.87 0 No Yes 0 4 0 1
R:R:G308 R:R:V279 1.84 0 No No 7 6 2 1
L:L:G2 R:R:V283 1.84 0 No No 0 5 0 1
L:L:S10 R:R:P292 1.78 0 No Yes 0 4 0 1
R:R:G189 R:R:I127 1.76 0 No Yes 5 4 2 1
L:L:A11 R:R:V298 1.7 0 No No 0 3 0 1
R:R:M134 R:R:T138 1.51 0 No No 7 7 1 2
L:L:R8 R:R:G114 1.5 0 No No 0 4 0 1
L:L:L14 R:R:Q291 1.33 0 No No 0 6 0 1
R:R:R302 R:R:V298 1.31 0 No No 4 3 2 1
R:R:D195 R:R:E194 1.3 0 No Yes 1 1 2 1
L:L:R12 R:R:E199 1.16 0 No Yes 0 2 0 1

Location and physicochemical properties of the interaction partners of this ligand

Interactions of this ligand

Similarities between the interactions of this ligand and those of other networks

PDB Summary
PDB 8F7X_nogp
Class
SubFamily
Type
SubType
Species
Ligand
Other Ligand(s)
Protein Partners
PDB Resolution
Date
D.O.I.
Net Summary
Imin 2.39
Number of Linked Nodes 264
Number of Links 280
Number of Hubs 30
Number of Links mediated by Hubs 111
Number of Communities 7
Number of Nodes involved in Communities 30
Number of Links involved in Communities 35
Path Summary
Number Of Nodes in MetaPath 117
Number Of Links MetaPath 116
Number of Shortest Paths 39667
Length Of Smallest Path 3
Average Path Length 13.731
Length of Longest Path 31
Minimum Path Strength 1.4
Average Path Strength 4.95771
Maximum Path Strength 18.21
Minimum Path Correlation 0.7
Average Path Correlation 0.920257
Maximum Path Correlation 0.99
Minimum % Of Corr. Nodes 4
Average % Of Corr. Nodes 46.2241
Maximum % Of Corr. Nodes 100
Minimum Path Hubs % 0
Average Path Hubs % 34.9711
Maximum Path Hubs % 100
AnnotationTypeLinks
Gene OntologyMolecular Function
Gene OntologyBiological Process
Gene OntologyCellular Component
SCOP2Domain Identifier• Transducin (heterotrimeric G protein), gamma chain   • Ras-like P-loop GTPases   • G protein-coupled receptor-like
SCOP2Family Identifier• Transducin (heterotrimeric G protein), gamma chain   • Ras-like P-loop GTPases   • G protein-coupled receptor-like
Membrane Protein Annotations-• Orientations of Proteins in Membranes database (OPM)   • Protein Data Bank of Transmembrane Proteins (PDBTM)   • MemProtMD


Details about the values in these tables can be found in the corresponding documentation page .
PDBsumOpen PDBsum Page
ChainR
ProteinReceptor
UniProtP41146
Sequence
>8F7X_nogp_Chain_R
GLKVTIVGL YLAVCVGGL LGNCLVMYV ILRHTKMKT ATNIYIFNL 
ALADTLVLL TLPFQGTDI LLGFWPFGN ALCKTVIAI DYYNMFTST 
FTLTAMSVD RYVAICHPI RALDVRTSS KAQAVNVAI WALASVVGV 
PVAIMGSAQ VEDEEIECL VEIPTPQDY WGPVFAICI FLFSFIVPV 
LVISVCYSL MIRRLRGVR LLSGSREKD RNLRRITRL VLVVVAVFV 
GCWTPVQVF VLAQGLGVQ PSSETAVAI LRFCTALGY VNSCLNPIL 
YAFLDENFK ACFRKF


Click on each residue to open a popup with some information about it.

ConSurf Conservation Grade (See documentation): 

 n/a   1    2    3    4    5    6    7    8    9  




This receptor, from the same or other species and bound to the same or other ligands, is also present in the following networks:
Show PDB Class SubFamily Type SubType Species Orthosteric Ligand Other Ligand(s) Protein Partners Resolution Date DOI
8F7XAPeptideOpioidNOPHomo sapiensNociceptin-Gi1/β1/γ23.282022-12-14doi.org/10.1016/j.cell.2022.12.026
8F7X (No Gprot) APeptideOpioidNOPHomo sapiensNociceptin-3.282022-12-14doi.org/10.1016/j.cell.2022.12.026
5DHGAPeptideOpioidNOPHomo sapiensC-35--32015-10-21doi.org/10.1016/j.str.2015.07.024
5DHHAPeptideOpioidNOPHomo sapiensSB-612111--32015-10-21doi.org/10.1016/j.str.2015.07.024
4EA3APeptideOpioidNOPHomo sapiensPubChem 10296561--3.012012-04-25doi.org/10.1038/nature11085




You can download a compressed (zip) file with structure(s), 3D outputs (as PyMol and VMD scripts) and numerical data files (as csv and plain text files).

Download 8F7X_nogp.zip



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