Color ConSurf Grade
      No Conservation data available
      1
      2
      3
      4
      5
      6
      7
      8
      9

Index: hub id, click on each number to highlight the corresponding hub in the 3D visualization.

Hub: the hub being considered.

Avg Int. Strength: the average interaction strength of all the links of the corresponding hub.

Num Of Links: the number of links of the corresponding hub.

Community: the id of the community the link belong to, otherwise 0.

ConSurf: this column reports the ConSurf conservation grades of each hub.

Index Hub Avg Int. Strength Num Of Links Community ConSurf
1R:R:N30 6.426509
2R:R:L32 5.4575409
3R:R:Q47 7.975429
4R:R:F50 6.058509
5R:R:D58 8.395409
6R:R:W78 6.4675469
7R:R:Y88 5.66508
8R:R:H102 5.55559
9R:R:D109 7.75429
10R:R:Y111 8.72409
11R:R:W112 8.936527
12R:R:Y120 9.53529
13R:R:R124 12.93428
14R:R:W137 7.21409
15R:R:Y172 9.1775478
16R:R:S177 4.4875418
17R:R:F181 9.95519
18R:R:Y192 6.304509
19R:R:Y196 3.914508
20R:R:F369 6.3275409
21R:R:F380 5.48833619
22R:R:W384 7.90857719
23R:R:F385 4.4175408
24R:R:F387 9.75419
25R:R:F388 8.304519
26R:R:Y391 6.97618
27R:R:F411 6.225407
28R:R:Y416 7.15333618
29R:R:N418 8.8375419
30R:R:N422 7.155409
31R:R:Y426 5.968549
32R:R:F433 8.806539
33R:R:F437 6.45439
34L:L:?1 9.4941010
   

Color ConSurf Grade
      No Conservation data available
      1
      2
      3
      4
      5
      6
      7
      8
      9

Index: link id, click on each number to highlight the corresponding link in the 3D visualization.

Node1 Node2: the two nodes of the corresponding link.

Recurrence: the relative Recurrence in the pool of shortest paths.

Int. Strength: the interaction strength between the two nodes.

Hub1?, Hub2?: "Yes" if the corresponding node has more than 3 links, otherwise "No".

Community: the id of the community the link belong to, otherwise 0.

ConSurf1, ConSurf2: these columns report the ConSurf conservation grades of the two nodes involved in a link.

