Color ConSurf Grade
      No Conservation data available
      1
      2
      3
      4
      5
      6
      7
      8
      9

Index: hub id, click on each number to highlight the corresponding hub in the 3D visualization.

Hub: the hub being considered.

Avg Int. Strength: the average interaction strength of all the links of the corresponding hub.

Num Of Links: the number of links of the corresponding hub.

Community: the id of the community the link belong to, otherwise 0.

ConSurf: this column reports the ConSurf conservation grades of each hub.

Index Hub Avg Int. Strength Num Of Links Community ConSurf
1R:R:H18 8.445448
2R:R:Y19 8.9825419
3R:R:I50 4.5975407
4R:R:N54 5.9425429
5R:R:L61 4.49407
6R:R:P70 5.2375465
7R:R:L78 3.97429
8R:R:Y89 8.88407
9R:R:I93 4.5825406
10R:R:W108 5.04571719
11R:R:F109 4.66415
12R:R:R111 8.1675415
13R:R:E112 7.6425415
14R:R:F116 5.545415
15R:R:L126 2.9475428
16R:R:I129 3.9875429
17R:R:T151 3.54406
18R:R:L165 1.315406
19R:R:Y189 7615
20R:R:Y193 7.11833617
21R:R:Y212 5.845409
22R:R:V219 1.515408
23R:R:F268 5.9407
24R:R:C282 4.2725434
25R:R:L285 3.8531
26R:R:Q287 5.5775454
27R:R:N298 8.932529
28R:R:N302 3.5525429
29R:R:P303 3.636529
30R:R:Y306 4.54429
31L:L:?1 7.122311300
   

Color ConSurf Grade
      No Conservation data available
      1
      2
      3
      4
      5
      6
      7
      8
      9

Index: link id, click on each number to highlight the corresponding link in the 3D visualization.

Node1 Node2: the two nodes of the corresponding link.

Recurrence: the relative Recurrence in the pool of shortest paths.

Int. Strength: the interaction strength between the two nodes.

Hub1?, Hub2?: "Yes" if the corresponding node has more than 3 links, otherwise "No".

Community: the id of the community the link belong to, otherwise 0.

ConSurf1, ConSurf2: these columns report the ConSurf conservation grades of the two nodes involved in a link.

Index Node1 Node2 Recurrence Int. Strength Hub1? Hub2? Community ConSurf1 ConSurf2
1R:R:H18 R:R:L17 13.84611.57YesNo083
2R:R:H18 R:R:P187 23.07943.05YesNo084
3R:R:P187 R:R:Y19 24.913225.03NoYes049
4R:R:W108 R:R:Y19 35.50373.86YesYes199
5L:L:?1 R:R:E112 46.95059.65YesYes005
6R:R:E112 R:R:W108 40.84343.27YesYes159
7R:R:L285 R:R:R280 11.65682.43YesNo013
8R:R:C282 R:R:L285 20.60754.76YesYes341
9R:R:C282 R:R:L273 37.44243.17YesNo045
10R:R:L270 R:R:L273 40.86764.15NoNo055
11R:R:L270 R:R:L271 49.14782.77NoNo056
12R:R:L267 R:R:L271 50.75535.54NoNo076
13L:L:?1 R:R:L267 53.9226.42YesNo007
14R:R:L292 R:R:Y89 18.167915.24NoYes057
15L:L:?1 R:R:L292 41.28777.33YesNo005
16R:R:D82 R:R:N54 11.899210.77NoYes299
17R:R:D82 R:R:S299 28.96848.83NoNo099
18R:R:M296 R:R:S299 29.24317.67NoNo079
19R:R:L292 R:R:M296 29.57432.83NoNo057
20L:L:?1 R:R:L119 1007.33YesNo007
21R:R:L119 R:R:W264 99.88696.83NoNo079
22R:R:N298 R:R:W264 96.647618.08YesNo299
23R:R:C263 R:R:N298 10.10586.3NoYes089
24R:R:L83 R:R:N54 12.31935.49NoYes079
25R:R:D82 R:R:P303 16.78653.22NoYes299
26R:R:N302 R:R:P303 26.77923.26YesYes299
27R:R:N298 R:R:N302 35.70565.45YesYes299
28R:R:P303 R:R:V57 27.9995.3YesNo299
29R:R:T79 R:R:V57 25.56751.59NoNo099
30R:R:L61 R:R:L75 15.72021.38YesNo078
31R:R:L75 R:R:T79 18.15172.95NoNo089
32R:R:P70 R:R:T151 15.96255.25YesYes056
33R:R:L74 R:R:T151 53.55042.95NoYes086
34R:R:I129 R:R:L74 57.2345.71YesNo098
35R:R:I129 R:R:L78 43.85652.85YesYes299
36R:R:L126 R:R:L78 21.1812.77YesYes289
37R:R:L126 R:R:N298 61.07122.75YesYes289
38R:R:I129 R:R:Y306 18.16793.63YesYes299
39R:R:L126 R:R:Y306 43.48493.52YesYes289
40R:R:L78 R:R:N302 29.60662.75YesYes299
41R:R:A121 R:R:S162 10.04933.42NoNo077
42R:R:S162 R:R:T120 21.58493.2NoNo076
43L:L:?1 R:R:T120 27.134710.74YesNo006
44R:R:S162 R:R:V117 10.04933.23NoNo075
45L:L:?1 R:R:V123 10.04937.89YesNo008
46R:R:R133 R:R:Y306 22.26356.17NoYes299
47R:R:R133 R:R:Y212 27.50635.14NoYes099
48R:R:L249 R:R:V219 12.66661.49NoYes088
49R:R:L249 R:R:L253 21.23762.77NoNo088
50R:R:L253 R:R:Y212 22.78868.21NoYes089
51R:R:L152 R:R:T151 16.46342.95NoYes016
52R:R:M154 R:R:T151 19.57353.01NoYes056
53R:R:C277 R:R:P278 12.01231.88NoNo053
54R:R:C277 R:R:C282 13.33717.28NoYes354
55R:R:F201 R:R:F268 13.95919.65NoYes087
56L:L:?1 R:R:F201 15.88984.84YesNo008
57R:R:M154 R:R:R150 11.64881.24NoNo057
58R:R:L152 R:R:R148 12.66662.43NoNo017
59L:L:?1 R:R:F116 24.65477.26YesYes005
60R:R:F116 R:R:Y193 18.26489.28YesYes157
Download PSN data

