Color ConSurf Grade
      No Conservation data available
      1
      2
      3
      4
      5
      6
      7
      8
      9

Index: hub id, click on each number to highlight the corresponding hub in the 3D visualization.

Hub: the hub being considered.

Avg Int. Strength: the average interaction strength of all the links of the corresponding hub.

Num Of Links: the number of links of the corresponding hub.

Community: the id of the community the link belong to, otherwise 0.

ConSurf: this column reports the ConSurf conservation grades of each hub.

Index Hub Avg Int. Strength Num Of Links Community ConSurf
1R:R:L47 6.5375416
2R:R:N58 5.635409
3R:R:I62 3.365407
4R:R:D86 4.808509
5R:R:L87 6.68447
6R:R:V89 7.172517
7R:R:P93 6.3925416
8R:R:Y94 7.93333617
9R:R:W106 5.5275408
10R:R:F108 6.8506
11R:R:M120 3.2475415
12R:R:V128 5.1125427
13R:R:I131 5.024529
14R:R:R138 4.885429
15R:R:Y139 4.776508
16R:R:N175 5.415415
17R:R:S180 3.31514
18R:R:Y183 5.755402
19R:R:D184 4.9425434
20R:R:R186 6.47403
21R:R:I187 6.1375431
22R:R:F192 8.65414
23R:R:V215 3.13406
24R:R:W224 5.3405
25R:R:F254 4.6525406
26R:R:F257 8.7025428
27R:R:W264 6.6025408
28R:R:F290 8.995434
29R:R:Y294 9.596535
30R:R:L295 2.55405
31R:R:Y308 4.77833629
32R:R:F315 4.7875408
33R:R:Y319 3.85667605
34R:R:I322 4.212556
35L:L:?1 8.45625810
   

Color ConSurf Grade
      No Conservation data available
      1
      2
      3
      4
      5
      6
      7
      8
      9

Index: link id, click on each number to highlight the corresponding link in the 3D visualization.

Node1 Node2: the two nodes of the corresponding link.

Recurrence: the relative Recurrence in the pool of shortest paths.

Int. Strength: the interaction strength between the two nodes.

Hub1?, Hub2?: "Yes" if the corresponding node has more than 3 links, otherwise "No".

Community: the id of the community the link belong to, otherwise 0.

ConSurf1, ConSurf2: these columns report the ConSurf conservation grades of the two nodes involved in a link.

