Color ConSurf Grade
      No Conservation data available
      1
      2
      3
      4
      5
      6
      7
      8
      9

Index: hub id, click on each number to highlight the corresponding hub in the 3D visualization.

Hub: the hub being considered.

Avg Int. Strength: the average interaction strength of all the links of the corresponding hub.

Num Of Links: the number of links of the corresponding hub.

Community: the id of the community the link belong to, otherwise 0.

ConSurf: this column reports the ConSurf conservation grades of each hub.

Index Hub Avg Int. Strength Num Of Links Community ConSurf
1L:L:?1 inf1910
2R:R:P9 3.76405
3R:R:D10 inf417
4R:R:Y30 5.8625408
5R:R:F61 5.278507
6R:R:T68 6.5225408
7R:R:D69 8.5125409
8R:R:L76 2.5525408
9R:R:Y82 9.0075425
10R:R:H83 5.5175425
11R:R:H87 8.21424
12R:R:W89 11.8325429
13R:R:F91 8.858527
14R:R:F103 5.782506
15R:R:Y104 inf515
16R:R:L112 4.805406
17R:R:M114 6.286539
18R:R:F122 6.482568
19R:R:Y127 5.006566
20R:R:S131 3.81406
21R:R:L163 4.2775404
22R:R:Y165 inf511
23R:R:L201 4.3075405
24R:R:F202 12.705448
25R:R:F206 5.305647
26R:R:Y213 5.528509
27R:R:L220 2.58407
28R:R:R232 4.75407
29R:R:F246 9.0275409
30R:R:N253 9.0525417
31R:R:H260 inf414
32R:R:I261 inf415
33R:R:Y272 inf414
34R:R:Y275 inf515
35R:R:N285 9.49439
36R:R:D289 8.4425439
37R:R:Y294 8.774557
38R:R:R298 7.165495
39R:R:F300 6.7025458
   

Color ConSurf Grade
      No Conservation data available
      1
      2
      3
      4
      5
      6
      7
      8
      9

Index: link id, click on each number to highlight the corresponding link in the 3D visualization.

Node1 Node2: the two nodes of the corresponding link.

Recurrence: the relative Recurrence in the pool of shortest paths.

Int. Strength: the interaction strength between the two nodes.

Hub1?, Hub2?: "Yes" if the corresponding node has more than 3 links, otherwise "No".

Community: the id of the community the link belong to, otherwise 0.

ConSurf1, ConSurf2: these columns report the ConSurf conservation grades of the two nodes involved in a link.

