Color ConSurf Grade
      No Conservation data available
      1
      2
      3
      4
      5
      6
      7
      8
      9

Index: hub id, click on each number to highlight the corresponding hub in the 3D visualization.

Hub: the hub being considered.

Avg Int. Strength: the average interaction strength of all the links of the corresponding hub.

Num Of Links: the number of links of the corresponding hub.

Community: the id of the community the link belong to, otherwise 0.

ConSurf: this column reports the ConSurf conservation grades of each hub.

Index Hub Avg Int. Strength Num Of Links Community ConSurf
1R:R:Q33 5.285415
2R:R:Y34 5.3675414
3R:R:L36 3.86414
4R:R:Y37 6.42833616
5R:R:Y41 4.85518
6R:R:F45 5.49407
7R:R:I70 3.7925407
8R:R:F72 6.1275407
9R:R:L76 3.4225429
10R:R:D80 4.018529
11R:R:H83 5.4225407
12R:R:R90 8.56616
13R:R:Y94 5.45615
14R:R:W99 5.538518
15R:R:F123 5.52627
16R:R:L124 4.5725408
17R:R:W157 3.65529
18R:R:R171 10.35414
19R:R:T173 5.04415
20R:R:D174 6.7275411
21R:R:C181 8.1875419
22R:R:F182 5.48429714
23R:R:I199 3.35565
24R:R:K220 4.958544
25R:R:L242 5.2075476
26R:R:N262 2.4375405
27R:R:F263 5.3225467
28R:R:M268 2.904504
29R:R:E271 5.145401
30R:R:H287 10.796515
31R:R:P288 4.4425415
32R:R:Y305 3.926539
33R:R:Y306 2.83833607
34R:R:F307 2.4725407
35L:L:?1 5.895712110
   

Color ConSurf Grade
      No Conservation data available
      1
      2
      3
      4
      5
      6
      7
      8
      9

Index: link id, click on each number to highlight the corresponding link in the 3D visualization.

Node1 Node2: the two nodes of the corresponding link.

Recurrence: the relative Recurrence in the pool of shortest paths.

Int. Strength: the interaction strength between the two nodes.

Hub1?, Hub2?: "Yes" if the corresponding node has more than 3 links, otherwise "No".

Community: the id of the community the link belong to, otherwise 0.

ConSurf1, ConSurf2: these columns report the ConSurf conservation grades of the two nodes involved in a link.

