Color ConSurf Grade
      No Conservation data available
      1
      2
      3
      4
      5
      6
      7
      8
      9

Index: hub id, click on each number to highlight the corresponding hub in the 3D visualization.

Hub: the hub being considered.

Avg Int. Strength: the average interaction strength of all the links of the corresponding hub.

Num Of Links: the number of links of the corresponding hub.

Community: the id of the community the link belong to, otherwise 0.

ConSurf: this column reports the ConSurf conservation grades of each hub.

Index Hub Avg Int. Strength Num Of Links Community ConSurf
1L:L:?1 12.3314710
2R:R:F11 5.4425419
3R:R:I16 4.18456
4R:R:P17 4.0975407
5R:R:Y34 7.632539
6R:R:N41 5.795409
7R:R:I47 3.845445
8R:R:Y59 5.545649
9R:R:F61 5.6508
10R:R:I68 4.305405
11R:R:D69 6.78429
12R:R:S73 4.745437
13R:R:M77 6.585435
14R:R:F84 7.31554
15R:R:W85 6.876535
16R:R:I91 3.36519
17R:R:F101 5.302505
18R:R:H104 8.75414
19R:R:E110 6.3225428
20R:R:R121 5.8075429
21R:R:Y122 7.6825407
22R:R:L135 4.64469
23R:R:F155 4.39615
24R:R:L158 7.02667614
25R:R:L165 4.1025417
26R:R:F167 6.045417
27R:R:H175 8.398518
28R:R:Y177 8.785405
29R:R:V179 5.654518
30R:R:H180 10.1117616
31R:R:Q181 8.74167614
32R:R:D182 6.67416
33R:R:N194 5.355416
34R:R:V205 6.325414
35R:R:M206 5.128513
36R:R:D209 8.035417
37R:R:V210 5.345404
38R:R:I220 3.8875409
39R:R:H243 6.10667629
40R:R:F250 7.75406
41R:R:Y251 9.364516
42R:R:L254 7.03403
43R:R:L257 5.065415
44R:R:H261 8.51833617
45R:R:R262 7.09614
46R:R:R272 7.465416
47R:R:L280 8.6675407
48R:R:N287 6.4675429
49R:R:I290 7.478529
50R:R:Y291 8.185429
51R:R:K294 3.5875429
52R:R:I298 5.0275407
53R:R:R301 5.86833647
   

Color ConSurf Grade
      No Conservation data available
      1
      2
      3
      4
      5
      6
      7
      8
      9

Index: link id, click on each number to highlight the corresponding link in the 3D visualization.

Node1 Node2: the two nodes of the corresponding link.

Recurrence: the relative Recurrence in the pool of shortest paths.

Int. Strength: the interaction strength between the two nodes.

Hub1?, Hub2?: "Yes" if the corresponding node has more than 3 links, otherwise "No".

Community: the id of the community the link belong to, otherwise 0.

ConSurf1, ConSurf2: these columns report the ConSurf conservation grades of the two nodes involved in a link.

