Color ConSurf Grade
      No Conservation data available
      1
      2
      3
      4
      5
      6
      7
      8
      9

Index: hub id, click on each number to highlight the corresponding hub in the 3D visualization.

Hub: the hub being considered.

Avg Int. Strength: the average interaction strength of all the links of the corresponding hub.

Num Of Links: the number of links of the corresponding hub.

Community: the id of the community the link belong to, otherwise 0.

ConSurf: this column reports the ConSurf conservation grades of each hub.

Index Hub Avg Int. Strength Num Of Links Community ConSurf
1R:R:R18 3.56414
2R:R:Y19 5.10833615
3R:R:Y22 5.325616
4R:R:Y26 3.97167618
5R:R:N37 3.575409
6R:R:F44 4.0125446
7R:R:Y47 6.068535
8R:R:V55 2.8175407
9R:R:I56 4.4575426
10R:R:F57 4.59667627
11R:R:D65 5.555409
12R:R:R75 7.794516
13R:R:Y78 4.14515
14R:R:Y79 6.988515
15R:R:W84 6.71125818
16R:R:K98 5.1525416
17R:R:Y107 4.7875405
18R:R:R115 3.8975428
19R:R:Y122 5.69407
20R:R:D134 5.0425428
21R:R:W142 5.07429
22R:R:R156 7.216515
23R:R:C168 9.5375419
24R:R:F169 6.03429714
25R:R:V170 4.36515
26R:R:K207 6.0875454
27R:R:F243 6.635409
28R:R:Y246 5.17667616
29R:R:H247 10.165408
30R:R:F250 5.4925415
31R:R:F254 4.295404
32R:R:V256 3.645402
33R:R:K257 6.16415
34R:R:H274 10.805415
35R:R:Y292 5.125409
36R:R:Y293 5.8325447
37R:R:F294 3.8875407
38R:R:F299 6.48548
39L:L:?1 5.686321910
   

Color ConSurf Grade
      No Conservation data available
      1
      2
      3
      4
      5
      6
      7
      8
      9

Index: link id, click on each number to highlight the corresponding link in the 3D visualization.

Node1 Node2: the two nodes of the corresponding link.

Recurrence: the relative Recurrence in the pool of shortest paths.

Int. Strength: the interaction strength between the two nodes.

Hub1?, Hub2?: "Yes" if the corresponding node has more than 3 links, otherwise "No".

Community: the id of the community the link belong to, otherwise 0.

ConSurf1, ConSurf2: these columns report the ConSurf conservation grades of the two nodes involved in a link.