Index Node1 Node2 Recurrence Int. Strength Hub1? Hub2? Community ConSurf1 ConSurf2
1L:L:?1 R:R:Y272 56.811infYesYes104
2R:R:M16 R:R:Y272 49.73575.99NoYes064
3R:R:L17 R:R:M16 48.82454.24NoNo066
4R:R:H87 R:R:L17 46.653514.14YesNo046
5R:R:H87 R:R:Y82 31.31057.62YesYes245
6R:R:W89 R:R:Y82 31.55795.79YesYes295
7R:R:F91 R:R:W89 23.897618.04YesYes279
8R:R:F91 R:R:Y81 11.59737.22YesNo274
9R:R:N85 R:R:Y81 10.23064.65NoNo044
10R:R:K276 R:R:Y272 10.073113.14NoYes044
11R:R:H83 R:R:H87 13.0994.78YesYes254
12R:R:H83 R:R:L26 10.277.71YesNo056
13L:L:?1 R:R:Y104 76.8785infYesYes105
14R:R:F103 R:R:Y104 90.461210.32YesYes065
15R:R:F103 R:R:L76 10.64682.44YesYes068
16R:R:F103 R:R:M107 90.56246.22YesNo068
17R:R:L72 R:R:M107 96.42297.07NoNo078
18R:R:L72 R:R:N286 96.43989.61NoNo079
19R:R:D69 R:R:N286 10013.46YesNo099
20R:R:D69 R:R:N41 33.8925.39YesNo099
21R:R:N41 R:R:P290 31.41734.89NoNo099
22R:R:F295 R:R:P290 30.16317.22NoNo069
23R:R:F295 R:R:F300 27.62095.36NoYes068
24R:R:D289 R:R:D69 90.12379.31YesYes099
25R:R:D289 R:R:M114 81.96855.54YesYes399
26R:R:M114 R:R:Y293 57.05857.18YesNo099
27R:R:V242 R:R:Y293 56.09678.83NoNo089
28R:R:V242 R:R:Y213 52.86288.83NoYes089
29R:R:R121 R:R:Y213 20.28126.17NoYes099
30R:R:I117 R:R:R121 19.03826.26NoNo099
31R:R:F61 R:R:I117 17.67725.02YesNo079
32R:R:E120 R:R:F61 11.95164.66NoYes087
33R:R:D69 R:R:S110 11.97415.89YesNo099
34R:R:S110 R:R:T68 10.57374.8NoYes098
35R:R:F176 R:R:T100 13.61643.89NoNo045
36R:R:F246 R:R:M114 32.27227.46YesYes099
37R:R:F246 R:R:T209 20.680516.86YesNo098
38R:R:T115 R:R:T209 16.51296.28NoNo088
39R:R:P205 R:R:T115 13.61086.99NoNo098
40R:R:S118 R:R:T209 10.01699.59NoNo098
41R:R:A239 R:R:Y213 44.27452.67NoYes079
42R:R:A239 R:R:I217 43.12153.25NoNo075
43R:R:I217 R:R:L221 40.7482.85NoNo054
44R:R:L221 R:R:V236 39.53325.96NoNo045
45R:R:L220 R:R:V236 38.29022.98YesNo075
46R:R:L220 R:R:V125 25.7482.98YesNo078
47R:R:T216 R:R:V125 24.56134.76NoNo088
48R:R:F122 R:R:T216 23.21152.59YesNo088
49R:R:F122 R:R:Y127 16.14179.28YesYes686
50R:R:S131 R:R:Y127 11.96292.54YesYes066
51L:L:?1 R:R:Y165 15.4893infYesYes101
52L:L:?1 R:R:W190 10.1912infYesNo003
53R:R:F206 R:R:F246 23.42526.43YesYes079
54R:R:L220 R:R:R232 11.64231.21YesYes077
55L:L:?1 R:R:L265 11.6029infYesNo001
56R:R:F266 R:R:L265 10.19129.74NoNo021
Download PSN data

2D representation of the global metapath, ligand(s) interactions and
histograms of path distribution according to several parameters
(click on the image to enlarge it 🔍):

A 2D representation of the global communication in the network.

ConSurf Conservation Grade (See documentation): 

 n/a   1    2    3    4    5    6    7    8    9  

Number of shortest communication paths as a function of the average residue correlation.

Number of shortest communication paths as a function of the average interaction strength of their links.

Number of shortest communication paths as a function of the % of hub nodes in each path.

Number of shortest communication paths as a function of the number of nodes in each path.

Number of shortest communication paths as a function of the % of correlated nodes in each path.


2D representation of the interactions of this orthosteric/allosteric ligand.


Links and nodes colored according to ConSurf Conservation Grade (See documentation): 

