Color ConSurf Grade
      No Conservation data available
      1
      2
      3
      4
      5
      6
      7
      8
      9

Index: hub id, click on each number to highlight the corresponding hub in the 3D visualization.

Hub: the hub being considered.

Avg Int. Strength: the average interaction strength of all the links of the corresponding hub.

Num Of Links: the number of links of the corresponding hub.

Community: the id of the community the link belong to, otherwise 0.

ConSurf: this column reports the ConSurf conservation grades of each hub.

Index Hub Avg Int. Strength Num Of Links Community ConSurf
1L:L:?1 9.5141010
2R:R:F31 5.7725407
3R:R:Y35 10.655419
4R:R:T38 7.3425417
5R:R:I46 2.2125407
6R:R:V48 3.0725405
7R:R:Y60 6.79629
8R:R:F62 5.23833607
9R:R:Y73 8.07714714
10R:R:M81 4.8175406
11R:R:L85 8.915405
12R:R:F102 7.0475435
13R:R:F104 10.695613
14R:R:F106 12.0783603
15R:R:V108 4.77414
16R:R:E111 7.71418
17R:R:L114 9.165406
18R:R:Y123 5.89833647
19R:R:T160 4.83435
20R:R:H244 15.66409
21R:R:T258 7.485415
22R:R:Y259 5.38417
23R:R:R261 9.5025405
24R:R:Y278 10.114517
25R:R:T282 6.4475418
26R:R:P283 7.604519
27R:R:Y290 6.965409
28R:R:T291 7.875408
29R:R:D296 4.0925426
   

Color ConSurf Grade
      No Conservation data available
      1
      2
      3
      4
      5
      6
      7
      8
      9

Index: link id, click on each number to highlight the corresponding link in the 3D visualization.

Node1 Node2: the two nodes of the corresponding link.

Recurrence: the relative Recurrence in the pool of shortest paths.

Int. Strength: the interaction strength between the two nodes.

Hub1?, Hub2?: "Yes" if the corresponding node has more than 3 links, otherwise "No".

Community: the id of the community the link belong to, otherwise 0.

ConSurf1, ConSurf2: these columns report the ConSurf conservation grades of the two nodes involved in a link.