Index Node1 Node2 Recurrence Int. Strength Hub1? Hub2? Community ConSurf1 ConSurf2
1R:R:H104 R:R:V179 12.45025.54YesYes148
2R:R:V179 R:R:Y177 22.12173.79YesYes085
3R:R:Q99 R:R:Y177 58.4123.38NoYes095
4R:R:C178 R:R:Q99 57.50416.1NoNo099
5R:R:C178 R:R:I91 51.62273.27NoYes199
6R:R:I91 R:R:L13 50.06654.28YesNo098
7R:R:L13 R:R:L83 48.86364.15NoNo086
8R:R:L83 R:R:R89 26.30092.43NoNo065
9R:R:R89 R:R:V12 22.30335.23NoNo057
10R:R:N171 R:R:V12 18.24732.96NoNo067
11R:R:H8 R:R:N171 16.882312.75NoNo036
12R:R:F6 R:R:H8 15.51086.79NoNo033
13L:L:?1 R:R:Q181 10.686414.32YesYes104
14R:R:H180 R:R:N194 12.56048.93YesYes166
15R:R:L165 R:R:N194 12.27184.12YesYes176
16R:R:F84 R:R:L83 23.44454.87YesNo046
17R:R:F84 R:R:I16 13.83466.28YesYes546
18R:R:I16 R:R:P17 12.68363.39YesYes067
19R:R:L280 R:R:Y177 72.985810.55YesYes075
20R:R:L280 R:R:T76 34.12125.9YesNo076
21R:R:M77 R:R:T76 32.8343.01YesNo056
22R:R:M77 R:R:Y34 20.617314.37YesYes359
23R:R:L81 R:R:Y34 15.43624.69NoYes389
24R:R:L81 R:R:W85 12.66093.42NoYes385
25L:L:?1 R:R:I202 18.762810.24YesNo004
26R:R:I202 R:R:M206 23.05554.37NoYes043
27R:R:L254 R:R:M206 32.749.9YesYes033
28R:R:F250 R:R:L254 72.46383.65YesYes063
29R:R:E110 R:R:F250 69.048.16YesYes086
30R:R:E110 R:R:N287 96.40443.94YesYes289
31R:R:N287 R:R:Y291 1006.98YesYes299
32R:R:H243 R:R:Y291 92.05656.53YesYes299
33R:R:H243 R:R:R121 83.753.39YesYes299
34R:R:M117 R:R:R121 73.22242.48NoYes099
35R:R:L62 R:R:M117 50.97432.83NoNo089
36R:R:L62 R:R:Y59 49.97892.34NoYes089
37R:R:L54 R:R:Y59 20.834511.72NoYes499
38R:R:L54 R:R:R301 19.56364.86NoYes497
39R:R:I47 R:R:R301 21.23985.01YesYes457
40R:R:Q297 R:R:Y59 20.82815.64NoYes469
41R:R:Q297 R:R:R301 19.73547.01NoYes467
42R:R:I298 R:R:I47 10.67025.89YesYes075
43R:R:E51 R:R:R301 10.657210.47NoYes077
44R:R:F61 R:R:M117 26.52143.73YesNo089
45R:R:F155 R:R:L158 20.39688.53YesYes154
46R:R:E110 R:R:I68 37.07814.1YesYes085
47R:R:L280 R:R:L72 38.66034.15YesNo074
48R:R:L106 R:R:L72 38.42694.15NoNo044
49R:R:L254 R:R:Y279 45.660311.72YesNo037
50R:R:M206 R:R:S111 11.39324.6YesNo135
51R:R:I213 R:R:Y251 14.83323.63NoYes086
52R:R:A118 R:R:I213 12.85224.87NoNo088
53R:R:A118 R:R:S216 12.25243.42NoNo089
54R:R:I220 R:R:R121 23.28245.01YesYes099
55R:R:S216 R:R:Y122 11.72713.82NoYes097
56L:L:?1 R:R:R262 14.79111.62YesYes104
57R:R:F263 R:R:R262 11.69477.48NoYes054
58R:R:F263 R:R:V259 10.25525.24NoNo054
59R:R:F155 R:R:M206 18.14673.73YesYes153
60R:R:I68 R:R:L106 38.21944.28YesNo054
61R:R:L280 R:R:Y279 45.044314.07YesNo077
62R:R:H175 R:R:Y177 13.662717.42YesYes085
63R:R:F250 R:R:Y251 12.187513.41YesYes066
Download PSN data

2D representation of the global metapath, ligand(s) interactions and
histograms of path distribution according to several parameters
(click on the image to enlarge it 🔍):

A 2D representation of the global communication in the network.

ConSurf Conservation Grade (See documentation): 

 n/a   1    2    3    4    5    6    7    8    9  

Number of shortest communication paths as a function of the average residue correlation.

Number of shortest communication paths as a function of the average interaction strength of their links.

Number of shortest communication paths as a function of the % of hub nodes in each path.

Number of shortest communication paths as a function of the number of nodes in each path.

Number of shortest communication paths as a function of the % of correlated nodes in each path.


2D representation of the interactions of this orthosteric/allosteric ligand.


Links and nodes colored according to ConSurf Conservation Grade (See documentation): 

 n/a   1    2    3    4    5    6    7    8    9  

Node1 Node2 LinkStrength Comm IsNode1Hub? IsNode2Hub? Node1Cons Node2Cons Node1Shell Node2Shell
L:L:?1 R:R:H104 16.9 1 Yes Yes 0 4 0 1
L:L:?1 R:R:L158 6.62 1 Yes Yes 0 4 0 1
L:L:?1 R:R:H180 18.44 1 Yes Yes 0 6 0 1
L:L:?1 R:R:Q181 14.32 1 Yes Yes 0 4 0 1
L:L:?1 R:R:G198 8.18 1 Yes No 0 4 0 1
L:L:?1 R:R:I202 10.24 1 Yes No 0 4 0 1
L:L:?1 R:R:R262 11.62 1 Yes Yes 0 4 0 1
R:R:I162 R:R:M100 5.83 1 No No 4 4 2 2
R:R:H180 R:R:M100 5.25 1 Yes No 6 4 1 2
R:R:H104 R:R:L158 5.14 1 Yes Yes 4 4 1 1
R:R:H104 R:R:V179 5.54 1 Yes Yes 4 8 1 2
R:R:H104 R:R:Q181 7.42 1 Yes Yes 4 4 1 1
R:R:F155 R:R:L158 8.53 1 Yes Yes 5 4 2 1
R:R:F155 R:R:M206 3.73 1 Yes Yes 5 3 2 2
R:R:H180 R:R:L158 16.71 1 Yes Yes 6 4 1 1
R:R:L158 R:R:Y197 3.52 1 Yes No 4 4 1 2
R:R:H180 R:R:I162 7.95 1 Yes No 6 4 1 2
R:R:I162 R:R:N194 4.25 1 No Yes 4 6 2 2
R:R:Q181 R:R:V179 10.03 1 Yes Yes 4 8 1 2
R:R:H180 R:R:N194 8.93 1 Yes Yes 6 6 1 2
R:R:H180 R:R:R262 3.39 1 Yes Yes 6 4 1 1
R:R:L257 R:R:Q181 3.99 1 Yes Yes 5 4 2 1
R:R:Q181 R:R:S258 4.33 1 Yes No 4 7 1 2
R:R:H261 R:R:Q181 12.36 1 Yes Yes 7 4 2 1
R:R:M184 R:R:V195 3.04 1 No No 4 5 2 2
R:R:M184 R:R:R262 7.44 1 No Yes 4 4 2 1
R:R:R262 R:R:V195 6.54 1 Yes No 4 5 1 2
R:R:L199 R:R:R262 6.07 0 No Yes 4 4 2 1
R:R:I202 R:R:M206 4.37 0 No Yes 4 3 1 2
R:R:I202 R:R:S258 9.29 0 No No 4 7 1 2
R:R:H261 R:R:L257 5.14 1 Yes Yes 7 5 2 2
R:R:F263 R:R:R262 7.48 0 No Yes 5 4 2 1
R:R:L158 R:R:P159 1.64 1 Yes No 4 4 1 2