 n/a   1    2    3    4    5    6    7    8    9  

Node1 Node2 LinkStrength Comm IsNode1Hub? IsNode2Hub? Node1Cons Node2Cons Node1Shell Node2Shell
L:L:?1 R:R:D10 inf 1 Yes Yes 0 7 0 1
L:L:?1 R:R:T13 inf 1 Yes No 0 7 0 1
L:L:?1 R:R:Y104 inf 1 Yes Yes 0 5 0 1
L:L:?1 R:R:Y108 inf 1 Yes No 0 7 0 1
L:L:?1 R:R:Y165 inf 1 Yes Yes 0 1 0 1
L:L:?1 R:R:F176 inf 1 Yes No 0 4 0 1
L:L:?1 R:R:V178 inf 1 Yes No 0 3 0 1
L:L:?1 R:R:L179 inf 1 Yes No 0 4 0 1
L:L:?1 R:R:W181 inf 1 Yes No 0 2 0 1
L:L:?1 R:R:W190 inf 1 Yes No 0 3 0 1
L:L:?1 R:R:L194 inf 1 Yes No 0 5 0 1
L:L:?1 R:R:I197 inf 1 Yes No 0 5 0 1
L:L:?1 R:R:L257 inf 1 Yes No 0 6 0 1
L:L:?1 R:R:H260 inf 1 Yes Yes 0 4 0 1
L:L:?1 R:R:I261 inf 1 Yes Yes 0 5 0 1
L:L:?1 R:R:R264 inf 1 Yes No 0 3 0 1
L:L:?1 R:R:L265 inf 1 Yes No 0 1 0 1
L:L:?1 R:R:Y272 inf 1 Yes Yes 0 4 0 1
L:L:?1 R:R:Y275 inf 1 Yes Yes 0 5 0 1
R:R:D10 R:R:T13 8.67 1 Yes No 7 7 1 1
R:R:D10 R:R:R264 10.72 1 Yes No 7 3 1 1
R:R:M16 R:R:Y272 5.99 0 No Yes 6 4 2 1
R:R:F103 R:R:Y104 10.32 0 Yes Yes 6 5 2 1
R:R:F103 R:R:L279 7.31 0 Yes No 6 5 2 2
R:R:Y104 R:R:Y108 6.95 1 Yes No 5 7 1 1
R:R:F176 R:R:Y104 6.19 1 No Yes 4 5 1 1
R:R:Y104 R:R:Y275 4.96 1 Yes Yes 5 5 1 1
R:R:L201 R:R:Y108 7.03 0 Yes No 5 7 2 1
R:R:V178 R:R:Y165 7.57 1 No Yes 3 1 1 1
R:R:K180 R:R:Y165 4.78 0 No Yes 3 1 2 1
R:R:L184 R:R:W190 12.53 0 No No 1 3 2 1
R:R:F193 R:R:I197 11.3 0 No No 6 5 2 1
R:R:I261 R:R:L194 7.14 1 Yes No 5 5 1 1
R:R:F195 R:R:I261 5.02 0 No Yes 5 5 2 1
R:R:I197 R:R:L201 4.28 0 No Yes 5 5 1 2
R:R:N253 R:R:Y275 11.63 1 Yes Yes 7 5 2 1
R:R:L279 R:R:N253 6.87 1 No Yes 5 7 2 2
R:R:I261 R:R:L257 7.14 1 Yes No 5 6 1 1
R:R:L257 R:R:Y275 9.38 1 No Yes 6 5 1 1
R:R:H260 R:R:R264 4.51 1 Yes No 4 3 1 1
R:R:H260 R:R:S270 6.97 1 Yes No 4 4 1 2
R:R:H260 R:R:Y272 10.89 1 Yes Yes 4 4 1 1
R:R:F266 R:R:L265 9.74 0 No No 2 1 2 1
R:R:K276 R:R:Y272 13.14 0 No Yes 4 4 2 1
R:R:L279 R:R:Y275 7.03 1 No Yes 5 5 2 1
R:R:P9 R:R:Y165 4.17 0 Yes Yes 5 1 2 1
R:R:P166 R:R:Y165 4.17 0 No Yes 3 1 2 1
R:R:F176 R:R:T100 3.89 1 No No 4 5 1 2
R:R:V187 R:R:W181 2.45 0 No No 3 2 2 1
R:R:A12 R:R:D10 1.54 0 No Yes 4 7 2 1

Location and physicochemical properties of the interaction partners of this ligand

