Color ConSurf Grade
      No Conservation data available
      1
      2
      3
      4
      5
      6
      7
      8
      9

Index: hub id, click on each number to highlight the corresponding hub in the 3D visualization.

Hub: the hub being considered.

Avg Int. Strength: the average interaction strength of all the links of the corresponding hub.

Num Of Links: the number of links of the corresponding hub.

Community: the id of the community the link belong to, otherwise 0.

ConSurf: this column reports the ConSurf conservation grades of each hub.

Index Hub Avg Int. Strength Num Of Links Community ConSurf
1R:R:N30 8.15409
2R:R:F50 4.39833609
3R:R:D58 7.746529
4R:R:I65 5.485419
5R:R:W78 4.995639
6R:R:Y88 6.125408
7R:R:F95 7.0025408
8R:R:H102 7.1125469
9R:R:Y111 6.39509
10R:R:Y120 11.6975459
11R:R:R124 10.5775458
12R:R:Y172 8.614578
13R:R:F181 9.675619
14R:R:F182 5.5225418
15R:R:M188 4.4125419
16R:R:Y192 5.93419
17R:R:Y196 4.934508
18R:R:F380 5.5925419
19R:R:W384 6.31143719
20R:R:F385 3.6125408
21R:R:F387 7.805419
22R:R:F411 4.616507
23R:R:Y416 7.86833618
24R:R:Y426 5.095409
25R:R:F433 6.602549
26L:L:?1 7.650911110
   

Color ConSurf Grade
      No Conservation data available
      1
      2
      3
      4
      5
      6
      7
      8
      9

Index: link id, click on each number to highlight the corresponding link in the 3D visualization.

Node1 Node2: the two nodes of the corresponding link.

Recurrence: the relative Recurrence in the pool of shortest paths.

Int. Strength: the interaction strength between the two nodes.

Hub1?, Hub2?: "Yes" if the corresponding node has more than 3 links, otherwise "No".

Community: the id of the community the link belong to, otherwise 0.

ConSurf1, ConSurf2: these columns report the ConSurf conservation grades of the two nodes involved in a link.

Index Node1 Node2 Recurrence Int. Strength Hub1? Hub2? Community ConSurf1 ConSurf2
1R:R:W413 R:R:Y416 11.85937.72NoYes098
2L:L:?1 R:R:Y416 64.62315.74YesYes108
3L:L:?1 R:R:W384 1004.65YesYes109
4R:R:N418 R:R:W384 66.35839.04NoYes099
5R:R:N418 R:R:N422 62.451213.62NoNo099
6R:R:D58 R:R:N422 58.871510.77YesNo299
7R:R:D58 R:R:N30 54.929912.12YesYes099
8R:R:N30 R:R:T26 17.85224.39YesNo099
9R:R:A62 R:R:T26 10.61253.36NoNo099
10R:R:N30 R:R:P423 36.267511.4YesNo099
11R:R:P423 R:R:V33 32.44081.77NoNo099
12R:R:T427 R:R:V33 31.14233.17NoNo099
13R:R:F433 R:R:T427 21.89733.89YesNo099
14R:R:F380 R:R:W384 73.3517.02YesYes199
15R:R:F380 R:R:M188 80.16556.22YesYes199
16R:R:M188 R:R:S107 44.47254.6YesNo199
17R:R:S107 R:R:V191 46.32274.85NoNo099
18R:R:V191 R:R:Y111 44.39216.31NoYes099
19R:R:W112 R:R:Y111 26.80994.82NoYes079
20R:R:W112 R:R:Y120 24.546115.43NoYes079
21R:R:R124 R:R:Y120 15.846913.38YesYes589
22R:R:Q47 R:R:R124 10.606811.68NoYes098
23R:R:M188 R:R:Y192 35.07243.59YesYes199
24R:R:V376 R:R:Y192 34.35425.05NoYes099
25R:R:V376 R:R:Y426 30.03913.79NoYes099
26R:R:R110 R:R:Y426 23.43148.23NoYes099
27R:R:I106 R:R:R110 22.52935.01NoNo099
28R:R:F50 R:R:I106 21.56983.77YesNo099
29R:R:F50 R:R:I133 13.74972.51YesNo099
30R:R:H102 R:R:I133 10.73323.98YesNo699
31R:R:I65 R:R:Y416 36.46293.63YesYes198
32R:R:I65 R:R:L64 24.75872.85YesNo096
33R:R:F95 R:R:L64 17.454.87YesNo086
34R:R:I65 R:R:Y88 45.23678.46YesYes098
35R:R:S69 R:R:Y416 24.18417.63NoYes088
36R:R:S69 R:R:Y88 23.16715.09NoYes088
37R:R:F68 R:R:Y88 26.0175.16NoYes078
38R:R:F68 R:R:F80 22.33393.22NoNo078
39R:R:W78 R:R:Y88 39.94485.79YesYes098
40R:R:F80 R:R:Y79 18.639414.44NoNo085
41R:R:Y77 R:R:Y79 11.21589.93NoNo045
42R:R:C85 R:R:W78 10.81943.92NoYes399
43R:R:C164 R:R:W78 10.819413.06NoYes399
44L:L:?1 R:R:S180 19.95526.13YesNo109
45R:R:S176 R:R:S180 18.59921.63NoNo099
46R:R:S176 R:R:Y172 17.082313.99NoYes098
47R:R:F181 R:R:W384 13.85894.01YesYes199
48R:R:F181 R:R:F385 11.74446.43YesYes098
49R:R:I195 R:R:Y111 20.44362.42NoYes099
50R:R:I195 R:R:L373 19.00712.85NoNo099
51R:R:L373 R:R:Y196 17.69713.52NoYes098
52R:R:F369 R:R:Y196 11.96854.13NoYes098
53L:L:?1 R:R:F387 12.566111.93YesYes109
54R:R:D92 R:R:I65 33.31427NoYes199
55L:L:?1 R:R:D92 34.17039.97YesNo109
Download PSN data