Location and physicochemical properties of the interaction partners of this ligand

Interactions of this ligand

Similarities between the interactions of this ligand and those of other networks

PDB Summary
PDB 8F76_nogp
Class
SubFamily
Type
SubType
Species
Ligand
Other Ligand(s)
Protein Partners
PDB Resolution
Date
D.O.I.
Net Summary
Imin 3.01
Number of Linked Nodes 281
Number of Links 328
Number of Hubs 53
Number of Links mediated by Hubs 186
Number of Communities 6
Number of Nodes involved in Communities 64
Number of Links involved in Communities 92
Path Summary
Number Of Nodes in MetaPath 64
Number Of Links MetaPath 63
Number of Shortest Paths 64658
Length Of Smallest Path 3
Average Path Length 14.646
Length of Longest Path 33
Minimum Path Strength 1.41
Average Path Strength 5.95317
Maximum Path Strength 17.67
Minimum Path Correlation 0.7
Average Path Correlation 0.914039
Maximum Path Correlation 0.99
Minimum % Of Corr. Nodes 4.16667
Average % Of Corr. Nodes 41.7618
Maximum % Of Corr. Nodes 100
Minimum Path Hubs % 0
Average Path Hubs % 53.7932
Maximum Path Hubs % 100
AnnotationTypeLinks
Gene OntologyMolecular Function
Gene OntologyBiological Process
Gene OntologyCellular Component
SCOP2Domain Identifier• Transducin (heterotrimeric G protein), gamma chain
SCOP2Family Identifier• Transducin (heterotrimeric G protein), gamma chain
Membrane Protein Annotations-• Orientations of Proteins in Membranes database (OPM)   • Protein Data Bank of Transmembrane Proteins (PDBTM)   • MemProtMD


Details about the values in these tables can be found in the corresponding documentation page .
CodePPI
PDB ResiduesL:L:?1
Environment DetailsOpen EMBL-EBI Page
CodePPI
NamePropanoic acid
Synonyms
  • Propionic acid
  • Sodium propionate
  • Propanoic acid
Identifier
FormulaC3 H6 O2
Molecular Weight74.079
SMILES
PubChem1032
Formal Charge0
Total Atoms11
Total Chiral Atoms0
Total Bonds10
Total Aromatic Bonds0

PDBsumOpen PDBsum Page
ChainR
ProteinReceptor
UniProtQ9H255
Sequence
>8F76_nogp_Chain_R
CNFTHATFV LIGIPGLEK AHFWVGFPL LSMYVVAMF GNCIVVFIV 
RTERSLHAP MYLFLCMLA AIDLALSTS TMPKILALF WFDSREISF 
EACLTQMFF IHALSAIES TILLAMAFD RYVAICHPL RHAAVLNNT 
VTAQIGIVA VVRGSLFFF PLPLLIKRL AFCHSNVLS HSYCVHQDV 
MKLAYADTL PNVVYGLTA ILLVMGVDV MFISLSYFL IIRTVLQLP 
SKSERAKAF GTCVSHIGV VLAFYVPLI GLSVVHRFG NSLHPIVRV 
VMGDIYLLL PPVINPIIY GAKTKQIRT RVLAM


Click on each residue to open a popup with some information about it.

ConSurf Conservation Grade (See documentation): 

 n/a   1    2    3    4    5    6    7    8    9  




This receptor, from the same or other species and bound to the same or other ligands, is also present in the following networks:
Show PDB Class SubFamily Type SubType Species Orthosteric Ligand Other Ligand(s) Protein Partners Resolution Date DOI
8F76O1Odorant receptorsOdorant family 51OR51E2Homo sapiensPropanoic acid-Gs/β1/γ23.12023-03-22doi.org/10.1038/s41586-023-05798-y
8F76 (No Gprot) O1Odorant receptorsOdorant family 51OR51E2Homo sapiensPropanoic acid-3.12023-03-22doi.org/10.1038/s41586-023-05798-y




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Download 8F76_nogp.zip



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