Interactions of this ligand

Similarities between the interactions of this ligand and those of other networks

PDB Summary
PDB 9ECJ_nogp
Class
SubFamily
Type
SubType
Species
Ligand
Other Ligand(s)
Protein Partners
PDB Resolution
Date
D.O.I.
Net Summary
Imin 4.23
Number of Linked Nodes 279
Number of Links 306
Number of Hubs 39
Number of Links mediated by Hubs 155
Number of Communities 9
Number of Nodes involved in Communities 50
Number of Links involved in Communities 66
Path Summary
Number Of Nodes in MetaPath 57
Number Of Links MetaPath 56
Number of Shortest Paths 35756
Length Of Smallest Path 3
Average Path Length 14.2765
Length of Longest Path 37
Minimum Path Strength 1.33
Average Path Strength inf
Maximum Path Strength inf
Minimum Path Correlation 0.7
Average Path Correlation 0.925084
Maximum Path Correlation 0.99
Minimum % Of Corr. Nodes 3.84615
Average % Of Corr. Nodes 51.5548
Maximum % Of Corr. Nodes 100
Minimum Path Hubs % 0
Average Path Hubs % 42.2549
Maximum Path Hubs % 100
AnnotationTypeLinks
Gene OntologyMolecular Function• protein binding   • binding   • enzyme binding   • GTPase binding   • protein-containing complex binding   • pyrophosphatase activity   • GTPase activity   • ribonucleoside triphosphate phosphatase activity   • hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides   • hydrolase activity   • hydrolase activity, acting on acid anhydrides   • catalytic activity   • signaling receptor complex adaptor activity   • protein-macromolecule adaptor activity   • molecular adaptor activity   • signaling adaptor activity   • multicellular organismal process   • system process   • sensory perception of chemical stimulus   • sensory perception   • nervous system process   • sensory perception of taste   • developmental process   • sensory organ development   • eye development   • animal organ development   • retina development in camera-type eye   • visual system development   • multicellular organism development   • camera-type eye development
Gene OntologyBiological Process• multicellular organismal process   • system process   • sensory perception of chemical stimulus   • sensory perception   • nervous system process   • sensory perception of taste   • developmental process   • sensory organ development   • eye development   • animal organ development   • retina development in camera-type eye   • visual system development   • multicellular organism development   • camera-type eye development   • anatomical structure development   • sensory system development   • system development   • cell population proliferation   • cellular process   • cellular response to stimulus   • regulation of biological process   • regulation of cellular process   • response to stimulus   • signaling   • biological regulation   • signal transduction   • cell communication   • response to ketone   • response to prostaglandin   • response to lipid   • response to endogenous stimulus   • response to alcohol   • cellular response to prostaglandin stimulus   • response to oxygen-containing compound   • cellular response to oxygen-containing compound   • cellular response to endogenous stimulus   • cellular response to prostaglandin E stimulus   • cellular response to chemical stimulus   • cellular response to alcohol   • response to hormone   • response to chemical   • cellular response to lipid   • response to prostaglandin E   • cellular response to ketone   • cellular response to hormone stimulus   • small GTPase-mediated signal transduction   • Ras protein signal transduction   • intracellular signal transduction   • intracellular signaling cassette   • phospholipase C-activating G protein-coupled receptor signaling pathway   • G protein-coupled receptor signaling pathway   • cellular response to nitrogen compound   • response to dopamine   • cellular response to dopamine   • response to monoamine   • response to catecholamine   • adenylate cyclase-activating dopamine receptor signaling pathway   • cellular response to catecholamine stimulus   • G protein-coupled dopamine receptor signaling pathway   • response to nitrogen compound   • adenylate cyclase-activating G protein-coupled receptor signaling pathway   • cellular response to monoamine stimulus   • adenylate cyclase-modulating G protein-coupled receptor signaling pathway   • synaptic signaling   • cellular response to acetylcholine   • cell-cell signaling   • acetylcholine receptor signaling pathway   • postsynaptic signal transduction   • G protein-coupled acetylcholine receptor signaling pathway   • response to acetylcholine   • cellular anatomical structure   • membrane   • protein-containing complex   • extrinsic component of plasma membrane   • catalytic complex   • plasma membrane protein complex   • cytoplasmic side of membrane   • plasma membrane   • membrane protein complex   • heterotrimeric G-protein complex   • side of membrane   • cell periphery   • cytoplasmic side of plasma membrane   • GTPase complex
Gene OntologyCellular Component• cellular anatomical structure   • membrane   • protein-containing complex   • extrinsic component of plasma membrane   • catalytic complex   • plasma membrane protein complex   • cytoplasmic side of membrane   • plasma membrane   • membrane protein complex   • heterotrimeric G-protein complex   • side of membrane   • cell periphery   • cytoplasmic side of plasma membrane   • GTPase complex   • extrinsic component of membrane   • extrinsic component of cytoplasmic side of plasma membrane   • extracellular exosome   • membrane-bounded organelle   • extracellular vesicle   • extracellular organelle   • extracellular region   • organelle   • extracellular space   • vesicle   • extracellular membrane-bounded organelle   • non-motile cilium   • 9+0 non-motile cilium   • cilium   • neuron projection   • photoreceptor disc membrane   • photoreceptor