Index Node1 Node2 Recurrence Int. Strength Hub1? Hub2? Community ConSurf1 ConSurf2
1R:R:C277 R:R:P278 10.35821.88NoNo072
2R:R:P278 R:R:S276 13.79155.34NoNo024
3R:R:S276 R:R:V279 17.2143.23NoNo041
4R:R:V279 R:R:V280 20.6261.6NoNo013
5R:R:V269 R:R:V280 27.41796.41NoNo023
6R:R:I274 R:R:V269 30.79796.14NoNo032
7R:R:I274 R:R:M268 34.16722.92NoYes034
8R:R:L195 R:R:M268 27.1734.24NoYes044
9R:R:E271 R:R:L195 28.70075.3YesNo014
10R:R:E271 R:R:Y187 61.255111.22YesNo015
11R:R:R171 R:R:Y187 60.376925.72YesNo045
12L:L:?1 R:R:R171 63.93786.54YesYes104
13L:L:?1 R:R:Y37 11.02893.61YesYes106
14R:R:L36 R:R:P288 18.4011.64YesYes145
15R:R:F289 R:R:L36 12.37036.09NoYes054
16R:R:I273 R:R:M268 27.00272.92NoYes014
17R:R:E271 R:R:I273 28.53042.73YesNo011
18L:L:?1 R:R:H287 25.84778.9YesYes105
19R:R:H287 R:R:P288 11.5083.05YesYes155
20R:R:I199 R:R:M268 13.61582.92YesYes054
21R:R:F263 R:R:Y259 11.00236.19YesNo077
22R:R:C290 R:R:Y259 13.51472.69NoNo067
23R:R:C290 R:R:N262 14.79753.15NoYes065
24R:R:H287 R:R:N262 20.04583.83YesYes055
25L:L:?1 R:R:Y41 18.24674.51YesYes108
26L:L:?1 R:R:R90 15.441514.96YesYes106
27R:R:K113 R:R:R90 27.907611.14NoYes066
28R:R:H83 R:R:K113 26.94956.55YesNo076
29R:R:C298 R:R:H83 25.03337.37NoYes087
30R:R:L87 R:R:Y41 21.01458.21NoYes088
31R:R:F45 R:R:L87 19.15692.44YesNo078
32R:R:C298 R:R:D80 30.094.67NoYes089
33L:L:?1 R:R:C122 1002.44YesNo006
34R:R:C122 R:R:I156 99.78713.27NoNo067
35R:R:F123 R:R:I156 99.22296.28YesNo077
36R:R:F123 R:R:L76 64.72032.44YesYes279
37R:R:D80 R:R:L76 15.71832.71YesYes299
38R:R:D80 R:R:N52 17.36842.69YesNo099
39R:R:N52 R:R:P302 13.72768.15NoNo099
40R:R:A55 R:R:Y306 14.55794NoYes087
41R:R:Y305 R:R:Y306 33.22512.98YesYes097
42R:R:L124 R:R:Y305 48.13433.52YesYes089
43R:R:L124 R:R:L76 51.88695.54YesYes089
44R:R:A55 R:R:F307 12.77482.77NoYes087
45R:R:L59 R:R:Y306 25.03332.34NoYes067
46R:R:I70 R:R:L59 19.84352.85YesNo076
47R:R:F62 R:R:I70 10.90653.77NoYes057
48R:R:F123 R:R:F72 79.56032.14YesYes077
49R:R:D149 R:R:F72 73.41788.36NoYes077
50R:R:H83 R:R:N116 16.92133.83YesNo078
51R:R:F182 R:R:L89 17.27792.44YesNo146
52L:L:?1 R:R:F182 39.5062.81YesYes104
53R:R:L89 R:R:W99 15.57463.42NoYes168
54R:R:C106 R:R:F182 17.40575.59NoYes194
55R:R:C106 R:R:W99 15.50013.92NoYes198
56R:R:C181 R:R:F182 20.89748.38YesYes194
57R:R:C181 R:R:W99 15.952513.06YesYes198
58R:R:F101 R:R:W99 35.2855.01NoYes078
59R:R:F101 R:R:P100 29.42997.22NoNo074
60R:R:P100 R:R:Y92 11.80074.17NoNo044
61R:R:L185 R:R:R171 15.10094.86NoYes154
62R:R:H98 R:R:P100 11.80076.1NoNo044
63R:R:L115 R:R:N116 13.62114.12NoNo058
64R:R:L115 R:R:Y111 10.27843.52NoNo055
65L:L:?1 R:R:Y118 25.13975.41YesNo007
66R:R:H260 R:R:Y118 12.90796.53NoNo087
67R:R:I121 R:R:Y118 11.47072.42NoNo087
68R:R:D149 R:R:W144 68.983910.05NoNo074
69R:R:R140 R:R:W144 64.54992NoNo054
70R:R:F133 R:R:R140 63.37893.21NoNo055
71R:R:F133 R:R:L129 62.19734.87NoNo056
72R:R:C217 R:R:L129 61.00493.17NoNo066
73R:R:C132 R:R:C217 31.34613.64NoNo076
74R:R:C132 R:R:K220 27.3543.23NoYes074
75R:R:C217 R:R:W216 28.48252.61NoNo064
76R:R:K220 R:R:W216 27.15188.12YesNo044
77R:R:F207 R:R:H260 11.470711.31NoNo088
78R:R:I223 R:R:K220 43.16812.91NoYes444
79R:R:I223 R:R:Q227 40.41624.12NoNo044
80R:R:P228 R:R:Q227 37.57391.58NoNo064
81R:R:P228 R:R:R238 31.84654.32NoNo067
82R:R:L225 R:R:R238 26.09786.07NoNo087
83R:R:L225 R:R:L242 20.29592.77NoYes086
84R:R:F246 R:R:L242 11.83274.87NoYes746
85R:R:C248 R:R:Y305 13.57325.38NoYes089
86R:R:C248 R:R:L304 12.06694.76NoNo087
87R:R:P302 R:R:Y306 11.95512.78NoYes097
88R:R:F182 R:R:R90 11.965711.76YesYes146
Download PSN data

2D representation of the global metapath, ligand(s) interactions and
histograms of path distribution according to several parameters
(click on the image to enlarge it 🔍):

A 2D representation of the global communication in the network.

ConSurf Conservation Grade (See documentation): 

 n/a   1    2    3    4    5    6    7    8    9  

Number of shortest communication paths as a function of the average residue correlation.

Number of shortest communication paths as a function of the average interaction strength of their links.

Number of shortest communication paths as a function of the % of hub nodes in each path.

Number of shortest communication paths as a function of the number of nodes in each path.

Number of shortest communication paths as a function of the % of correlated nodes in each path.


2D representation of the interactions of this orthosteric/allosteric ligand.