2D representation of the global metapath, ligand(s) interactions and
histograms of path distribution according to several parameters
(click on the image to enlarge it 🔍):

A 2D representation of the global communication in the network.

ConSurf Conservation Grade (See documentation): 

 n/a   1    2    3    4    5    6    7    8    9  

Number of shortest communication paths as a function of the average residue correlation.

Number of shortest communication paths as a function of the average interaction strength of their links.

Number of shortest communication paths as a function of the % of hub nodes in each path.

Number of shortest communication paths as a function of the number of nodes in each path.

Number of shortest communication paths as a function of the % of correlated nodes in each path.


2D representation of the interactions of this orthosteric/allosteric ligand.


Links and nodes colored according to ConSurf Conservation Grade (See documentation): 

 n/a   1    2    3    4    5    6    7    8    9  

Node1 Node2 LinkStrength Comm IsNode1Hub? IsNode2Hub? Node1Cons Node2Cons Node1Shell Node2Shell
R:R:D92 R:R:I65 7 1 No Yes 9 9 1 2
R:R:I65 R:R:Y416 3.63 1 Yes Yes 9 8 2 1
R:R:S69 R:R:Y416 7.63 0 No Yes 8 8 2 1
R:R:D92 R:R:Y416 8.05 1 No Yes 9 8 1 1
L:L:?1 R:R:D92 9.97 1 Yes No 0 9 0 1
L:L:?1 R:R:V93 3.65 1 Yes No 0 9 0 1
L:L:?1 R:R:C96 9.07 1 Yes No 0 9 0 1
R:R:I143 R:R:T97 6.08 0 No No 8 9 2 1
R:R:S180 R:R:T97 7.99 1 No No 9 9 1 1
L:L:?1 R:R:T97 3.61 1 Yes No 0 9 0 1
R:R:F380 R:R:I100 3.77 1 Yes No 9 9 2 2
R:R:I100 R:R:W384 8.22 1 No Yes 9 9 2 1
R:R:I173 R:R:Y391 13.3 0 No No 8 8 2 1
R:R:S177 R:R:Y391 5.09 1 No No 8 8 2 1
L:L:?1 R:R:S180 6.13 1 Yes No 0 9 0 1
R:R:F181 R:R:F380 5.36 1 Yes Yes 9 9 2 2
R:R:F181 R:R:W384 4.01 1 Yes Yes 9 9 2 1
R:R:F181 R:R:F388 24.65 1 Yes No 9 9 2 1
R:R:F380 R:R:W384 7.02 1 Yes Yes 9 9 2 1
R:R:F388 R:R:W384 7.02 1 No Yes 9 9 1 1
R:R:G415 R:R:W384 4.22 0 No Yes 9 9 2 1
R:R:N418 R:R:W384 9.04 0 No Yes 9 9 2 1
L:L:?1 R:R:W384 4.65 1 Yes Yes 0 9 0 1
R:R:F387 R:R:F408 7.5 1 Yes No 9 7 1 2
R:R:F387 R:R:F411 3.22 1 Yes Yes 9 7 1 2
R:R:F387 R:R:F412 8.57 1 Yes No 9 8 1 1
L:L:?1 R:R:F387 11.93 1 Yes Yes 0 9 0 1
L:L:?1 R:R:F388 3.98 1 Yes No 0 9 0 1
L:L:?1 R:R:Y391 10.52 1 Yes No 0 8 0 1
R:R:F412 R:R:Y416 14.44 1 No Yes 8 8 1 1
L:L:?1 R:R:F412 14.91 1 Yes No 0 8 0 1
R:R:W413 R:R:Y416 7.72 0 No Yes 9 8 2 1
L:L:?1 R:R:Y416 5.74 1 Yes Yes 0 8 0 1
R:R:S176 R:R:S180 1.63 0 No No 9 9 2 1