Index Node1 Node2 Recurrence Int. Strength Hub1? Hub2? Community ConSurf1 ConSurf2
1R:R:I19 R:R:W413 11.90065.87NoNo079
2R:R:W413 R:R:Y416 20.94415.79NoYes098
3R:R:N30 R:R:T26 12.78262.92YesNo099
4R:R:D58 R:R:N30 82.32312.12YesYes099
5R:R:D58 R:R:N422 88.73296.73YesYes099
6R:R:N418 R:R:N422 10010.9YesYes099
7R:R:N418 R:R:W384 66.745310.17YesYes199
8L:L:?1 R:R:W384 84.33545.58YesYes109
9L:L:?1 R:R:Y416 48.11188.61YesYes108
10R:R:A55 R:R:N30 60.70814.69NoYes099
11R:R:I59 R:R:N30 10.27334.25NoYes089
12R:R:A55 R:R:V33 54.74533.39NoNo099
13R:R:T427 R:R:V33 52.65843.17NoNo099
14R:R:F437 R:R:T427 20.6467.78YesNo399
15R:R:F437 R:R:L32 15.192510.96YesYes099
16R:R:F433 R:R:T427 30.161514.27YesNo399
17R:R:D432 R:R:N430 15.26716.73NoNo099
18R:R:F433 R:R:N430 17.72678.46YesNo099
19R:R:D109 R:R:Q47 18.31063.92YesYes299
20R:R:D109 R:R:F50 28.89444.78YesYes099
21R:R:F50 R:R:I106 41.82615.02YesNo099
22R:R:I106 R:R:Y426 35.81374.84NoYes499
23R:R:L103 R:R:Y426 63.70197.03NoYes099
24R:R:L103 R:R:N422 64.95656.87NoYes099
25R:R:P46 R:R:Q47 14.34784.74NoYes089
26R:R:P126 R:R:P46 10.7957.79NoNo078
27R:R:H102 R:R:L54 47.05593.86YesNo099
28R:R:L54 R:R:N422 49.16774.12NoYes099
29R:R:H102 R:R:W137 26.93177.41YesYes099
30R:R:S69 R:R:Y88 19.37896.36NoYes088
31R:R:S69 R:R:Y416 21.40375.09NoYes088
32R:R:W78 R:R:Y88 23.75162.89YesYes098
33R:R:S98 R:R:W137 12.782614.83NoYes099
34R:R:A140 R:R:S98 10.27333.42NoNo099
35R:R:F380 R:R:W384 29.85095.01YesYes199
36R:R:H102 R:R:V136 15.26716.92YesNo099
37R:R:V101 R:R:V136 12.78266.41NoNo089
38R:R:F380 R:R:M188 54.86964.98YesNo099
39R:R:M188 R:R:S107 53.85094.6NoNo099
40R:R:S107 R:R:V191 31.78884.85NoNo099
41R:R:S107 R:R:Y192 29.105613.99NoYes099
42R:R:V191 R:R:Y111 29.75165.05NoYes099
43R:R:W112 R:R:Y111 18.75785.79YesYes079
44R:R:W112 R:R:Y120 11.26719.65YesYes279
45R:R:S115 R:R:Y111 10.211212.72NoYes099
46L:L:?1 R:R:Y391 27.92556.7YesYes108
47R:R:S176 R:R:Y391 22.77023.82NoYes098
48R:R:S176 R:R:Y172 19.590111.45NoYes098
49L:L:?1 R:R:F388 13.66465.96YesYes109
50R:R:F181 R:R:F388 19.776417.15YesYes199
51R:R:C185 R:R:F380 12.90685.59NoYes189
52R:R:F181 R:R:F385 38.44727.5YesYes098
53R:R:C185 R:R:I189 15.4413.27NoNo086
54R:R:V376 R:R:Y192 14.43485.05NoYes099
55R:R:L373 R:R:Y192 26.34783.52NoYes099
56R:R:L373 R:R:Y196 24.36023.52NoYes098
57R:R:F369 R:R:Y196 14.96895.16YesYes098
58R:R:V372 R:R:V376 12.11181.6NoNo099
59R:R:I425 R:R:Y426 12.4727.25NoYes099
60R:R:F385 R:R:P386 26.02484.33YesNo089
61R:R:F411 R:R:P386 22.857113YesNo079
62R:R:D432 R:R:Q431 10.27335.22NoNo094
63R:R:P184 R:R:V101 10.27331.77NoNo098
64R:R:D92 R:R:I65 20.149112.59NoNo099
65R:R:R110 R:R:Y192 26.63354.12NoYes099
66R:R:R110 R:R:Y426 19.01867.2NoYes499
67L:L:?1 R:R:D92 21.95039.97YesNo109
68R:R:I65 R:R:Y88 18.13668.46NoYes098
69R:R:F380 R:R:N418 33.88824.83YesYes199
70R:R:D109 R:R:Y120 10.73299.2YesYes299
71R:R:F181 R:R:F380 31.61497.5YesYes199
Download PSN data

2D representation of the global metapath, ligand(s) interactions and
histograms of path distribution according to several parameters
(click on the image to enlarge it 🔍):

A 2D representation of the global communication in the network.

ConSurf Conservation Grade (See documentation): 

 n/a   1    2    3    4    5    6    7    8    9  

Number of shortest communication paths as a function of the average residue correlation.