Index Node1 Node2 Recurrence Int. Strength Hub1? Hub2? Community ConSurf1 ConSurf2
1L:L:?1 R:R:F17 22.41743.53YesNo005
2R:R:F17 R:R:K89 18.333219.85NoNo052
3L:L:?1 R:R:H84 12.98986.21YesNo107
4L:L:?1 R:R:Q80 40.294912.85YesNo006
5R:R:M81 R:R:Q80 22.35115.44YesNo066
6R:R:F31 R:R:M81 52.59716.22YesYes076
7R:R:F31 R:R:L27 21.613810.96YesNo075
8R:R:L20 R:R:L27 11.00999.69NoNo025
9R:R:F31 R:R:F32 27.97612.14YesNo076
10R:R:F28 R:R:F32 17.49652.14NoNo076
11L:L:?1 R:R:F104 47.982828.22YesYes103
12R:R:F104 R:R:Y73 56.366510.32YesYes134
13R:R:Y35 R:R:Y73 14.31534.96YesYes194
14L:L:?1 R:R:V108 46.74014.32YesYes104
15R:R:V108 R:R:Y73 48.82785.05YesYes144
16R:R:P283 R:R:Y73 1006.95YesYes194
17R:R:M81 R:R:V78 54.52746.09YesNo065
18R:R:D70 R:R:P283 72.79438.05NoYes099
19R:R:D70 R:R:N42 54.353413.46NoNo099
20R:R:I71 R:R:N42 50.45984.25NoNo069
21R:R:I46 R:R:I71 49.04322.94YesNo076
22R:R:I46 R:R:V47 57.47661.54YesNo073
23R:R:I304 R:R:V47 41.23931.54NoNo043
24R:R:I304 R:R:V48 34.68644.61NoYes045
25R:R:D52 R:R:V48 28.79634.38NoYes065
26R:R:D52 R:R:L55 27.59518.14NoNo069
27R:R:L55 R:R:Y60 25.45778.21NoYes099
28R:R:I297 R:R:Y60 30.66857.25NoYes289
29R:R:I297 R:R:T291 27.03176.08NoYes088
30R:R:I45 R:R:T291 13.586312.16NoYes078
31R:R:D70 R:R:E111 51.59473.9NoYes098
32R:R:E111 R:R:L66 88.8417.95YesNo089
33R:R:L114 R:R:L66 81.269211.07YesNo069
34R:R:F62 R:R:L114 70.5994.87YesYes076
35R:R:D121 R:R:F62 60.30983.58NoYes097
36R:R:D121 R:R:M136 57.82454.16NoNo098
37R:R:M136 R:R:P58 48.79468.39NoNo089
38R:R:P58 R:R:T57 45.87863.5NoNo097
39R:R:T57 R:R:Y60 43.58387.49NoYes079
40R:R:P283 R:R:T282 80.6235.25YesYes198
41R:R:E111 R:R:T282 49.38.47YesYes188
42L:L:?1 R:R:Y278 37.387111.32YesYes107
43R:R:Y251 R:R:Y278 45.174425.81NoYes057
44R:R:V281 R:R:Y251 46.93077.57NoNo055
45R:R:T282 R:R:V281 34.86874.76YesNo085
46R:R:C141 R:R:F62 10.07374.19NoYes077
47R:R:N286 R:R:T282 55.74527.31NoYes198
48R:R:L115 R:R:N286 61.8599.61NoNo089
49R:R:L115 R:R:Y290 68.6778.21NoYes089
50R:R:M118 R:R:Y290 15.65745.99NoYes099
51R:R:F107 R:R:Y73 50.318910.32NoYes044
52R:R:F106 R:R:F107 48.446717.15YesNo034
53R:R:F106 R:R:S110 12.36853.96YesNo035
54R:R:I69 R:R:S110 10.62884.64NoNo055
55R:R:F106 R:R:W149 12.36856.01YesNo035
56R:R:I69 R:R:W149 10.62885.87NoNo055
57L:L:?1 R:R:L101 29.533610.69YesNo005
58R:R:L101 R:R:Q100 25.60683.99NoNo059
59R:R:I91 R:R:K89 13.61944.36NoNo042
60R:R:F106 R:R:S156 30.26263.96YesNo035
61R:R:F102 R:R:S156 27.74423.96YesNo055
62R:R:F102 R:R:H159 12.583911.31YesNo054
63R:R:F106 R:R:G152 25.74776.02YesNo037
64R:R:G151 R:R:G152 23.63522.11NoNo047
65R:R:G151 R:R:L113 19.59241.71NoNo043
66R:R:L113 R:R:P210 17.67051.64NoNo037
67R:R:L285 R:R:V281 20.23035.96NoNo075
68R:R:I247 R:R:L285 19.08715.71NoNo087
69R:R:I247 R:R:I289 16.4035.89NoNo589
70R:R:I289 R:R:Y290 17.72846.04NoYes099
71R:R:H244 R:R:Y290 89.16417.62YesYes099
72R:R:H244 R:R:Y218 59.589140.29YesNo099
73R:R:P210 R:R:T209 14.52245.25NoNo071
74R:R:C213 R:R:T209 13.24661.69NoNo041
75R:R:C213 R:R:Y120 12.27742.69NoNo046
76R:R:Y120 R:R:Y123 10.12349.93NoYes467
77R:R:C241 R:R:Y218 54.91676.72NoNo099
78R:R:C241 R:R:I221 22.44221.64NoNo099
79R:R:I221 R:R:Y123 17.92737.25NoYes097
80R:R:H244 R:R:L245 27.28036.43YesNo097
81R:R:I215 R:R:L245 24.314511.42NoNo037
82R:R:F211 R:R:I215 21.33217.54NoNo043
83R:R:F211 R:R:I249 15.31778.79NoNo045
84R:R:C241 R:R:I222 36.51733.27NoNo096
85R:R:Y259 R:R:Y278 24.87783.97YesYes177
86R:R:T258 R:R:Y259 21.32383.75YesYes157
87R:R:F257 R:R:T258 11.05136.49NoYes045
88R:R:V43 R:R:V47 16.8421.6NoNo013
89R:R:L39 R:R:V43 14.07512.98NoNo051
90R:R:Q100 R:R:Q80 33.75038.96NoNo096
91R:R:G96 R:R:Q100 49.65621.64NoNo049
92R:R:G95 R:R:G96 29.84012.11NoNo014
93R:R:G95 R:R:I92 19.90721.76NoNo019
94R:R:I222 R:R:I225 15.40052.94NoNo068
95R:R:F238 R:R:I222 18.54863.77NoNo076
96L:L:?1 R:R:I105 22.79026.89YesNo004
97R:R:I105 R:R:N155 18.33322.83NoNo044
98R:R:I202 R:R:N155 13.61942.83NoNo044
99R:R:D296 R:R:Y60 16.73438.05YesYes269
100R:R:I69 R:R:L68 18.7061.43NoNo054
101R:R:V78 R:R:Y35 57.940516.4NoYes059
102R:R:P283 R:R:Y35 47.37812.52YesYes199
103R:R:F104 R:R:Y278 10.44654.13YesYes137
104R:R:I46 R:R:L68 17.6871.43YesNo074
105R:R:F62 R:R:M118 13.65268.71YesNo079
Download PSN data

