Color ConSurf Grade
      No Conservation data available
      1
      2
      3
      4
      5
      6
      7
      8
      9

Index: hub id, click on each number to highlight the corresponding hub in the 3D visualization.

Hub: the hub being considered.

Avg Int. Strength: the average interaction strength of all the links of the corresponding hub.

Num Of Links: the number of links of the corresponding hub.

Community: the id of the community the link belong to, otherwise 0.

ConSurf: this column reports the ConSurf conservation grades of each hub.

Index Hub Avg Int. Strength Num Of Links Community ConSurf
1R:R:V51 4.05435
2R:R:N61 6.545419
3R:R:N65 7.84519
4R:R:H75 3.8325444
5R:R:I82 3.91408
6R:R:L85 3.0825406
7R:R:N92 6.3725418
8R:R:S93 6.195419
9R:R:T115 3.595403
10R:R:F123 5.2675405
11R:R:Y125 5.474516
12R:R:Y126 4.46515
13R:R:L127 4.3625405
14R:R:Y128 12.01419
15R:R:Y130 6.6275418
16R:R:L131 9.0225417
17R:R:F134 3.754516
18R:R:Y144 4.6575408
19R:R:W154 9.546505
20R:R:G161 2.225407
21R:R:W169 5.8525410
22R:R:D188 2.195401
23R:R:Y197 6.73404
24R:R:W207 10.11524
25R:R:P223 5.0475419
26R:R:L227 4.1575408
27R:R:F260 8.8325419
28R:R:F263 5.55833618
29R:R:Y267 7.672517
30R:R:D274 8.1075455
31R:R:I292 3.9275405
32R:R:Q303 7.992518
33R:R:Y306 6.435619
34R:R:S307 7.91418
35R:R:V310 4.814519
36R:R:I313 4.135418
37R:R:Y314 4.74429719
38R:R:M325 4.075405
   

Color ConSurf Grade
      No Conservation data available
      1
      2
      3
      4
      5
      6
      7
      8
      9

Index: link id, click on each number to highlight the corresponding link in the 3D visualization.

Node1 Node2: the two nodes of the corresponding link.

Recurrence: the relative Recurrence in the pool of shortest paths.

Int. Strength: the interaction strength between the two nodes.

Hub1?, Hub2?: "Yes" if the corresponding node has more than 3 links, otherwise "No".

Community: the id of the community the link belong to, otherwise 0.

ConSurf1, ConSurf2: these columns report the ConSurf conservation grades of the two nodes involved in a link.