Links and nodes colored according to ConSurf Conservation Grade (See documentation): 

 n/a   1    2    3    4    5    6    7    8    9  

Node1 Node2 LinkStrength Comm IsNode1Hub? IsNode2Hub? Node1Cons Node2Cons Node1Shell Node2Shell
R:R:Q33 R:R:Y34 4.51 1 Yes Yes 5 4 2 2
R:R:Q33 R:R:Y37 9.02 1 Yes Yes 5 6 2 1
R:R:P288 R:R:Q33 4.74 1 Yes Yes 5 5 2 2
R:R:Y34 R:R:Y94 9.93 1 Yes Yes 4 5 2 1
R:R:A183 R:R:Y34 2.67 1 No Yes 5 4 2 2
R:R:Y37 R:R:Y41 3.97 1 Yes Yes 6 8 1 1
R:R:Y37 R:R:Y94 8.94 1 Yes Yes 6 5 1 1
R:R:P288 R:R:Y37 8.34 1 Yes Yes 5 6 2 1
R:R:L291 R:R:Y37 4.69 1 No Yes 6 6 1 1
L:L:?1 R:R:Y37 3.61 1 Yes Yes 0 6 0 1
R:R:L87 R:R:Y41 8.21 0 No Yes 8 8 2 1
R:R:R90 R:R:Y41 5.14 1 Yes Yes 6 8 1 1
L:L:?1 R:R:Y41 4.51 1 Yes Yes 0 8 0 1
R:R:R90 R:R:S86 5.27 1 Yes No 6 6 1 2
R:R:C109 R:R:L89 3.17 1 No No 5 6 2 2
R:R:F182 R:R:L89 2.44 1 Yes No 4 6 1 2
R:R:R90 R:R:Y94 3.09 1 Yes Yes 6 5 1 1
R:R:K113 R:R:R90 11.14 0 No Yes 6 6 2 1
R:R:F182 R:R:R90 11.76 1 Yes Yes 4 6 1 1
L:L:?1 R:R:R90 14.96 1 Yes Yes 0 6 0 1
R:R:A183 R:R:Y94 4 1 No Yes 5 5 2 1
L:L:?1 R:R:Y94 5.41 1 Yes Yes 0 5 0 1
R:R:C106 R:R:C181 7.28 1 No Yes 9 9 2 2
R:R:C106 R:R:F182 5.59 1 No Yes 9 4 2 1
R:R:C109 R:R:F182 4.19 1 No Yes 5 4 2 1
R:R:F110 R:R:R171 4.28 1 No Yes 5 4 1 1
R:R:F110 R:R:F182 3.22 1 No Yes 5 4 1 1
L:L:?1 R:R:F110 4.69 1 Yes No 0 5 0 1
R:R:F167 R:R:Y114 3.09 1 No No 4 5 1 1
L:L:?1 R:R:Y114 12.63 1 Yes No 0 5 0 1
R:R:H260 R:R:Y118 6.53 0 No No 8 7 2 1
L:L:?1 R:R:Y118 5.41 1 Yes No 0 7 0 1
R:R:C122 R:R:I156 3.27 0 No No 6 7 1 2
L:L:?1 R:R:C122 2.44 1 Yes No 0 6 0 1
L:L:?1 R:R:V160 5.73 1 Yes No 0 8 0 1
R:R:M198 R:R:P166 3.35 1 No No 5 8 1 1
L:L:?1 R:R:P166 2.53 1 Yes No 0 8 0 1
L:L:?1 R:R:F167 14.06 1 Yes No 0 4 0 1
R:R:L185 R:R:R171 4.86 1 No Yes 5 4 2 1
R:R:R171 R:R:Y187 25.72 1 Yes No 4 5 1 2
L:L:?1 R:R:R171 6.54 1 Yes Yes 0 4 0 1
R:R:C181 R:R:F182 8.38 1 Yes Yes 9 4 2 1
L:L:?1 R:R:F182 2.81 1 Yes Yes 0 4 0 1
R:R:K270 R:R:Y187 13.14 0 No No 3 5 2 2
L:L:?1 R:R:M198 4.35 1 Yes No 0 5 0 1
L:L:?1 R:R:A202 4.85 1 Yes No 0 6 0 1
R:R:H287 R:R:N262 3.83 1 Yes Yes 5 5 1 2
R:R:K270 R:R:Y266 9.55 0 No No 3 5 2 1
R:R:H287 R:R:Y266 30.49 1 Yes No 5 5 1 1
L:L:?1 R:R:Y266 7.22 1 Yes No 0 5 0 1
R:R:H287 R:R:P288 3.05 1 Yes Yes 5 5 1 2
R:R:H287 R:R:L291 7.71 1 Yes No 5 6 1 1
L:L:?1 R:R:H287 8.9 1 Yes Yes 0 5 0 1
L:L:?1 R:R:L291 9.59 1 Yes No 0 6 0 1
R:R:I91 R:R:Y41 2.42 0 No Yes 7 8 2 1
R:R:I121 R:R:Y118 2.42 0 No No 8 7 2 1
R:R:C164 R:R:V160 1.71 0 No No 7 8 2 1
R:R:L165 R:R:P166 1.64 0 No No 4 8 2 1
R:R:A38 R:R:Y94 1.33 0 No Yes 5 5 2 1
L:L:?1 R:R:A163 1.21 1 Yes No 0 5 0 1
L:L:?1 R:R:A205 1.21 1 Yes No 0 4 0 1
L:L:?1 R:R:V159 1.15 1 Yes No 0 3 0 1