outer segment   • plasma membrane bounded cell projection   • cell projection   • photoreceptor cell cilium   • organelle membrane   • intracellular anatomical structure   • cytoplasm   • cytosol   • vacuolar membrane   • lytic vacuole   • vacuole   • intracellular membrane-bounded organelle   • intracellular organelle   • lytic vacuole membrane   • bounding membrane of organelle   • lysosomal membrane   • lysosome   • synapse   • cell junction   • binding   • guanyl nucleotide binding   • GTP binding   • nucleotide binding   • guanyl ribonucleotide binding   • purine ribonucleotide binding   • purine ribonucleoside triphosphate binding   • nucleoside phosphate binding   • ion binding   • purine nucleotide binding   • anion binding   • heterocyclic compound binding   • carbohydrate derivative binding   • ribonucleotide binding   • small molecule binding   • protein binding   • signaling receptor binding   • G protein-coupled receptor binding   • D5 dopamine receptor binding   • dopamine receptor binding   • GTPase regulator activity   • enzyme regulator activity   • guanyl-nucleotide exchange factor activity   • nucleoside-triphosphatase regulator activity   • molecular function regulator activity   • protein-containing complex binding   • G-protein beta/gamma-subunit complex binding   • pyrophosphatase activity   • GTPase activity   • G protein activity   • ribonucleoside triphosphate phosphatase activity   • hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides   • hydrolase activity   • hydrolase activity, acting on acid anhydrides   • catalytic activity   • cation binding   • metal ion binding   • multicellular organismal process   • system process   • circulatory system process   • regulation of blood pressure   • biological regulation   • regulation of biological quality   • blood circulation   • developmental process   • cellular developmental process   • cell differentiation   • cellular process   • cellular response to stimulus   • regulation of biological process   • regulation of cellular process   • response to stimulus   • signaling   • cell communication   • adenylate cyclase-modulating G protein-coupled receptor signaling pathway   • G protein-coupled receptor signaling pathway   • signal transduction   • regulation of cell motility   • regulation of fibroblast migration   • fibroblast migration   • regulation of locomotion   • ameboidal-type cell migration   • regulation of cell migration   • cell migration   • cell motility   • locomotion   • multicellular organism development   • embryo development ending in birth or egg hatching   • chordate embryonic development   • anatomical structure development   • embryo development   • in utero embryonic development   • adenylate cyclase-activating G protein-coupled receptor signaling pathway   • regulation of developmental process   • regulation of cell shape   • cell morphogenesis   • regulation of cell morphogenesis   • anatomical structure morphogenesis   • regulation of anatomical structure morphogenesis   • regulation of body fluid levels   • wound healing   • cell activation   • hemostasis   • blood coagulation   • response to stress   • coagulation   • response to wounding   • platelet activation   • branching morphogenesis of an epithelial tube   • angiogenesis   • tube morphogenesis   • epithelial tube morphogenesis   • blood vessel development   • system development   • epithelium development   • blood vessel morphogenesis   • tube development   • morphogenesis of an epithelium   • tissue development   • vasculature development   • circulatory system development   • branching involved in blood vessel morphogenesis   • tissue morphogenesis   • morphogenesis of a branching structure   • anatomical structure formation involved in morphogenesis   • morphogenesis of a branching epithelium   • regulation of cellular component organization   • cellular component organization   • cellular component biogenesis   • cellular component assembly   • regulation of postsynapse assembly   • cell junction assembly   • regulation of synapse structure or activity   • synapse organization   • cellular component organization or biogenesis   • regulation of synapse assembly   • postsynapse organization   • postsynapse assembly   • regulation of postsynapse organization   • nervous system development   • regulation of cellular component biogenesis   • regulation of cell junction assembly   • regulation of synapse organization   • cell junction organization   • synapse assembly   • Rho-activating G protein-coupled receptor signaling pathway   • regulation of signaling   • small GTPase-mediated signal transduction   • regulation of small GTPase mediated signal transduction   • regulation of signal transduction   • intracellular signal transduction   • regulation of intracellular signal transduction   • regulation of response to stimulus   • intracellular signaling cassette   • regulation of cell communication   • Rho protein signal transduction   • anchoring junction   • focal adhesion   • cell-substrate junction   • pigment granule   • intracellular vesicle   • melanosome   • cytoplasmic vesicle   • brush border membrane   • cluster of actin-based cell projections   • brush border   • apical part of cell   • plasma membrane region   • apical plasma membrane   • cell projection membrane   • postsynapse   • nucleus   • molecular transducer activity   • G protein-coupled receptor activity   • transmembrane signaling receptor activity   • signaling receptor activity   • G protein-coupled purinergic nucleotide receptor activity   • purinergic nucleotide receptor activity   • nucleotide receptor activity
SCOP2Domain Identifier
SCOP2Family Identifier
Membrane Protein Annotations-• Orientations of Proteins in Membranes database (OPM)   • Protein Data Bank of Transmembrane Proteins (PDBTM)   • MemProtMD