Number of shortest communication paths as a function of the average interaction strength of their links.

Number of shortest communication paths as a function of the % of hub nodes in each path.

Number of shortest communication paths as a function of the number of nodes in each path.

Number of shortest communication paths as a function of the % of correlated nodes in each path.


2D representation of the interactions of this orthosteric/allosteric ligand.


Links and nodes colored according to ConSurf Conservation Grade (See documentation): 

 n/a   1    2    3    4    5    6    7    8    9  

Node1 Node2 LinkStrength Comm IsNode1Hub? IsNode2Hub? Node1Cons Node2Cons Node1Shell Node2Shell
R:R:D92 R:R:I65 12.59 1 No No 9 9 1 2
R:R:I66 R:R:Y416 7.25 0 No Yes 8 8 2 1
R:R:S69 R:R:Y416 5.09 0 No Yes 8 8 2 1
R:R:D92 R:R:Y416 6.9 1 No Yes 9 8 1 1
L:L:?1 R:R:D92 9.97 1 Yes No 0 9 0 1
L:L:?1 R:R:V93 9.73 1 Yes No 0 9 0 1
R:R:C96 R:R:W384 5.22 1 No Yes 9 9 1 1
L:L:?1 R:R:C96 6.48 1 Yes No 0 9 0 1
R:R:S180 R:R:T97 7.99 0 No No 9 9 1 2
R:R:F380 R:R:I100 5.02 1 Yes No 9 9 2 2
R:R:I100 R:R:W384 12.92 1 No Yes 9 9 2 1
R:R:I173 R:R:Y391 15.71 0 No Yes 8 8 2 1
R:R:S176 R:R:Y391 3.82 0 No Yes 9 8 2 1
R:R:F388 R:R:S177 3.96 1 Yes Yes 9 8 1 2
R:R:S177 R:R:Y391 3.82 1 Yes Yes 8 8 2 1
L:L:?1 R:R:S180 6.13 1 Yes No 0 9 0 1
R:R:F181 R:R:F380 7.5 1 Yes Yes 9 9 2 2
R:R:F181 R:R:F388 17.15 1 Yes Yes 9 9 2 1
R:R:F380 R:R:W384 5.01 1 Yes Yes 9 9 2 1
R:R:F380 R:R:N418 4.83 1 Yes Yes 9 9 2 2
R:R:F388 R:R:W384 8.02 1 Yes Yes 9 9 1 1
R:R:G415 R:R:W384 8.44 0 No Yes 9 9 2 1
R:R:N418 R:R:W384 10.17 1 Yes Yes 9 9 2 1
L:L:?1 R:R:W384 5.58 1 Yes Yes 0 9 0 1
R:R:F387 R:R:F388 6.43 1 Yes Yes 9 9 1 1
R:R:F387 R:R:Y391 8.25 1 Yes Yes 9 8 1 1
R:R:F387 R:R:F408 6.43 1 Yes No 9 7 1 2
L:L:?1 R:R:F387 17.89 1 Yes Yes 0 9 0 1
L:L:?1 R:R:F388 5.96 1 Yes Yes 0 9 0 1
L:L:?1 R:R:Y391 6.7 1 Yes Yes 0 8 0 1
R:R:F412 R:R:Y416 9.28 1 No Yes 8 8 1 1
L:L:?1 R:R:F412 17.89 1 Yes No 0 8 0 1
R:R:W413 R:R:Y416 5.79 0 No Yes 9 8 2 1
L:L:?1 R:R:Y416 8.61 1 Yes Yes 0 8 0 1
R:R:L166 R:R:Y391 3.52 0 No Yes 7 8 2 1

Location and physicochemical properties of the interaction partners of this ligand

