Color ConSurf Grade
      No Conservation data available
      1
      2
      3
      4
      5
      6
      7
      8
      9

Index: hub id, click on each number to highlight the corresponding hub in the 3D visualization.

Hub: the hub being considered.

Avg Int. Strength: the average interaction strength of all the links of the corresponding hub.

Num Of Links: the number of links of the corresponding hub.

Community: the id of the community the link belong to, otherwise 0.

ConSurf: this column reports the ConSurf conservation grades of each hub.

Index Hub Avg Int. Strength Num Of Links Community ConSurf
1R:R:M42 3.6325423
2R:R:Q45 7.6625425
3R:R:Y46 10.01822
4R:R:E47 6.344526
5R:R:C48 4.95429
6R:R:Y49 5.538523
7R:R:M53 2.415402
8R:R:W69 6.92333627
9R:R:D70 5.444539
10R:R:W72 5.746535
11R:R:L73 6.18833635
12R:R:W75 6.09333639
13R:R:V78 4.5825437
14R:R:C88 4.5875439
15R:R:Y91 6.49833635
16R:R:F95 6.92667635
17R:R:V101 2.7875437
18R:R:K103 9.965438
19R:R:W111 8.43667639
20R:R:F112 2.4405
21R:R:H114 9.7125404
22R:R:N123 5.6325468
23R:R:Y124 8.812534
24R:R:E133 5.2625401
25R:R:F142 5.65406
26R:R:H149 7.538517
27R:R:L156 4.4075419
28R:R:F163 4.492517
29R:R:Q172 7.075447
30R:R:I174 5.215419
31R:R:H177 9.39409
32R:R:K178 4.3625416
33R:R:L180 3.258519
34R:R:F181 3.915618
35R:R:F184 8.925408
36R:R:N187 6.1275418
37R:R:N201 7.21404
38R:R:P209 4.11455
39R:R:Q216 6.2075406
40R:R:I218 3.575415
41R:R:L220 6.7925417
42R:R:Y221 4.04618
43R:R:L222 3.646515
44R:R:N226 9.0275408
45R:R:Y227 5.79618
46R:R:F228 5.72515
47R:R:W229 6.45286719
48R:R:M230 3.4075419
49R:R:L231 6.34408
50R:R:I235 5.2625406
51R:R:Y236 8.614548
52R:R:L237 3.3275409
53R:R:H238 9.285408
54R:R:T239 5.1875447
55R:R:Q250 8.4175446
56R:R:Y255 5.446548
57R:R:L258 3.2225406
58R:R:W260 5.11419
59R:R:F262 6.222514
60R:R:P263 4.13714719
61R:R:H270 6.90833618
62R:R:R274 9.945617
63R:R:Y277 7.78403
64R:R:Y278 7.67333616
65R:R:C282 3.9325459
66R:R:W283 13.344518
67R:R:S285 6.53515
68R:R:T288 8.53333615
69R:R:L290 4.285413
70R:R:L291 6.6475415
71R:R:H295 6.1875416
72R:R:P297 4.636518
73R:R:I298 5.94417
74R:R:L339 2.485407
75R:R:L341 5.795619
76R:R:L345 4.354519
77R:R:E348 6.8725408
78R:R:F349 7.592518
79R:R:H370 8.15417
80R:R:M373 6.4625417
81R:R:H374 13.09419
82R:R:F375 5.536577
83R:R:V380 5.494519
84R:R:S381 5.28418
85R:R:F384 5.5375818
86R:R:C385 4.7125419
87R:R:V391 4.045419
88E:E:L36 6.295425
89E:E:R37 8.06424
90E:E:C40 4.55409
91E:E:L41 4.685425
92E:E:F44 7.432529
93E:E:M48 7.63429
94E:E:V51 5.7825425
95E:E:L55 6.1925405
96E:E:W56 5.3425425
97E:E:W59 8.705627
98E:E:I63 3.305425
99E:E:Y66 5.33333629
100E:E:R67 6.806525
101E:E:T73 5.1725428
102E:E:M76 5.3325404
103E:E:W84 8.616527
104E:E:F92 8.02833625
105E:E:F93 5.97667629
106E:E:H97 6.38529
107E:E:Y100 7.8375407
108E:E:F101 6.394529
109E:E:L119 4.73408
   

Color ConSurf Grade
      No Conservation data available
      1
      2
      3
      4
      5
      6
      7
      8
      9

Index: link id, click on each number to highlight the corresponding link in the 3D visualization.

Node1 Node2: the two nodes of the corresponding link.

Recurrence: the relative Recurrence in the pool of shortest paths.

Int. Strength: the interaction strength between the two nodes.

Hub1?, Hub2?: "Yes" if the corresponding node has more than 3 links, otherwise "No".

Community: the id of the community the link belong to, otherwise 0.

ConSurf1, ConSurf2: these columns report the ConSurf conservation grades of the two nodes involved in a link.