Details about the values in these tables can be found in the corresponding documentation page .
Code_L_
PDB ResiduesL:L:?1
Environment DetailsOpen EMBL-EBI Page
Code_L_
Name
Synonyms
Identifier
Formula
Molecular Weight
SMILES
PubChem
Formal Charge
Total Atoms
Total Chiral Atoms
Total Bonds
Total Aromatic Bonds

PDBsumOpen PDBsum Page
ChainR
ProteinReceptor
UniProtQ86VZ1
Sequence
>9ECJ_nogp_Chain_R
GPDNATLQM LRNPAIAVA LPVVYSLVA AVSIPGNLF SLWVLCRRM 
GPRSPSVIF MINLSVTDL MLASVLPFQ IYYHCNRHH WVFGVLLCN 
VVTVAFYAN MYSSILTMT CISVERFLG VLYPLSSKR WRRRRYAVA 
ACAGTWLLL LTALSPLAR TDLTYPVHA LGIITCFDV LKWTMLPSV 
AMWAVFLFT IFILLFLIP FVITVACYT ATILKLLRT EEAHGREQR 
RRAVGLAAV VLLAFVTCF APNNFVLLA HIVSRLFYG KSYYHVYKL 
TLCLSCLNN CLDPFVYYF ASREFQLRL


Click on each residue to open a popup with some information about it.

ConSurf Conservation Grade (See documentation): 

 n/a   1    2    3    4    5    6    7    8    9  




This receptor, from the same or other species and bound to the same or other ligands, is also present in the following networks:
Show PDB Class SubFamily Type SubType Species Orthosteric Ligand Other Ligand(s) Protein Partners Resolution Date DOI
9ECJANucleotideP2YP2Y8Homo sapiensS-geranylgeranyl-L-glutathione-G13/β1/γ22.92025-11-05To be published
9ECJ (No Gprot) ANucleotideP2YP2Y8Homo sapiensS-geranylgeranyl-L-glutathione-2.92025-11-05To be published




You can download a compressed (zip) file with structure(s), 3D outputs (as PyMol and VMD scripts) and numerical data files (as csv and plain text files).

Download 9ECJ_nogp.zip



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