Interactions of this ligand

Similarities between the interactions of this ligand and those of other networks

PDB Summary
PDB 6K41_nogp
Class
SubFamily
Type
SubType
Species
Ligand
Other Ligand(s)
Protein Partners
PDB Resolution
Date
D.O.I.
Net Summary
Imin 3.82
Number of Linked Nodes 209
Number of Links 229
Number of Hubs 34
Number of Links mediated by Hubs 131
Number of Communities 8
Number of Nodes involved in Communities 42
Number of Links involved in Communities 57
Path Summary
Number Of Nodes in MetaPath 72
Number Of Links MetaPath 71
Number of Shortest Paths 22577
Length Of Smallest Path 3
Average Path Length 10.7303
Length of Longest Path 23
Minimum Path Strength 1.535
Average Path Strength 6.64708
Maximum Path Strength 17.89
Minimum Path Correlation 0.7
Average Path Correlation 0.899589
Maximum Path Correlation 0.99
Minimum % Of Corr. Nodes 5.55556
Average % Of Corr. Nodes 45.9895
Maximum % Of Corr. Nodes 100
Minimum Path Hubs % 0
Average Path Hubs % 51.52
Maximum Path Hubs % 100
AnnotationTypeLinks
Gene OntologyMolecular Function
Gene OntologyBiological Process
Gene OntologyCellular Component
SCOP2Domain Identifier• Transducin (heterotrimeric G protein), gamma chain   • WD40 repeat-like
SCOP2Family Identifier• Transducin (heterotrimeric G protein), gamma chain   • WD40 repeat-like
Membrane Protein Annotations-• Orientations of Proteins in Membranes database (OPM)   • Protein Data Bank of Transmembrane Proteins (PDBTM)   • MemProtMD


Details about the values in these tables can be found in the corresponding documentation page .
CodeCZX
PDB ResiduesL:L:?1
Environment DetailsOpen EMBL-EBI Page
CodeCZX
NameDexmedetomidine
Synonymsdexemedetomidine
Identifier
FormulaC13 H16 N2
Molecular Weight200.28
SMILES
PubChem5311068
Formal Charge0
Total Atoms31
Total Chiral Atoms1
Total Bonds32
Total Aromatic Bonds11

PDBsumOpen PDBsum Page
ChainR
ProteinReceptor
UniProtP18089
Sequence
>6K41_nogp_Chain_R
ATAAIAAAI TFLILFTIF GNALVILAV LTSRSLRAP QNLFLVSLA 
AADILVATL IIPFSLANE LLGYWCEVY LALDVLFCT SSIVHLCAI 
SLDRYWAVS RALEYNSKR TPRRIKCII LTVWLIAAV ISLPPLICK 
LNAWYILAS SIGSFFAPC LIMILVYLR IYLIAKRSN AQLTREKRF 
TFVLAVVIG VFVLCWFPF FFSYSLPHG LFQFFFWIG YCNSSLNPV 
IYTIFNQDF RRAFRRILC


Click on each residue to open a popup with some information about it.

ConSurf Conservation Grade (See documentation): 

 n/a   1    2    3    4    5    6    7    8    9  




This receptor, from the same or other species and bound to the same or other ligands, is also present in the following networks:
Show PDB Class SubFamily Type SubType Species Orthosteric Ligand Other Ligand(s) Protein Partners Resolution Date DOI
6K41AAmineAdrenergicα2bHomo sapiensDexmedetomidine-Go/β1/γ22.92020-04-15doi.org/10.1038/s41589-020-0492-2
6K41 (No Gprot) AAmineAdrenergicα2bHomo sapiensDexmedetomidine-2.92020-04-15doi.org/10.1038/s41589-020-0492-2
6K42AAmineAdrenergicα2bHomo sapiensDexmedetomidine-Gi1/β1/γ24.12020-04-15doi.org/10.1038/s41589-020-0492-2
6K42 (No Gprot) AAmineAdrenergicα2bHomo sapiensDexmedetomidine-4.12020-04-15doi.org/10.1038/s41589-020-0492-2




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Download 6K41_nogp.zip



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