Index Node1 Node2 Recurrence Int. Strength Hub1? Hub2? Community ConSurf1 ConSurf2
1R:R:L301 R:R:N50 19.63592.75NoNo054
2R:R:I53 R:R:L301 21.07374.28NoNo055
3R:R:I53 R:R:I57 22.49992.94NoNo057
4R:R:I57 R:R:L305 25.31744.28NoNo074
5R:R:F263 R:R:L305 30.81346.09YesNo084
6R:R:F263 R:R:Y306 45.85194.13YesYes189
7R:R:C264 R:R:Y306 38.84866.72NoYes199
8R:R:C264 R:R:Q303 63.77763.05NoYes198
9R:R:Q303 R:R:Y267 11.403620.29YesYes187
10R:R:T299 R:R:Y267 17.38073.75NoYes087
11R:R:L270 R:R:T299 13.5665.9NoNo058
12R:R:L54 R:R:N50 12.27324.12NoNo074
13R:R:E103 R:R:L54 10.762.65NoNo067
14R:R:S97 R:R:V62 10.54554.85NoNo065
15R:R:N61 R:R:S97 13.15445.96YesNo096
16R:R:S93 R:R:V310 13.90234.85YesYes199
17R:R:V310 R:R:Y306 45.86938.83YesYes199
18R:R:Y128 R:R:Y306 12.1922.98YesYes199
19R:R:V310 R:R:Y314 25.19573.79YesYes199
20R:R:F321 R:R:Y314 18.79536.19NoYes089
21R:R:F72 R:R:L87 16.574919.49NoNo066
22R:R:F72 R:R:I84 29.63072.51NoNo066
23R:R:G161 R:R:I84 42.5013.53YesNo076
24R:R:G161 R:R:L85 25.78121.71YesYes076
25R:R:C138 R:R:L85 46.77373.17NoYes066
26R:R:C138 R:R:L164 48.17674.76NoNo065
27R:R:L141 R:R:L164 49.49274.15NoNo055
28R:R:F230 R:R:L141 93.193812.18NoNo085
29R:R:F230 R:R:S140 96.69557.93NoNo089
30R:R:S140 R:R:Y231 97.83768.9NoNo099
31R:R:L227 R:R:Y231 1005.86YesNo089
32R:R:L227 R:R:V136 98.10424.47YesNo088
33R:R:F260 R:R:V136 99.0559.18YesNo098
34R:R:C264 R:R:F260 25.60739.78NoYes199
35R:R:G161 R:R:L160 25.43341.71YesNo073
36R:R:L160 R:R:W154 26.86535.69NoYes035
37R:R:L145 R:R:W154 35.28323.42NoYes065
38R:R:L141 R:R:L145 43.84026.92NoNo056
39R:R:F220 R:R:H268 10.765816.97NoNo099
40R:R:L87 R:R:T69 13.28194.42NoNo066
41R:R:I71 R:R:R324 10.45868.77NoNo065
42R:R:F321 R:R:I71 11.91375.02NoNo086
43R:R:I82 R:R:V142 20.78964.61YesNo089
44R:R:L85 R:R:V142 22.49992.98YesNo069
45R:R:I82 R:R:R143 12.21523.76YesNo089
46R:R:D132 R:R:N92 21.45055.39NoYes198
47R:R:D132 R:R:Y306 21.41574.6NoYes199
48R:R:L131 R:R:N92 17.148813.73YesYes178
49R:R:L127 R:R:L131 14.25015.54YesYes057
50R:R:L127 R:R:S176 11.2763YesNo057
51R:R:C196 R:R:M106 15.61833.24NoNo096
52R:R:C196 R:R:R183 19.30556.96NoNo096
53R:R:I122 R:R:R183 21.073713.78NoNo066
54R:R:I122 R:R:Y126 22.96946.04NoYes065
55R:R:Y125 R:R:Y126 55.20322.98YesYes165
56R:R:L117 R:R:M106 11.89054.24NoNo056
57R:R:S184 R:R:T115 11.92534.8NoYes043
58R:R:N199 R:R:S184 13.87334.47NoNo044
59R:R:N199 R:R:V186 15.80964.43NoNo041
60R:R:V186 R:R:Y197 17.73443.79NoYes014
61R:R:T204 R:R:Y197 36.34413.75NoYes034
62R:R:A200 R:R:T204 39.9271.68NoNo053
63R:R:A200 R:R:H182 41.7015.85NoNo055
64R:R:H182 R:R:W207 43.196725.39NoYes254
65R:R:V211 R:R:W207 51.93928.58NoYes054
66R:R:V211 R:R:Y126 55.16843.79NoYes055
67R:R:Y126 R:R:Y130 29.16116.95YesYes158
68R:R:F134 R:R:Y130 45.45774.13YesYes168
69R:R:L175 R:R:Y130 32.338112.89NoYes058
70R:R:F260 R:R:I133 49.72465.02YesNo198
71R:R:R143 R:R:R247 10.45868.53NoNo094
72R:R:A218 R:R:L175 30.98153.15NoNo045
73R:R:M195 R:R:Y197 11.92534.79NoYes034
74R:R:R279 R:R:T213 26.824712.94NoNo034
75R:R:T213 R:R:T217 28.23351.57NoNo044
76R:R:A218 R:R:T217 29.61331.68NoNo044
77R:R:D274 R:R:I292 10.91664.2YesYes055
78R:R:I292 R:R:L277 16.83588.56YesNo053
79R:R:I282 R:R:L277 18.31992.85NoNo033
80R:R:I282 R:R:L276 19.78092.85NoNo035
81R:R:L276 R:R:W281 22.6684.56NoNo052
82R:R:R279 R:R:W281 24.09428NoNo032
83R:R:F260 R:R:Y306 62.473211.35YesYes199
84R:R:Q303 R:R:Y125 50.56534.51YesYes186
85R:R:F134 R:R:I133 45.63163.77YesNo168
Download PSN data

2D representation of the global metapath, ligand(s) interactions and
histograms of path distribution according to several parameters
(click on the image to enlarge it 🔍):

A 2D representation of the global communication in the network.