Index Node1 Node2 Recurrence Int. Strength Hub1? Hub2? Community ConSurf1 ConSurf2
1R:R:L271 R:R:R18 19.76534.86NoYes034
2R:R:Y22 R:R:Y26 14.95193.97YesYes168
3L:L:?1 R:R:Y26 37.49522.71YesYes108
4L:L:?1 R:R:V170 10.64643.44YesYes105
5R:R:F169 R:R:R75 16.556413.9YesYes146
6L:L:?1 R:R:R75 41.50448.41YesYes106
7R:R:K98 R:R:Y26 52.83193.58YesYes168
8R:R:K98 R:R:R75 47.7039.9YesYes166
9R:R:F294 R:R:P289 11.23122.89YesNo079
10R:R:N37 R:R:P289 89.95383.26YesNo099
11R:R:D65 R:R:N37 93.11666.73YesYes099
12R:R:D65 R:R:S285 98.6114.42YesNo098
13R:R:Q68 R:R:S285 99.4192.89NoNo078
14R:R:K98 R:R:Q68 1004.07YesNo067
15R:R:P289 R:R:Y293 78.28789.74NoYes097
16R:R:F44 R:R:Y293 73.20893.09YesYes467
17R:R:F44 R:R:V55 75.53292.62YesYes067
18R:R:V55 R:R:Y47 72.67412.52YesYes075
19R:R:R53 R:R:Y47 66.33324.12NoYes365
20R:R:D128 R:R:R53 65.76765.96NoNo056
21R:R:D134 R:R:F57 30.39253.58YesYes287
22R:R:D134 R:R:Q131 64.31327.83YesNo083
23R:R:D128 R:R:Q131 65.12122.61NoNo053
24R:R:F57 R:R:I112 19.0655.02YesNo078
25R:R:D134 R:R:R115 24.84035.96YesYes288
26R:R:N60 R:R:S138 11.40445.96NoNo295
27R:R:I112 R:R:R116 17.91843.76NoNo089
28R:R:D288 R:R:D65 12.65496.65NoYes099
29R:R:C149 R:R:I145 10.93111.64NoNo078
30L:L:?1 R:R:I145 12.34323.3YesNo008
31L:L:?1 R:R:R156 14.944211.22YesYes105
32L:L:?1 R:R:Y103 10.16168.12YesNo007
33L:L:?1 R:R:Y246 13.22823.61YesYes106
34R:R:D288 R:R:N284 11.42365.39NoNo099
35R:R:K207 R:R:M121 14.72492.88YesNo047
36R:R:M121 R:R:Y122 17.0728.38NoYes077
37R:R:W118 R:R:Y122 20.53485.79NoYes057
38R:R:F126 R:R:W118 21.67377.02NoNo055
39R:R:F126 R:R:R115 22.33943.21NoYes258
40L:L:?1 R:R:F254 13.39364.69YesYes004
41R:R:L172 R:R:R156 12.49716.07NoYes045
42R:R:L172 R:R:P173 11.09273.28NoNo045
43R:R:I261 R:R:V256 12.18553.07NoYes012
44R:R:L271 R:R:V256 18.6882.98NoYes032
45R:R:F194 R:R:H247 15.155820.36NoYes088
46L:L:?1 R:R:H274 11.75075.94YesYes105
47R:R:R18 R:R:Y22 13.90924.12YesYes146
48R:R:F169 R:R:W84 13.32824.01YesYes148
Download PSN data

2D representation of the global metapath, ligand(s) interactions and
histograms of path distribution according to several parameters
(click on the image to enlarge it 🔍):

A 2D representation of the global communication in the network.

ConSurf Conservation Grade (See documentation): 

 n/a   1    2    3    4    5    6    7    8    9  

Number of shortest communication paths as a function of the average residue correlation.

Number of shortest communication paths as a function of the average interaction strength of their links.

Number of shortest communication paths as a function of the % of hub nodes in each path.

Number of shortest communication paths as a function of the number of nodes in each path.

Number of shortest communication paths as a function of the % of correlated nodes in each path.


2D representation of the interactions of this orthosteric/allosteric ligand.


Links and nodes colored according to ConSurf Conservation Grade (See documentation): 