Index Node1 Node2 Recurrence Int. Strength Hub1? Hub2? Community ConSurf1 ConSurf2
1R:R:I41 R:R:R38 54.930810.02NoNo065
2E:E:R67 R:R:R38 54.746918.13YesNo055
3E:E:I63 E:E:R67 13.78482.51YesYes255
4R:R:I41 R:R:W72 53.82332.35NoYes365
5E:E:R67 R:R:M42 40.35196.2YesYes253
6E:E:Y66 R:R:M42 23.51572.39YesYes293
7E:E:I63 E:E:W59 13.52514.7YesYes257
8R:R:Q45 R:R:W69 10.387917.52YesYes257
9E:E:F93 R:R:Q45 17.93117.03YesYes295
10E:E:F101 R:R:Y46 12.188410.32YesYes292
11E:E:F101 E:E:H97 13.406610.18YesYes299
12R:R:W69 R:R:Y49 18.34713.86YesYes273
13E:E:F93 R:R:Y49 10.18265.16YesYes293
14R:R:W72 R:R:Y124 40.951215.43YesYes354
15R:R:D70 R:R:Y124 40.651610.34YesYes394
16R:R:D70 R:R:G71 48.58863.35YesNo094
17R:R:G71 R:R:W69 31.4998.44NoYes047
18E:E:P85 R:R:G71 17.11834.06NoNo094
19R:R:F95 R:R:W72 95.25585.01YesYes355
20R:R:N123 R:R:Q126 12.35599.24YesNo685
21R:R:E99 R:R:Q126 13.7216.37NoNo055
22R:R:C127 R:R:E99 15.91226.08NoNo095
23R:R:D94 R:R:F95 99.83329.55NoYes355
24R:R:E133 R:R:K134 99.95651.35YesNo013
25R:R:K134 R:R:T131 99.97861.5NoNo031
26R:R:D94 R:R:T131 1001.45NoNo051
27R:R:E133 R:R:K136 99.86012.7YesNo012
28R:R:K136 R:R:T137 99.8341.5NoNo024
29R:R:T137 R:R:Y367 99.80726.24NoNo046
30R:R:L141 R:R:Y367 99.77968.21NoNo066
31R:R:H370 R:R:L141 99.539410.29YesNo176
32R:R:H370 R:R:H374 23.5979.55YesYes179
33R:R:H149 R:R:H374 21.722214.33YesYes179
34R:R:F181 R:R:V380 11.56993.93YesYes189
35R:R:L345 R:R:V380 12.36642.98YesYes199
36R:R:L345 R:R:Y227 29.92122.34YesYes198
37R:R:F349 R:R:Y227 42.21184.13YesYes188
38R:R:E348 R:R:F349 75.206613.99YesYes088
39R:R:E348 R:R:M373 75.48698.12YesYes087
40R:R:H370 R:R:M373 76.09483.94YesYes177
41R:R:H149 R:R:T191 23.29428.21YesNo177
42R:R:F184 R:R:N226 14.43216.92YesYes088
43R:R:F184 R:R:L180 17.87756.09YesYes089
44R:R:L180 R:R:W229 18.70312.28YesYes199
45R:R:L176 R:R:Y236 12.094.69NoYes098
46R:R:N187 R:R:T191 15.96824.39YesNo187
47R:R:F349 R:R:I298 24.09223.77YesYes187
48R:R:G224 R:R:I298 24.40243.53NoYes057
49R:R:G224 R:R:P263 24.16682.03NoYes059
50R:R:G259 R:R:P263 13.65692.03NoYes099
51R:R:F349 R:R:H295 12.483413.58YesYes186
52R:R:H295 R:R:I294 12.03992.65YesNo167
53R:R:H270 R:R:I294 10.48896.63YesNo187
54R:R:F262 R:R:P263 10.05784.33YesYes149
55R:R:C232 R:R:W229 11.07745.22NoYes079
56R:R:F262 R:R:L258 10.4243.65YesYes046
57R:R:L231 R:R:L258 14.15022.77YesYes086
58R:R:C232 R:R:Y255 12.34859.41NoYes078
59E:E:F92 E:E:F93 42.99866.43YesYes259
60E:E:F92 E:E:L41 46.80563.65YesYes255
61E:E:C40 E:E:L69 11.29123.17YesNo098
62E:E:L41 E:E:L69 12.39984.15YesNo258
63E:E:F44 E:E:L41 33.06944.87YesYes295
64E:E:F44 E:E:Y100 21.2066.19YesYes097
65E:E:F101 E:E:Y100 22.97933.09YesYes097
66E:E:F44 E:E:M48 36.227314.93YesYes299
67E:E:F44 E:E:S65 15.84922.64YesNo295
68E:E:D47 E:E:M48 13.58855.54NoYes249
69E:E:D47 E:E:S65 13.58778.83NoNo245
70E:E:D47 E:E:V51 22.64974.38NoYes245
71E:E:V51 E:E:W56 11.32976.13YesYes255
72E:E:M48 E:E:W56 20.38396.98YesYes295
73E:E:L55 E:E:V51 27.18438.94YesYes055
74E:E:T73 E:E:W84 15.19778.49YesYes287
75E:E:P85 E:E:W84 15.549910.81NoYes297
Download PSN data

2D representation of the global metapath, ligand(s) interactions and
histograms of path distribution according to several parameters
(click on the image to enlarge it 🔍):

A 2D representation of the global communication in the network.