ConSurf Conservation Grade (See documentation): 

 n/a   1    2    3    4    5    6    7    8    9  

Number of shortest communication paths as a function of the average residue correlation.

Number of shortest communication paths as a function of the average interaction strength of their links.

Number of shortest communication paths as a function of the % of hub nodes in each path.

Number of shortest communication paths as a function of the number of nodes in each path.

Number of shortest communication paths as a function of the % of correlated nodes in each path.


PDB Summary
PDB 8W1A
Class A
SubFamily Other
Type Uclassified
SubType ORF74
Species Human Gammaherpesvirus 8
Ligand -
Other Ligand(s) -
Protein Partners -
PDB Resolution 2.89
Date 2025-08-27
D.O.I. To be published
Net Summary
Imin 2.98
Number of Linked Nodes 267
Number of Links 286
Number of Hubs 38
Number of Links mediated by Hubs 143
Number of Communities 5
Number of Nodes involved in Communities 44
Number of Links involved in Communities 60
Path Summary
Number Of Nodes in MetaPath 86
Number Of Links MetaPath 85
Number of Shortest Paths 39775
Length Of Smallest Path 3
Average Path Length 15.368
Length of Longest Path 35
Minimum Path Strength 1.43
Average Path Strength 6.06212
Maximum Path Strength 17.445
Minimum Path Correlation 0.7
Average Path Correlation 0.928227
Maximum Path Correlation 0.99
Minimum % Of Corr. Nodes 3.44828
Average % Of Corr. Nodes 50.3736
Maximum % Of Corr. Nodes 100
Minimum Path Hubs % 0
Average Path Hubs % 38.0541
Maximum Path Hubs % 100
AnnotationTypeLinks
Gene OntologyMolecular Function
Gene OntologyBiological Process• positive regulation of cytosolic calcium ion concentration   • biological regulation   • regulation of biological quality   • cell chemotaxis   • cellular response to stimulus   • chemotaxis   • response to stimulus   • response to external stimulus   • cellular response to chemical stimulus   • taxis   • response to chemical   • cell migration   • cellular process   • cell motility   • locomotion   • regulation of biological process   • regulation of cellular process   • signaling   • intracellular signal transduction   • cell communication   • calcium-mediated signaling   • intracellular signaling cassette   • signal transduction   • immune response   • immune system process   • cellular anatomical structure   • membrane   • host cell plasma membrane   • host cellular component   • host cell part   • host cell membrane   • other organism part
Gene OntologyCellular Component
SCOP2Domain Identifier
SCOP2Family Identifier
Membrane Protein Annotations-• Orientations of Proteins in Membranes database (OPM)   • Protein Data Bank of Transmembrane Proteins (PDBTM)   • MemProtMD


Details about the values in these tables can be found in the corresponding documentation page .
PDBsumOpen PDBsum Page
ChainR
ProteinReceptor
UniProtQ98146
Sequence
>8W1A_Chain_R
TTVVPYTWN VGILSLIFL INVLGNGLV TYIFCKHRS RAGAIDILL 
LGICLNSLC LSISLLAEV LMFLFPNII STGLCRLEI FFYYLYVYL 
DIFSVVCVS LVRYLLVAY STRSWPKKQ SLGWVLTSA ALIALVLSG 
DACRHRSRV VDPVSKQAM CYENAGNMT ADWRLHVRT VSVTAGFLL 
PLALLILFY ALTWCVVRR TKLQARRKV RGVIVAVVL FFVFCFPYH 
VLNLLDTLL RRRWIRDSC YTRGLINVG LAVTSLLQA LYSAVVPLI 
YSCLGSLFR QRMYGLFQS


Click on each residue to open a popup with some information about it.

ConSurf Conservation Grade (See documentation): 

 n/a   1    2    3    4    5    6    7    8    9  




This receptor, from the same or other species and bound to the same or other ligands, is also present in the following networks:
Show PDB Class SubFamily Type SubType Species Orthosteric Ligand Other Ligand(s) Protein Partners Resolution Date DOI
8W1AAOtherUclassifiedORF74Human gammaherpesvirus 8---2.892025-08-27To be published




You can download a compressed (zip) file with structure(s), 3D outputs (as PyMol and VMD scripts) and numerical data files (as csv and plain text files).

Download 8W1A.zip



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