 n/a   1    2    3    4    5    6    7    8    9  

Node1 Node2 LinkStrength Comm IsNode1Hub? IsNode2Hub? Node1Cons Node2Cons Node1Shell Node2Shell
R:R:R18 R:R:Y22 4.12 1 Yes Yes 4 6 2 1
R:R:R18 R:R:V170 2.62 1 Yes Yes 4 5 2 1
R:R:R18 R:R:S275 2.64 1 Yes No 4 4 2 2
R:R:Y19 R:R:Y79 8.94 1 Yes Yes 5 5 2 1
R:R:V170 R:R:Y19 3.79 1 Yes Yes 5 5 1 2
R:R:D171 R:R:Y19 4.6 1 No Yes 4 5 2 2
R:R:Y22 R:R:Y26 3.97 1 Yes Yes 6 8 1 1
R:R:Y22 R:R:Y79 9.93 1 Yes Yes 6 5 1 1
R:R:S275 R:R:Y22 7.63 1 No Yes 4 6 2 1
R:R:C279 R:R:Y22 2.69 0 No Yes 5 6 2 1
L:L:?1 R:R:Y22 3.61 1 Yes Yes 0 6 0 1
R:R:L72 R:R:Y26 7.03 0 No Yes 8 8 2 1
R:R:R75 R:R:Y26 4.12 1 Yes Yes 6 8 1 1
R:R:K98 R:R:Y26 3.58 1 Yes Yes 6 8 2 1
L:L:?1 R:R:Y26 2.71 1 Yes Yes 0 8 0 1
R:R:R75 R:R:S71 2.64 1 Yes No 6 7 1 2
R:R:K98 R:R:R75 9.9 1 Yes Yes 6 6 2 1
R:R:F169 R:R:R75 13.9 1 Yes Yes 4 6 2 1
L:L:?1 R:R:R75 8.41 1 Yes Yes 0 6 0 1
R:R:F169 R:R:Y79 3.09 1 Yes Yes 4 5 2 1
R:R:V170 R:R:Y79 7.57 1 Yes Yes 5 5 1 1
L:L:?1 R:R:Y79 5.41 1 Yes Yes 0 5 0 1
R:R:F95 R:R:Y99 3.09 1 No No 5 4 1 1
R:R:F95 R:R:R156 7.48 1 No Yes 5 5 1 1
L:L:?1 R:R:F95 8.44 1 Yes No 0 5 0 1
R:R:F152 R:R:Y99 11.35 1 No No 3 4 1 1
L:L:?1 R:R:Y99 11.73 1 Yes No 0 4 0 1
R:R:H247 R:R:Y103 6.53 0 Yes No 8 7 2 1
L:L:?1 R:R:Y103 8.12 1 Yes No 0 7 0 1
L:L:?1 R:R:I145 3.3 1 Yes No 0 8 0 1
L:L:?1 R:R:F152 9.37 1 Yes No 0 3 0 1
R:R:L172 R:R:R156 6.07 0 No Yes 4 5 2 1
R:R:R156 R:R:T174 3.88 1 Yes No 5 3 1 2
R:R:K257 R:R:R156 7.43 1 Yes Yes 5 5 1 1
L:L:?1 R:R:R156 11.22 1 Yes Yes 0 5 0 1
R:R:D171 R:R:V170 4.38 1 No Yes 4 5 2 1
L:L:?1 R:R:V170 3.44 1 Yes Yes 0 5 0 1
R:R:F254 R:R:T174 2.59 0 Yes No 4 3 1 2
R:R:K257 R:R:T174 3 1 Yes No 5 3 1 2
R:R:F254 R:R:M186 7.46 0 Yes No 4 4 1 2
R:R:E190 R:R:H247 6.15 0 No Yes 5 8 2 2
R:R:E190 R:R:F250 5.83 0 No Yes 5 5 2 1
R:R:H247 R:R:Y246 7.62 0 Yes Yes 8 6 2 1
R:R:F250 R:R:Y246 6.19 1 Yes Yes 5 6 1 1
R:R:H274 R:R:Y246 7.62 1 Yes Yes 5 6 1 1
R:R:L278 R:R:Y246 4.69 0 No Yes 5 6 2 1
L:L:?1 R:R:Y246 3.61 1 Yes Yes 0 6 0 1
R:R:H274 R:R:S249 6.97 1 Yes No 5 4 1 2
R:R:F250 R:R:P251 4.33 1 Yes No 5 6 1 2
L:L:?1 R:R:F250 5.62 1 Yes Yes 0 5 0 1
R:R:D253 R:R:K257 5.53 0 No Yes 4 5 2 1
R:R:D253 R:R:H274 22.69 0 No Yes 4 5 2 1
L:L:?1 R:R:F254 4.69 1 Yes Yes 0 4 0 1
L:L:?1 R:R:K257 8.68 1 Yes Yes 0 5 0 1
L:L:?1 R:R:H274 5.94 1 Yes Yes 0 5 0 1
R:R:F254 R:R:L155 2.44 0 Yes No 4 4 1 2
R:R:I76 R:R:Y26 2.42 0 No Yes 7 8 2 1
R:R:C149 R:R:I145 1.64 0 No No 7 8 2 1
R:R:I188 R:R:I192 1.47 0 No No 4 4 2 1
R:R:A281 R:R:Y246 1.33 0 No Yes 8 6 2 1
L:L:?1 R:R:G189 1.32 1 Yes No 0 5 0 1
L:L:?1 R:R:G193 1.32 1 Yes No 0 5 0 1
L:L:?1 R:R:I192 1.1 1 Yes No 0 4 0 1