2D representation of the global metapath, ligand(s) interactions and
histograms of path distribution according to several parameters
(click on the image to enlarge it 🔍):

A 2D representation of the global communication in the network.

ConSurf Conservation Grade (See documentation): 

 n/a   1    2    3    4    5    6    7    8    9  

Number of shortest communication paths as a function of the average residue correlation.

Number of shortest communication paths as a function of the average interaction strength of their links.

Number of shortest communication paths as a function of the % of hub nodes in each path.

Number of shortest communication paths as a function of the number of nodes in each path.

Number of shortest communication paths as a function of the % of correlated nodes in each path.


2D representation of the interactions of this orthosteric/allosteric ligand.


Links and nodes colored according to ConSurf Conservation Grade (See documentation): 

 n/a   1    2    3    4    5    6    7    8    9  

Node1 Node2 LinkStrength Comm IsNode1Hub? IsNode2Hub? Node1Cons Node2Cons Node1Shell Node2Shell
L:L:?1 R:R:F17 3.53 1 Yes No 0 5 0 1
L:L:?1 R:R:Q80 12.85 1 Yes No 0 6 0 1
L:L:?1 R:R:H84 6.21 1 Yes No 0 7 0 1
L:L:?1 R:R:L101 10.69 1 Yes No 0 5 0 1
L:L:?1 R:R:F104 28.22 1 Yes Yes 0 3 0 1
L:L:?1 R:R:I105 6.89 1 Yes No 0 4 0 1
L:L:?1 R:R:V108 4.32 1 Yes Yes 0 4 0 1
L:L:?1 R:R:R272 8.21 1 Yes No 0 6 0 1
L:L:?1 R:R:Y278 11.32 1 Yes Yes 0 7 0 1
R:R:F17 R:R:K89 19.85 0 No No 5 2 1 2
R:R:D18 R:R:H84 5.04 0 No No 7 7 2 1
R:R:N77 R:R:Y73 15.12 1 No Yes 6 4 2 2
R:R:F104 R:R:Y73 10.32 1 Yes Yes 3 4 1 2
R:R:V108 R:R:Y73 5.05 1 Yes Yes 4 4 1 2
R:R:S279 R:R:Y73 3.82 1 No Yes 6 4 2 2
R:R:F104 R:R:N77 9.67 1 Yes No 3 6 1 2
R:R:M81 R:R:Q80 5.44 0 Yes No 6 6 2 1
R:R:Q100 R:R:Q80 8.96 0 No No 9 6 2 1
R:R:H84 R:R:R272 21.44 1 No No 7 6 1 1
R:R:L101 R:R:Q100 3.99 0 No No 5 9 1 2
R:R:F104 R:R:V108 7.87 1 Yes Yes 3 4 1 1
R:R:F104 R:R:Y278 4.13 1 Yes Yes 3 7 1 1
R:R:F104 R:R:S279 3.96 1 Yes No 3 6 1 2
R:R:Y251 R:R:Y278 25.81 0 No Yes 5 7 2 1
R:R:A255 R:R:Y259 5.34 1 No Yes 4 7 2 2
R:R:A255 R:R:Y278 5.34 1 No Yes 4 7 2 1
R:R:Y259 R:R:Y278 3.97 1 Yes Yes 7 7 2 1
L:L:?1 R:R:S275 2.9 1 Yes No 0 7 0 1
R:R:I105 R:R:N155 2.83 0 No No 4 4 1 2
R:R:G109 R:R:V108 1.84 0 No Yes 3 4 2 1
R:R:L273 R:R:R272 1.21 0 No No 5 6 2 1