Location and physicochemical properties of the interaction partners of this ligand

Interactions of this ligand

Similarities between the interactions of this ligand and those of other networks

PDB Summary
PDB 8KGG_nogp
Class
SubFamily
Type
SubType
Species
Ligand
Other Ligand(s)
Protein Partners
PDB Resolution
Date
D.O.I.
Net Summary
Imin 2.44
Number of Linked Nodes 257
Number of Links 293
Number of Hubs 35
Number of Links mediated by Hubs 147
Number of Communities 7
Number of Nodes involved in Communities 54
Number of Links involved in Communities 79
Path Summary
Number Of Nodes in MetaPath 89
Number Of Links MetaPath 88
Number of Shortest Paths 48987
Length Of Smallest Path 3
Average Path Length 13.2578
Length of Longest Path 35
Minimum Path Strength 1.21
Average Path Strength 5.29108
Maximum Path Strength 20.02
Minimum Path Correlation 0.7
Average Path Correlation 0.924868
Maximum Path Correlation 0.99
Minimum % Of Corr. Nodes 3.84615
Average % Of Corr. Nodes 48.5206
Maximum % Of Corr. Nodes 100
Minimum Path Hubs % 0
Average Path Hubs % 41.8451
Maximum Path Hubs % 100
AnnotationTypeLinks
Gene OntologyMolecular Function
Gene OntologyBiological Process
Gene OntologyCellular Component
SCOP2Domain Identifier• Transducin (heterotrimeric G protein), gamma chain
SCOP2Family Identifier• Transducin (heterotrimeric G protein), gamma chain
Membrane Protein Annotations-• Orientations of Proteins in Membranes database (OPM)   • Protein Data Bank of Transmembrane Proteins (PDBTM)   • MemProtMD


Details about the values in these tables can be found in the corresponding documentation page .
CodeWJS
PDB ResiduesL:L:?1
Environment DetailsOpen EMBL-EBI Page
CodeWJS
Name(2~{S})-2-$l^{4}-azanyl-3-[[(2~{R})-3-octadecanoyloxy-2-oxidanyl-propoxy]-oxidanyl-oxidanylidene-$l^{6}-phosphanyl]oxy-propanoic acid
Synonyms
Identifier
FormulaC24 H20 N O9 P
Molecular Weight497.391
SMILES
PubChem
Formal Charge0
Total Atoms55
Total Chiral Atoms2
Total Bonds54
Total Aromatic Bonds0

PDBsumOpen PDBsum Page
ChainR
ProteinReceptor
UniProtO00398
Sequence
>8KGG_nogp_Chain_R
CNVTNVKFQ YSLYATTYI LIFIPGLLA NSAALWVLC RFISKKNKA 
IIFMINLSV ADLAHVLSL PLRIYYYIS HHWPFQRAL CLLCFYLKY 
LNMYASICF LTCISLQRC FFLLKPFRA RDWKRRYDV GISAAIWIV 
VGTACLPFP ILRSTDLNN NKSCFADLG YKQMNAVAL VGMITVAEL 
AGFVIPVII IAWCTWKTT ISLRQPPMA FQGISERQK ALRMVFMCA 
AVFFICFTP YHINFIFYT MVKETIISS CPVVRIALY FHPFCLCLA 
SLCCLLDPI LYYFMASEF RD


Click on each residue to open a popup with some information about it.

ConSurf Conservation Grade (See documentation): 

 n/a   1    2    3    4    5    6    7    8    9  




This receptor, from the same or other species and bound to the same or other ligands, is also present in the following networks:
Show PDB Class SubFamily Type SubType Species Orthosteric Ligand Other Ligand(s) Protein Partners Resolution Date DOI
8KGGANucleotideP2YP2Y10Homo sapiensLPS-chim(NtGi2-G13)/β1/γ23.062024-07-31doi.org/10.1016/j.chembiol.2024.08.005
8KGG (No Gprot) ANucleotideP2YP2Y10Homo sapiensLPS-3.062024-07-31doi.org/10.1016/j.chembiol.2024.08.005




You can download a compressed (zip) file with structure(s), 3D outputs (as PyMol and VMD scripts) and numerical data files (as csv and plain text files).

Download 8KGG_nogp.zip



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