Location and physicochemical properties of the interaction partners of this ligand

Interactions of this ligand

Similarities between the interactions of this ligand and those of other networks

PDB Summary
PDB 7XV3_nogp
Class
SubFamily
Type
SubType
Species
Ligand
Other Ligand(s)
Protein Partners
PDB Resolution
Date
D.O.I.
Net Summary
Imin 2.52
Number of Linked Nodes 267
Number of Links 293
Number of Hubs 39
Number of Links mediated by Hubs 149
Number of Communities 5
Number of Nodes involved in Communities 46
Number of Links involved in Communities 74
Path Summary
Number Of Nodes in MetaPath 49
Number Of Links MetaPath 48
Number of Shortest Paths 43963
Length Of Smallest Path 3
Average Path Length 14.8608
Length of Longest Path 34
Minimum Path Strength 1.235
Average Path Strength 5.01363
Maximum Path Strength 15.22
Minimum Path Correlation 0.7
Average Path Correlation 0.923131
Maximum Path Correlation 0.99
Minimum % Of Corr. Nodes 4
Average % Of Corr. Nodes 47.1732
Maximum % Of Corr. Nodes 100
Minimum Path Hubs % 0
Average Path Hubs % 50.6986
Maximum Path Hubs % 100
AnnotationTypeLinks
Gene OntologyMolecular Function• protein binding   • binding   • enzyme binding   • GTPase binding   • protein-containing complex binding   • pyrophosphatase activity   • GTPase activity   • ribonucleoside triphosphate phosphatase activity   • hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides   • hydrolase activity   • hydrolase activity, acting on acid anhydrides   • catalytic activity   • signaling receptor complex adaptor activity   • protein-macromolecule adaptor activity   • molecular adaptor activity   • signaling adaptor activity   • multicellular organismal process   • system process   • sensory perception of chemical stimulus   • sensory perception   • nervous system process   • sensory perception of taste   • developmental process   • sensory organ development   • eye development   • animal organ development   • retina development in camera-type eye   • visual system development   • multicellular organism development   • camera-type eye development
Gene OntologyBiological Process• multicellular organismal process   • system process   • sensory perception of chemical stimulus   • sensory perception   • nervous system process   • sensory perception of taste   • developmental process   • sensory organ development   • eye development   • animal organ development   • retina development in camera-type eye   • visual system development   • multicellular organism development   • camera-type eye development   • anatomical structure development   • sensory system development   • system development   • cell population proliferation   • cellular process   • cellular response to stimulus   • regulation of biological process   • regulation of cellular process   • response to stimulus   • signaling   • biological regulation   • signal transduction   • cell communication   • response to ketone   • response to prostaglandin   • response to lipid   • response to endogenous stimulus   • response to alcohol   • cellular response to prostaglandin stimulus   • response to oxygen-containing compound   • cellular response to oxygen-containing compound   • cellular response to endogenous stimulus   • cellular response to prostaglandin E stimulus   • cellular response to chemical stimulus   • cellular response to alcohol   • response to hormone   • response to chemical   • cellular response to lipid   • response to prostaglandin E   • cellular response to ketone   • cellular response to hormone stimulus   • small GTPase-mediated signal transduction   • Ras protein signal transduction   • intracellular signal transduction   • intracellular signaling cassette   • phospholipase C-activating G protein-coupled receptor signaling pathway   • G protein-coupled receptor signaling pathway   • cellular response to nitrogen compound   • response to dopamine   • cellular response to dopamine   • response to monoamine   • response to catecholamine   • adenylate cyclase-activating dopamine receptor signaling pathway   • cellular response to catecholamine stimulus   • G protein-coupled dopamine receptor signaling pathway   • response to nitrogen compound   • adenylate cyclase-activating G protein-coupled receptor signaling pathway   • cellular response to monoamine stimulus   • adenylate cyclase-modulating G protein-coupled receptor signaling pathway   • synaptic signaling   • cellular response to acetylcholine   • cell-cell signaling   • acetylcholine receptor signaling pathway   • postsynaptic signal transduction   • G protein-coupled acetylcholine receptor signaling pathway   • response to acetylcholine   • cellular anatomical structure   • membrane   • protein-containing complex   • extrinsic component of plasma membrane   • catalytic complex   • plasma membrane protein complex   • cytoplasmic side of membrane   • plasma membrane   • membrane protein complex   • heterotrimeric G-protein complex   • side of membrane   • cell periphery   • cytoplasmic side of plasma membrane   • GTPase complex