Index Node1 Node2 Recurrence Int. Strength Hub1? Hub2? Community ConSurf1 ConSurf2
1R:R:G288 R:R:V291 11.49963.68NoNo034
2R:R:L47 R:R:Y94 13.610417.58YesYes167
3R:R:Y298 R:R:Y94 19.9665.96NoYes077
4R:R:Y294 R:R:Y298 19.79628.94YesNo057
5R:R:F290 R:R:Y294 50.443812.38YesYes345
6R:R:F290 R:R:R186 38.075913.9YesYes043
7R:R:E287 R:R:R186 19.04384.65NoYes043
8R:R:E287 R:R:G288 17.18761.64NoNo043
9R:R:D54 R:R:D86 60.66226.65NoYes089
10R:R:D86 R:R:V89 49.56782.92YesYes097
11R:R:V89 R:R:Y94 22.829411.36YesYes177
12R:R:D86 R:R:S301 15.51294.42YesNo099
13R:R:S301 R:R:Y94 15.1273.82NoYes097
14R:R:D54 R:R:N58 54.38769.42NoYes089
15R:R:A83 R:R:N58 46.71614.69NoYes099
16R:R:I322 R:R:S64 18.95894.64YesNo068
17R:R:S64 R:R:Y319 20.25555.09NoYes085
18R:R:F315 R:R:Y319 31.56989.28YesYes085
19R:R:F315 R:R:V65 36.28152.62YesNo087
20R:R:V65 R:R:V80 37.47784.81NoNo076
21R:R:I62 R:R:V80 38.66643.07YesNo076
22R:R:A83 R:R:I62 45.58543.25NoYes097
23R:R:R153 R:R:T157 16.435115.52NoNo077
24R:R:L77 R:R:T157 21.24334.42NoNo057
25R:R:I161 R:R:L77 23.64362.85NoNo075
26R:R:I161 R:R:S81 40.17527.74NoNo079
27R:R:N130 R:R:S81 42.5062.98NoNo089
28R:R:L82 R:R:N130 44.8296.87NoNo098
29R:R:I131 R:R:L82 47.14442.85YesNo099
30R:R:I131 R:R:V128 43.20444.61YesYes297
31R:R:H208 R:R:V128 87.12669.69NoYes057
32R:R:H208 R:R:W264 49.37494.23NoYes058
33R:R:L267 R:R:W264 67.20695.69NoYes068
34R:R:L267 R:R:Y294 35.26679.38NoYes065
35R:R:I131 R:R:N304 57.50952.83YesNo099
36R:R:N300 R:R:N304 19.41816.81NoNo099
37R:R:N300 R:R:W264 19.510711.3NoYes098
38R:R:F78 R:R:I161 14.65233.77NoNo077
39R:R:I131 R:R:Y308 26.24846.04YesYes299
40R:R:I125 R:R:T168 11.64243.04NoNo077
41L:L:?1 R:R:I125 17.36135.98YesNo007
42L:L:?1 R:R:T191 17.18766.18YesNo004
43R:R:T191 R:R:Y294 16.369511.24NoYes045
44L:L:?1 R:R:L267 63.27085.8YesNo006
45L:L:?1 R:R:M120 73.43143.56YesYes105
46R:R:F108 R:R:W106 50.62514.01YesYes068
47R:R:C113 R:R:W106 80.63215.22NoYes098
48R:R:C113 R:R:C190 85.60621.82NoNo099
49R:R:A117 R:R:C190 95.0491.81NoNo059
50R:R:A117 R:R:L181 1003.15NoNo053
51R:R:L181 R:R:N175 69.19816.87NoYes135
52R:R:L172 R:R:N175 36.32795.49NoYes075
53L:L:?1 R:R:L172 40.58044.64YesNo007
54R:R:F192 R:R:N175 36.26614.83YesYes145
55L:L:?1 R:R:F192 91.792124.51YesYes104
56R:R:L181 R:R:S180 35.57154.5NoYes134
57R:R:F192 R:R:S180 54.46482.64YesYes144
58R:R:F108 R:R:V99 15.26596.55YesNo064
59R:R:V99 R:R:Y103 10.18372.52NoNo044
60R:R:W106 R:R:Y183 20.340411.58YesYes082
61R:R:F108 R:R:H112 20.340415.84YesNo065
62R:R:E111 R:R:K114 10.18376.75NoNo027
63R:R:E111 R:R:H112 15.26594.92NoNo025
64R:R:M120 R:R:V124 37.89073.04YesNo057
65R:R:H208 R:R:V124 39.33782.77NoNo057
66R:R:P212 R:R:V128 55.55683.53NoYes097
67R:R:F260 R:R:V128 23.32722.62NoYes297
68R:R:P212 R:R:T132 28.40553.5NoNo098
69R:R:T132 R:R:V215 24.85144.76NoYes086
70R:R:L211 R:R:V215 24.30732.98NoYes056
71R:R:L211 R:R:P212 25.78534.93NoNo059
72R:R:C143 R:R:Y139 21.6644.03NoYes078
73R:R:C219 R:R:Y139 40.12129.41NoYes078
74R:R:C219 R:R:V215 43.16971.71NoYes076
75R:R:C143 R:R:H144 15.66334.42NoNo076
76R:R:S197 R:R:V178 14.13521.62NoNo053
77R:R:S180 R:R:V178 17.59283.23YesNo043
78R:R:I285 R:R:R186 19.03223.76NoYes033
79R:R:F290 R:R:Q194 13.1284.68YesNo044
80R:R:F260 R:R:I213 32.03675.02NoNo096
81R:R:A261 R:R:I213 23.19213.25NoNo056
82R:R:F254 R:R:S217 18.66562.64YesNo065
83R:R:S217 R:R:V258 20.18211.62NoNo054
84R:R:A261 R:R:V258 21.6911.7NoNo054
85R:R:F250 R:R:W224 10.963213.03NoYes065
86R:R:F250 R:R:F254 12.52228.57NoYes066
87R:R:I270 R:R:S293 11.5151.55NoNo045
88R:R:I270 R:R:I285 13.40975.89NoNo043
89R:R:H144 R:R:M146 12.54531.31NoNo065
90R:R:D86 R:R:N304 42.44422.69YesNo099
91R:R:M120 R:R:V89 38.33843.04YesYes157
92R:R:F260 R:R:I131 10.15288.79NoYes299
93R:R:I187 R:R:Y294 11.1336.04YesYes315
Download PSN data