Location and physicochemical properties of the interaction partners of this ligand

Interactions of this ligand

Similarities between the interactions of this ligand and those of other networks

PDB Summary
PDB 9LKB_nogp
Class
SubFamily
Type
SubType
Species
Ligand
Other Ligand(s)
Protein Partners
PDB Resolution
Date
D.O.I.
Net Summary
Imin 3.53
Number of Linked Nodes 240
Number of Links 255
Number of Hubs 29
Number of Links mediated by Hubs 116
Number of Communities 5
Number of Nodes involved in Communities 31
Number of Links involved in Communities 41
Path Summary
Number Of Nodes in MetaPath 106
Number Of Links MetaPath 105
Number of Shortest Paths 42048
Length Of Smallest Path 3
Average Path Length 12.8638
Length of Longest Path 25
Minimum Path Strength 1.1
Average Path Strength 7.50535
Maximum Path Strength 26.26
Minimum Path Correlation 0.7
Average Path Correlation 0.918478
Maximum Path Correlation 0.99
Minimum % Of Corr. Nodes 5
Average % Of Corr. Nodes 43.7639
Maximum % Of Corr. Nodes 100
Minimum Path Hubs % 0
Average Path Hubs % 40.3093
Maximum Path Hubs % 100
AnnotationTypeLinks
Gene OntologyMolecular Function
Gene OntologyBiological Process• cellular response to stimulus   • regulation of biological process   • regulation of cellular process   • response to stimulus   • signaling   • biological regulation   • G protein-coupled receptor signaling pathway   • cellular process   • signal transduction   • cell communication   • multicellular organismal process   • system process   • nervous system process   • sensory perception of smell   • detection of stimulus   • sensory perception of chemical stimulus   • sensory perception   • response to chemical   • detection of chemical stimulus   • detection of chemical stimulus involved in sensory perception of smell   • detection of stimulus involved in sensory perception   • detection of chemical stimulus involved in sensory perception   • cell periphery   • cellular anatomical structure   • plasma membrane   • membrane   • protein binding   • binding   • enzyme binding   • GTPase binding   • protein-containing complex binding   • pyrophosphatase activity   • GTPase activity   • ribonucleoside triphosphate phosphatase activity   • hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides   • hydrolase activity   • hydrolase activity, acting on acid anhydrides   • catalytic activity   • signaling receptor complex adaptor activity   • protein-macromolecule adaptor activity   • molecular adaptor activity   • signaling adaptor activity   • sensory perception of taste   • developmental process   • sensory organ development   • eye development   • animal organ development   • retina development in camera-type eye   • visual system development   • multicellular organism development   • camera-type eye development   • anatomical structure development   • sensory system development   • system development   • cell population proliferation   • response to ketone   • response to prostaglandin   • response to lipid   • response to endogenous stimulus   • response to alcohol   • cellular response to prostaglandin stimulus   • response to oxygen-containing compound   • cellular response to oxygen-containing compound   • cellular response to endogenous stimulus   • cellular response to prostaglandin E stimulus   • cellular response to chemical stimulus   • cellular response to alcohol   • response to hormone   • cellular response to lipid   • response to prostaglandin E   • cellular response to ketone   • cellular response to hormone stimulus   • small GTPase-mediated signal transduction   • Ras protein signal transduction   • intracellular signal transduction   • intracellular signaling cassette   • phospholipase C-activating G protein-coupled receptor signaling pathway   • cellular response to nitrogen compound   • response to dopamine   • cellular response to dopamine   • response to monoamine   • response to catecholamine   • adenylate cyclase-activating dopamine receptor signaling pathway   • cellular response to catecholamine stimulus   • G protein-coupled dopamine receptor signaling pathway   • response to nitrogen compound   • adenylate cyclase-activating G protein-coupled receptor signaling pathway   • cellular response to monoamine stimulus   • adenylate cyclase-modulating G protein-coupled receptor signaling pathway   • synaptic signaling   • cellular response to acetylcholine   • cell-cell signaling   • acetylcholine receptor signaling pathway   • postsynaptic signal transduction   • G protein-coupled acetylcholine receptor signaling pathway   • response to acetylcholine   • protein-containing complex   • extrinsic component of plasma membrane   • catalytic complex   • plasma membrane protein complex   • cytoplasmic side of membrane   • membrane protein complex   • heterotrimeric G-protein complex   • side of membrane   • cytoplasmic side of plasma membrane   • GTPase complex   • extrinsic component of membrane   • extrinsic component of cytoplasmic side of plasma membrane   • extracellular exosome   • membrane-bounded organelle   • extracellular vesicle   • extracellular organelle   • extracellular region   • organelle   • extracellular space   • vesicle   • extracellular membrane-bounded organelle   • non-motile cilium   • 9+0 non-motile cilium   • cilium   • neuron projection   • photoreceptor disc membrane   • photoreceptor outer segment   • plasma membrane bounded cell projection   • cell projection   • photoreceptor cell cilium   • organelle membrane   • intracellular anatomical structure   • cytoplasm   • cytosol   • vacuolar membrane   • lytic vacuole   • vacuole   • intracellular membrane-bounded organelle   • intracellular organelle   • lytic vacuole membrane   • bounding membrane of organelle   • lysosomal membrane   • lysosome   • synapse   • cell junction
Gene OntologyCellular Component
SCOP2Domain Identifier
SCOP2Family Identifier
Membrane Protein Annotations-• Orientations of Proteins in Membranes database (OPM)   • Protein Data Bank of Transmembrane Proteins (PDBTM)   • MemProtMD