Gene OntologyCellular Component• cellular anatomical structure   • membrane   • protein-containing complex   • extrinsic component of plasma membrane   • catalytic complex   • plasma membrane protein complex   • cytoplasmic side of membrane   • plasma membrane   • membrane protein complex   • heterotrimeric G-protein complex   • side of membrane   • cell periphery   • cytoplasmic side of plasma membrane   • GTPase complex   • extrinsic component of membrane   • extrinsic component of cytoplasmic side of plasma membrane   • extracellular exosome   • membrane-bounded organelle   • extracellular vesicle   • extracellular organelle   • extracellular region   • organelle   • extracellular space   • vesicle   • extracellular membrane-bounded organelle   • non-motile cilium   • 9+0 non-motile cilium   • cilium   • neuron projection   • photoreceptor disc membrane   • photoreceptor outer segment   • plasma membrane bounded cell projection   • cell projection   • photoreceptor cell cilium   • organelle membrane   • intracellular anatomical structure   • cytoplasm   • cytosol   • vacuolar membrane   • lytic vacuole   • vacuole   • intracellular membrane-bounded organelle   • intracellular organelle   • lytic vacuole membrane   • bounding membrane of organelle   • lysosomal membrane   • lysosome   • synapse   • cell junction   • protein binding   • binding   • G-protein beta-subunit binding   • fibroblast proliferation   • cell population proliferation   • cellular process   • cellular response to nitrogen compound   • cellular response to stimulus   • response to dopamine   • regulation of cellular process   • response to stimulus   • signaling   • cellular response to dopamine   • response to monoamine   • cell communication   • response to catecholamine   • adenylate cyclase-activating dopamine receptor signaling pathway   • cellular response to catecholamine stimulus   • signal transduction   • regulation of biological process   • G protein-coupled dopamine receptor signaling pathway   • biological regulation   • response to oxygen-containing compound   • response to nitrogen compound   • adenylate cyclase-activating G protein-coupled receptor signaling pathway   • cellular response to oxygen-containing compound   • cellular response to chemical stimulus   • cellular response to monoamine stimulus   • response to chemical   • adenylate cyclase-modulating G protein-coupled receptor signaling pathway   • G protein-coupled receptor signaling pathway   • response to ketone   • response to prostaglandin   • response to lipid   • response to endogenous stimulus   • response to alcohol   • cellular response to prostaglandin stimulus   • cellular response to endogenous stimulus   • cellular response to prostaglandin E stimulus   • cellular response to alcohol   • response to hormone   • cellular response to lipid   • response to prostaglandin E   • cellular response to ketone   • cellular response to hormone stimulus   • molecular transducer activity   • G protein-coupled receptor activity   • transmembrane signaling receptor activity   • signaling receptor activity   • bioactive lipid receptor activity   • multicellular organismal process   • multicellular organismal-level homeostasis   • leukocyte homeostasis   • T cell homeostasis   • homeostatic process   • immune system process   • homeostasis of number of cells   • lymphocyte homeostasis   • negative regulation of biological process   • negative regulation of interleukin-2 production   • regulation of cytokine production   • cytokine production   • negative regulation of cellular process   • regulation of multicellular organismal process   • negative regulation of macromolecule metabolic process   • regulation of biosynthetic process   • regulation of interleukin-2 production   • negative regulation of metabolic process   • interleukin-2 production   • negative regulation of cytokine production   • regulation of macromolecule metabolic process   • gene expression   • macromolecule biosynthetic process   • regulation of gene expression   • negative regulation of gene expression   • biosynthetic process   • negative regulation of biosynthetic process   • negative regulation of macromolecule biosynthetic process   • regulation of macromolecule biosynthetic process   • metabolic process   • macromolecule metabolic process   • negative regulation of multicellular organismal process   • regulation of metabolic process   • intracellular membraneless organelle   • centrosome   • microtubule organizing center   • cytoskeleton   • centriolar satellite   • membraneless organelle   • microtubule cytoskeleton
SCOP2Domain Identifier• Transducin (heterotrimeric G protein), gamma chain
SCOP2Family Identifier• Transducin (heterotrimeric G protein), gamma chain
Membrane Protein Annotations-• Orientations of Proteins in Membranes database (OPM)   • Protein Data Bank of Transmembrane Proteins (PDBTM)   • MemProtMD