ConSurf Conservation Grade (See documentation): 

 n/a   1    2    3    4    5    6    7    8    9  

Number of shortest communication paths as a function of the average residue correlation.

Number of shortest communication paths as a function of the average interaction strength of their links.

Number of shortest communication paths as a function of the % of hub nodes in each path.

Number of shortest communication paths as a function of the number of nodes in each path.

Number of shortest communication paths as a function of the % of correlated nodes in each path.


PDB Summary
PDB 7KNT
Class B1
SubFamily Peptide
Type Calcitonin
SubType CT Like
Species Homo sapiens
Ligand -
Other Ligand(s) -
Protein Partners RAMP1
PDB Resolution 3.15
Date 2021-02-24
D.O.I. 10.1126/science.abf7258
Net Summary
Imin 1.7
Number of Linked Nodes 428
Number of Links 556
Number of Hubs 109
Number of Links mediated by Hubs 376
Number of Communities 11
Number of Nodes involved in Communities 149
Number of Links involved in Communities 232
Path Summary
Number Of Nodes in MetaPath 76
Number Of Links MetaPath 75
Number of Shortest Paths 378770
Length Of Smallest Path 3
Average Path Length 24.593
Length of Longest Path 42
Minimum Path Strength 1.225
Average Path Strength 6.08021
Maximum Path Strength 26
Minimum Path Correlation 0.71
Average Path Correlation 0.964749
Maximum Path Correlation 1
Minimum % Of Corr. Nodes 3.0303
Average % Of Corr. Nodes 41.3156
Maximum % Of Corr. Nodes 100
Minimum Path Hubs % 0
Average Path Hubs % 57.4022
Maximum Path Hubs % 100
AnnotationTypeLinks
Gene OntologyMolecular Function
Gene OntologyBiological Process
Gene OntologyCellular Component
SCOP2Domain Identifier
SCOP2Family Identifier
Membrane Protein Annotations-• Orientations of Proteins in Membranes database (OPM)   • Protein Data Bank of Transmembrane Proteins (PDBTM)   • MemProtMD


Details about the values in these tables can be found in the corresponding documentation page .
PDBsumOpen PDBsum Page
ChainR
ProteinReceptor
UniProtQ16602
Sequence
>7KNT_Chain_R
QLGVTRNKI MTAQYECYQ KIMQYCNRT WDGWLCWND VAAGTESMQ 
LCPDYFQDF DPSEKVTKI CDNWFRHPA SNRTWTNYT QCNVNTHEK 
VKTALNLFY LTIIGHGLS IASLLISLG IFFYFKSLS CQRITLHKN 
LFFSFVCNS VVTIIHLTA VANNQALVA TNPVSCKVS QFIHLYLMG 
CNYFWMLCE GIYLHTLIV VAVFAEKQH LMWYYFLGW GFPLIPACI 
HAIARSLYY NDNCWISSD THLLYIIHG PICAALLVN LFFLLNIVR 
VLITKNLYM KAVRATLIL VPLLGIEFV LIPWEVYDY IMHILMHFQ 
GLLVSTIFC FFNGEVQAI LRRNWNQY


Click on each residue to open a popup with some information about it.

ConSurf Conservation Grade (See documentation): 

 n/a   1    2    3    4    5    6    7    8    9  

ChainE
ProteinRAMP1
UniProtO60894
Sequence
>7KNT_Chain_E
EANYGALLR ELCLTQFQV DMEAVGETL WCDWGRTIR SYRELADCT 
WHMAEKLGC FWPNAEVDR FFLAVHGRY FRSCPISGR AVRDPPGSI 
LYPFIVVPI TVTLLVTAL VVWQSK


Click on each residue to open a popup with some information about it.

ConSurf Conservation Grade (See documentation): 

 n/a   1    2    3    4    5    6    7    8    9  




This receptor, from the same or other species and bound to the same or other ligands, is also present in the following networks:
Show PDB Class SubFamily Type SubType Species Orthosteric Ligand Other Ligand(s) Protein Partners Resolution Date DOI
6E3YB1PeptideCalcitoninCT LikeHomo sapiensCalcitonin gene-related peptide-1-Gs/&β;1/&γ;2; RAMP13.32018-09-1910.1038/s41586-018-0535-y
7KNUB1PeptideCalcitoninCT LikeHomo sapiensCalcitonin gene-related peptide-1-RAMP13.492021-02-2410.1126/science.abf7258




You can download a compressed (zip) file with structure(s), 3D outputs (as PyMol and VMD scripts) and numerical data files (as csv and plain text files).

Download 7KNT.zip



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