2D representation of the global metapath, ligand(s) interactions and
histograms of path distribution according to several parameters
(click on the image to enlarge it 🔍):

A 2D representation of the global communication in the network.

ConSurf Conservation Grade (See documentation): 

 n/a   1    2    3    4    5    6    7    8    9  

Number of shortest communication paths as a function of the average residue correlation.

Number of shortest communication paths as a function of the average interaction strength of their links.

Number of shortest communication paths as a function of the % of hub nodes in each path.

Number of shortest communication paths as a function of the number of nodes in each path.

Number of shortest communication paths as a function of the % of correlated nodes in each path.


2D representation of the interactions of this orthosteric/allosteric ligand.


Links and nodes colored according to ConSurf Conservation Grade (See documentation): 

 n/a   1    2    3    4    5    6    7    8    9  

Node1 Node2 LinkStrength Comm IsNode1Hub? IsNode2Hub? Node1Cons Node2Cons Node1Shell Node2Shell
R:R:K24 R:R:T22 3 0 No No 6 8 1 2
L:L:?1 R:R:K24 4.67 0 Yes No 0 6 0 1
R:R:A88 R:R:V115 3.39 0 No No 5 5 2 1
R:R:L292 R:R:Y89 15.24 0 No Yes 5 7 1 2
R:R:N92 R:R:R111 3.62 0 No Yes 5 5 1 2
L:L:?1 R:R:N92 11.82 0 Yes No 0 5 0 1
R:R:R111 R:R:W108 8 1 Yes Yes 5 9 2 2
R:R:E112 R:R:W108 3.27 1 Yes Yes 5 9 1 2
R:R:L186 R:R:W108 4.56 1 No Yes 7 9 2 2
R:R:W108 R:R:Y189 5.79 1 Yes Yes 9 5 2 2
R:R:E112 R:R:L186 5.3 1 Yes No 5 7 1 2
R:R:E112 R:R:Y189 12.35 1 Yes Yes 5 5 1 2
L:L:?1 R:R:E112 9.65 0 Yes Yes 0 5 0 1
R:R:F116 R:R:Y189 4.13 1 Yes Yes 5 5 1 2
R:R:F116 R:R:Y193 9.28 1 Yes Yes 5 7 1 2
L:L:?1 R:R:F116 7.26 0 Yes Yes 0 5 0 1
R:R:L119 R:R:W264 6.83 0 No No 7 9 1 2
L:L:?1 R:R:L119 7.33 0 Yes No 0 7 0 1
R:R:S162 R:R:T120 3.2 0 No No 7 6 2 1
L:L:?1 R:R:T120 10.74 0 Yes No 0 6 0 1
R:R:I204 R:R:V123 3.07 0 No No 8 8 2 1
L:L:?1 R:R:V123 7.89 0 Yes No 0 8 0 1
R:R:L186 R:R:Y189 8.21 1 No Yes 7 5 2 2
R:R:Y189 R:R:Y193 5.96 1 Yes Yes 5 7 2 2
L:L:?1 R:R:C197 11.56 0 Yes No 0 5 0 1
R:R:F201 R:R:F268 9.65 0 No Yes 8 7 1 2
L:L:?1 R:R:F201 4.84 0 Yes No 0 8 0 1
R:R:L267 R:R:L271 5.54 0 No No 7 6 1 2
L:L:?1 R:R:L267 6.42 0 Yes No 0 7 0 1
R:R:L292 R:R:M296 2.83 0 No No 5 7 1 2
L:L:?1 R:R:L292 7.33 0 Yes No 0 5 0 1
L:L:?1 R:R:A288 2.09 0 Yes No 0 4 0 1
R:R:A295 R:R:L267 1.58 0 No No 7 7 2 1
R:R:F116 R:R:G166 1.51 1 Yes No 5 8 1 2
R:R:L124 R:R:T120 1.47 0 No No 5 6 2 1
L:L:?1 R:R:V115 0.99 0 Yes No 0 5 0 1