Details about the values in these tables can be found in the corresponding documentation page .
CodeWJS
PDB ResiduesL:L:?1
Environment DetailsOpen EMBL-EBI Page
CodeWJS
Name(2~{S})-2-$l^{4}-azanyl-3-[[(2~{R})-3-octadecanoyloxy-2-oxidanyl-propoxy]-oxidanyl-oxidanylidene-$l^{6}-phosphanyl]oxy-propanoic acid
Synonyms
Identifier
FormulaC24 H20 N O9 P
Molecular Weight497.391
SMILES
PubChem
Formal Charge0
Total Atoms55
Total Chiral Atoms2
Total Bonds54
Total Aromatic Bonds0

PDBsumOpen PDBsum Page
ChainR
ProteinReceptor
UniProtQ9BXC1
Sequence
>7XV3_nogp_Chain_R
TDFRYFIYA VTYTVILVP GLIGNILAL WVFYGYMKE TKRAVIFMI 
NLAIADLLQ VLSLPLRIF YYLNHDWPF GPGLCMFCF YLKYVNMYA 
SIYFLVCIS VRRFWFLMY PFRFHDCKQ KYDLYISIA GWLIICLAC 
VLFPLLRTS DDTSGNRTK CFVDLPTRN VNLAQSVVM MTIGELIGF 
VTPLLIVLY CTWKTVLSL QDKYPMAQD LGEKQKALK MILTCAGVF 
LICFAPYHF SFPLDFLVK SNEIKSCLA RRVILIFHS VALCLASLN 
SCLDPVIYY FSTNEFRRR L


Click on each residue to open a popup with some information about it.

ConSurf Conservation Grade (See documentation): 

 n/a   1    2    3    4    5    6    7    8    9  




This receptor, from the same or other species and bound to the same or other ligands, is also present in the following networks:
Show PDB Class SubFamily Type SubType Species Orthosteric Ligand Other Ligand(s) Protein Partners Resolution Date DOI
7XV3AOrphanOrphanGPR174Homo sapiensLysophosphatidylserine-chim(NtGi1-Gs)/β1/γ22.762023-02-15doi.org/10.1038/s41467-023-36575-0
7XV3 (No Gprot) AOrphanOrphanGPR174Homo sapiensLysophosphatidylserine-2.762023-02-15doi.org/10.1038/s41467-023-36575-0
8KH5AOrphanOrphanGPR174Homo sapiensLysophosphatidylserine-Gs/β1/γ22.832023-10-11doi.org/10.1038/s41467-023-41654-3
8KH5 (No Gprot) AOrphanOrphanGPR174Homo sapiensLysophosphatidylserine-2.832023-10-11doi.org/10.1038/s41467-023-41654-3
8IZBAOrphanOrphanGPR174Homo sapiensLysophosphatidylserine-Gs/β1/γ23.062023-11-01doi.org/10.1371/journal.pbio.3002387
8IZB (No Gprot) AOrphanOrphanGPR174Homo sapiensLysophosphatidylserine-3.062023-11-01doi.org/10.1371/journal.pbio.3002387




You can download a compressed (zip) file with structure(s), 3D outputs (as PyMol and VMD scripts) and numerical data files (as csv and plain text files).

Download 7XV3_nogp.zip



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