Details about the values in these tables can be found in the corresponding documentation page .
Code_L_
PDB ResiduesL:L:?1
Environment DetailsOpen EMBL-EBI Page
Code_L_
Name
Synonyms
Identifier
Formula
Molecular Weight
SMILES
PubChem
Formal Charge
Total Atoms
Total Chiral Atoms
Total Bonds
Total Aromatic Bonds

PDBsumOpen PDBsum Page
ChainR
ProteinReceptor
UniProtA2RT31
Sequence
>9LKB_nogp_Chain_R
FDHLNELQY LLFTIFFLT YICTLGGNV FIIVVTIAD SHLHTPMYY 
FLGNLALID ICYTTTNVP QMMVHLLSE KKIISYGGC VTQLFAFIF 
FVGSECLLL AAMAYDRYI AICKPLRYS FIMNKALCS WLAASCWTG 
GFLNSVLHT VLTFNELAL LSIGILIGW TPFLCVILS YLYIISTIL 
RIRSSEGRH KAFSTCASH LLIVILYYG SAIFTYVRP ISSYSLEKD 
RLISVLYSV VTPMLNPVI YTLRNKDIK EAVKAIG


Click on each residue to open a popup with some information about it.

ConSurf Conservation Grade (See documentation): 

 n/a   1    2    3    4    5    6    7    8    9  




This receptor, from the same or other species and bound to the same or other ligands, is also present in the following networks:
Show PDB Class SubFamily Type SubType Species Orthosteric Ligand Other Ligand(s) Protein Partners Resolution Date DOI
9LKDO2OdorantOdorant family 5OR5V1Mus musculusPL45--3.62026-01-21To be published
9LKBO2OdorantOdorant family 5OR5V1Mus musculusPL45-chim(NtGi1-Gs)/β13.72026-01-21To be published
9LKB (No Gprot) O2OdorantOdorant family 5OR5V1Mus musculusPL45-3.72026-01-21To be published




You can download a compressed (zip) file with structure(s), 3D outputs (as PyMol and VMD scripts) and numerical data files (as csv and plain text files).

Download 9LKB_nogp.zip



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