Location and physicochemical properties of the interaction partners of this ligand

Interactions of this ligand

Similarities between the interactions of this ligand and those of other networks

PDB Summary
PDB 7EW1_nogp
Class
SubFamily
Type
SubType
Species
Ligand
Other Ligand(s)
Protein Partners
PDB Resolution
Date
D.O.I.
Net Summary
Imin 2.75
Number of Linked Nodes 228
Number of Links 248
Number of Hubs 31
Number of Links mediated by Hubs 117
Number of Communities 7
Number of Nodes involved in Communities 47
Number of Links involved in Communities 63
Path Summary
Number Of Nodes in MetaPath 61
Number Of Links MetaPath 60
Number of Shortest Paths 27693
Length Of Smallest Path 3
Average Path Length 11.5815
Length of Longest Path 25
Minimum Path Strength 1.13
Average Path Strength 5.7908
Maximum Path Strength 14.445
Minimum Path Correlation 0.7
Average Path Correlation 0.923707
Maximum Path Correlation 0.99
Minimum % Of Corr. Nodes 5
Average % Of Corr. Nodes 54.4434
Maximum % Of Corr. Nodes 100
Minimum Path Hubs % 0
Average Path Hubs % 42.1871
Maximum Path Hubs % 100
AnnotationTypeLinks
Gene OntologyMolecular Function
Gene OntologyBiological Process
Gene OntologyCellular Component
SCOP2Domain Identifier• Ras-like P-loop GTPases   • Transducin (heterotrimeric G protein), gamma chain
SCOP2Family Identifier• Ras-like P-loop GTPases   • Transducin (heterotrimeric G protein), gamma chain
Membrane Protein Annotations-• Orientations of Proteins in Membranes database (OPM)   • Protein Data Bank of Transmembrane Proteins (PDBTM)   • MemProtMD


Details about the values in these tables can be found in the corresponding documentation page .
CodeJ8C
PDB ResiduesL:L:?1
Environment DetailsOpen EMBL-EBI Page
CodeJ8C
NameSiponimod
Synonyms
  • Siponimod fumarate
  • Siponimod
Identifier
FormulaC29 H35 F3 N2 O3
Molecular Weight516.595
SMILES
PubChem72959169
Formal Charge0
Total Atoms72
Total Chiral Atoms0
Total Bonds75
Total Aromatic Bonds12

PDBsumOpen PDBsum Page
ChainR
ProteinReceptor
UniProtQ9H228
Sequence
>7EW1_nogp_Chain_R
VIVLHYNYT GKLRGRADA VVCLAVCAF IVLENLAVL LVLGRHAPM 
FLLLGSLTL SDLLAGAAY AANILLSGP LTLKLSPAL WFAREGGVF 
VALTASVLS LLAIALERS LTMARRGPA PVSSRGRTL AMAAAAWGV 
SLLLGLLPA LGWNCLGRL DACSTVLPL YAKAYVLFC VLAFVGILA 
AICALYARI YCQVRANAR RLRKPRSLA LLRTLSVVL LAFVACWGP 
LFLLLLLDV ACPARTCPV LLQADPFLG LAMANSLLN PIIYTLTN


Click on each residue to open a popup with some information about it.

ConSurf Conservation Grade (See documentation): 

 n/a   1    2    3    4    5    6    7    8    9  




This receptor, from the same or other species and bound to the same or other ligands, is also present in the following networks:
Show PDB Class SubFamily Type SubType Species Orthosteric Ligand Other Ligand(s) Protein Partners Resolution Date DOI
7EW1ALipidLysophospholipidS1P5Homo sapiensSiponimod-Gi1/β1/γ23.42021-09-29doi.org/10.1038/s41422-021-00566-x
7EW1 (No Gprot) ALipidLysophospholipidS1P5Homo sapiensSiponimod-3.42021-09-29doi.org/10.1038/s41422-021-00566-x
7YXAALipidLysophospholipidS1P5Homo sapiensONO-5430608--2.22022-08-10doi.org/10.1038/s41467-022-32447-1




You can download a compressed (zip) file with structure(s), 3D outputs (as PyMol and VMD scripts) and numerical data files (as csv and plain text files).

Download 7EW1_nogp.zip



You can click to copy the link of this page to easily come back here later

or use this QR code to link and share this page.



You can also  read or  download a guide explaining the meaning of all files and numerical data.