2D representation of the global metapath, ligand(s) interactions and
histograms of path distribution according to several parameters
(click on the image to enlarge it 🔍):

A 2D representation of the global communication in the network.

ConSurf Conservation Grade (See documentation): 

 n/a   1    2    3    4    5    6    7    8    9  

Number of shortest communication paths as a function of the average residue correlation.

Number of shortest communication paths as a function of the average interaction strength of their links.

Number of shortest communication paths as a function of the % of hub nodes in each path.

Number of shortest communication paths as a function of the number of nodes in each path.

Number of shortest communication paths as a function of the % of correlated nodes in each path.


2D representation of the interactions of this orthosteric/allosteric ligand.


Links and nodes colored according to ConSurf Conservation Grade (See documentation): 

 n/a   1    2    3    4    5    6    7    8    9  

Node1 Node2 LinkStrength Comm IsNode1Hub? IsNode2Hub? Node1Cons Node2Cons Node1Shell Node2Shell
R:R:P93 R:R:V89 8.84 1 Yes Yes 6 7 2 2
R:R:M120 R:R:V89 3.04 1 Yes Yes 5 7 1 2
R:R:M120 R:R:P93 3.35 1 Yes Yes 5 6 1 2
R:R:F118 R:R:L172 10.96 0 No No 6 7 2 1
R:R:M120 R:R:V124 3.04 1 Yes No 5 7 1 2
L:L:?1 R:R:M120 3.56 1 Yes Yes 0 5 0 1
L:L:?1 R:R:G121 5.74 1 Yes No 0 4 0 1
R:R:I125 R:R:T168 3.04 0 No No 7 7 1 2
L:L:?1 R:R:I125 5.98 1 Yes No 0 7 0 1
R:R:L172 R:R:N175 5.49 0 No Yes 7 5 1 2
L:L:?1 R:R:L172 4.64 1 Yes No 0 7 0 1
R:R:N175 R:R:S180 4.47 1 Yes Yes 5 4 2 2
R:R:F192 R:R:N175 4.83 1 Yes Yes 4 5 1 2
R:R:F192 R:R:S180 2.64 1 Yes Yes 4 4 1 2
R:R:T191 R:R:Y294 11.24 0 No Yes 4 5 1 2
L:L:?1 R:R:T191 6.18 1 Yes No 0 4 0 1
R:R:F192 R:R:V204 2.62 1 Yes No 4 5 1 1
L:L:?1 R:R:F192 24.51 1 Yes Yes 0 4 0 1
L:L:?1 R:R:V204 11.24 1 Yes No 0 5 0 1
R:R:L267 R:R:W264 5.69 0 No Yes 6 8 1 2
R:R:L267 R:R:Y294 9.38 0 No Yes 6 5 1 2
L:L:?1 R:R:L267 5.8 1 Yes No 0 6 0 1
R:R:I125 R:R:W129 2.35 0 No No 7 5 1 2

Location and physicochemical properties of the interaction partners of this ligand