Location and physicochemical properties of the interaction partners of this ligand

Interactions of this ligand

Similarities between the interactions of this ligand and those of other networks

PDB Summary
PDB 6K42_nogp
Class
SubFamily
Type
SubType
Species
Ligand
Other Ligand(s)
Protein Partners
PDB Resolution
Date
D.O.I.
Net Summary
Imin 2.85
Number of Linked Nodes 238
Number of Links 254
Number of Hubs 26
Number of Links mediated by Hubs 112
Number of Communities 7
Number of Nodes involved in Communities 39
Number of Links involved in Communities 51
Path Summary
Number Of Nodes in MetaPath 56
Number Of Links MetaPath 55
Number of Shortest Paths 35447
Length Of Smallest Path 3
Average Path Length 12.2829
Length of Longest Path 28
Minimum Path Strength 1.32
Average Path Strength 6.42632
Maximum Path Strength 17.91
Minimum Path Correlation 0.7
Average Path Correlation 0.92026
Maximum Path Correlation 0.99
Minimum % Of Corr. Nodes 4.34783
Average % Of Corr. Nodes 48.4925
Maximum % Of Corr. Nodes 100
Minimum Path Hubs % 0
Average Path Hubs % 45.9027
Maximum Path Hubs % 100
AnnotationTypeLinks
Gene OntologyMolecular Function
Gene OntologyBiological Process
Gene OntologyCellular Component
SCOP2Domain Identifier• Transducin (heterotrimeric G protein), gamma chain
SCOP2Family Identifier• Transducin (heterotrimeric G protein), gamma chain
Membrane Protein Annotations-• Orientations of Proteins in Membranes database (OPM)   • Protein Data Bank of Transmembrane Proteins (PDBTM)   • MemProtMD


Details about the values in these tables can be found in the corresponding documentation page .
CodeCZX
PDB ResiduesL:L:?1
Environment DetailsOpen EMBL-EBI Page
CodeCZX
NameDexmedetomidine
Synonymsdexemedetomidine
Identifier
FormulaC13 H16 N2
Molecular Weight200.28
SMILES
PubChem5311068
Formal Charge0
Total Atoms31
Total Chiral Atoms1
Total Bonds32
Total Aromatic Bonds11

PDBsumOpen PDBsum Page
ChainR
ProteinReceptor
UniProtP18089
Sequence
>6K42_nogp_Chain_R
ATAAIAAAI TFLILFTIF GNALVILAV LTSRSLRAP QNLFLVSLA 
AADILVATL IIPFSLANE LLGYWYFRR TWCEVYLAL DVLFCTSSI 
VHLCAISLD RYWAVSRAL EYNSKRTPR RIKCIILTV WLIAAVISL 
PPLIYKPQC KLNQEAWYI LASSIGSFF APCLIMILV YLRIYLIAK 
RSNRRRRAQ LTREKRFTF VLAVVIGVF VLCWFPFFF SYSLGAICP 
CKVPHGLFQ FFFWIGYCN SSLNPVIYT IFNQDFRRA FRRILCRPW


Click on each residue to open a popup with some information about it.

ConSurf Conservation Grade (See documentation): 

 n/a   1    2    3    4    5    6    7    8    9  




This receptor, from the same or other species and bound to the same or other ligands, is also present in the following networks:
Show PDB Class SubFamily Type SubType Species Orthosteric Ligand Other Ligand(s) Protein Partners Resolution Date DOI
6K41AAmineAdrenergicα2bHomo sapiensDexmedetomidine-Go/β1/γ22.92020-04-15doi.org/10.1038/s41589-020-0492-2
6K41 (No Gprot) AAmineAdrenergicα2bHomo sapiensDexmedetomidine-2.92020-04-15doi.org/10.1038/s41589-020-0492-2
6K42AAmineAdrenergicα2bHomo sapiensDexmedetomidine-Gi1/β1/γ24.12020-04-15doi.org/10.1038/s41589-020-0492-2
6K42 (No Gprot) AAmineAdrenergicα2bHomo sapiensDexmedetomidine-4.12020-04-15doi.org/10.1038/s41589-020-0492-2




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Download 6K42_nogp.zip



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