Interactions of this ligand

Similarities between the interactions of this ligand and those of other networks

PDB Summary
PDB 7VH0_nogp
Class
SubFamily
Type
SubType
Species
Ligand
Other Ligand(s)
Protein Partners
PDB Resolution
Date
D.O.I.
Net Summary
Imin 2.62
Number of Linked Nodes 254
Number of Links 280
Number of Hubs 35
Number of Links mediated by Hubs 132
Number of Communities 5
Number of Nodes involved in Communities 35
Number of Links involved in Communities 45
Path Summary
Number Of Nodes in MetaPath 94
Number Of Links MetaPath 93
Number of Shortest Paths 68959
Length Of Smallest Path 3
Average Path Length 14.9019
Length of Longest Path 30
Minimum Path Strength 1.215
Average Path Strength 5.64084
Maximum Path Strength 17.755
Minimum Path Correlation 0.7
Average Path Correlation 0.928894
Maximum Path Correlation 0.99
Minimum % Of Corr. Nodes 5.26316
Average % Of Corr. Nodes 46.3613
Maximum % Of Corr. Nodes 100
Minimum Path Hubs % 0
Average Path Hubs % 41.5794
Maximum Path Hubs % 100
AnnotationTypeLinks
Gene OntologyMolecular Function
Gene OntologyBiological Process
Gene OntologyCellular Component
SCOP2Domain Identifier• Ras-like P-loop GTPases   • G protein-coupled receptor-like
SCOP2Family Identifier• Ras-like P-loop GTPases   • G protein-coupled receptor-like
Membrane Protein Annotations-• Orientations of Proteins in Membranes database (OPM)   • Protein Data Bank of Transmembrane Proteins (PDBTM)   • MemProtMD


Details about the values in these tables can be found in the corresponding documentation page .
CodeJEV
PDB ResiduesL:L:?1
Environment DetailsOpen EMBL-EBI Page
CodeJEV
NameRamelteon
SynonymsRamelteon
Identifier
FormulaC16 H21 N O2
Molecular Weight259.343
SMILES
PubChem208902
Formal Charge0
Total Atoms40
Total Chiral Atoms1
Total Bonds42
Total Aromatic Bonds6

PDBsumOpen PDBsum Page
ChainR
ProteinReceptor
UniProtP49286
Sequence
>7VH0_nogp_Chain_R
WVAPALSAV LIVTTAVDV VGNLLVILS VLRNRKLRN AGNLFLVSL 
ALADLVVAF YPYPLILVA IFYDGWAFG EEHCKASAF VMGLSVIGS 
VWNITAIAI NRYLYICHS MAYHRIYRR WHTPLHICL IWLLTVVAL 
LPNFFVGSL EYDPRIYSC TFIQTASTQ YTAAVVVIH FLLPIAVVS 
FCYLRIWVL VLQARRKAK SFLTMFVVF VIFAICWAP LNCIGLAVA 
INPQEMAPQ IPEGLFVTS YLLAYFNSC LNAIVYGLL NQNFRREYK 
RIL


Click on each residue to open a popup with some information about it.

ConSurf Conservation Grade (See documentation): 

 n/a   1    2    3    4    5    6    7    8    9  




This receptor, from the same or other species and bound to the same or other ligands, is also present in the following networks:
Show PDB Class SubFamily Type SubType Species Orthosteric Ligand Other Ligand(s) Protein Partners Resolution Date DOI
7VH0AMelatoninMelatoninMT2Homo sapiensRamelteon-Gi1/β1/γ13.462022-03-02doi.org/10.1038/s41467-022-28111-3
7VH0 (No Gprot) AMelatoninMelatoninMT2Homo sapiensRamelteon-3.462022-03-02doi.org/10.1038/s41467-022-28111-3
6ME6AMelatoninMelatoninMT2Homo sapiens2-Phenylmelatonin--2.82019-04-24doi.org/10.1038/s41586-019-1144-0
6ME7AMelatoninMelatoninMT2Homo sapiens2-Phenylmelatonin--3.22019-04-24doi.org/10.1038/s41586-019-1144-0
6ME8AMelatoninMelatoninMT2Homo sapiens2-Phenylmelatonin--3.12019-04-24doi.org/10.1038/s41586-019-1144-0
6ME9AMelatoninMelatoninMT2Homo sapiensRamelteon--3.32019-04-24doi.org/10.1038/s41586-019-1144-0




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Download 7VH0_nogp.zip



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