Color ConSurf Grade
      No Conservation data available
      1
      2
      3
      4
      5
      6
      7
      8
      9

Index: hub id, click on each number to highlight the corresponding hub in the 3D visualization.

Hub: the hub being considered.

Avg Int. Strength: the average interaction strength of all the links of the corresponding hub.

Num Of Links: the number of links of the corresponding hub.

Community: the id of the community the link belong to, otherwise 0.

ConSurf: this column reports the ConSurf conservation grades of each hub.

Index Hub Avg Int. Strength Num Of Links Community ConSurf
1L:L:?1 12.2178910
2R:R:W15 6.27402
3R:R:L37 6.405407
4R:R:F45 6.286526
5R:R:E54 12.5025426
6R:R:Y58 6.86627
7R:R:L62 5.2675409
8R:R:D66 8.1725409
9R:R:L69 6.08417
10R:R:C89 5.902519
11R:R:Q93 12.95416
12R:R:Y96 8.14516
13R:R:L97 4.42571715
14R:R:N99 6.1975418
15R:R:R100 7.1175417
16R:R:D113 9.6675428
17R:R:Y115 6.8547
18R:R:R119 6.37333646
19R:R:H120 5.3825446
20R:R:R128 8.326527
21R:R:R151 7.6625414
22R:R:F163 16.762514
23R:R:R164 7.685415
24R:R:R167 8.55403
25R:R:M173 5.7575414
26R:R:F180 10.706538
27R:R:L198 3.7275458
28R:R:F226 6.094539
29R:R:L231 3.5275405
30R:R:H234 10.7975409
31R:R:L237 5.195416
32R:R:R240 4.75833615
33R:R:R255 14.18414
34R:R:Y259 7.008504
35R:R:K263 5.5425404
36R:R:D266 7.3175417
37R:R:Y276 8.31333629
38R:R:Y277 6.194527
39R:R:F283 6.7175408
   

Color ConSurf Grade
      No Conservation data available
      1
      2
      3
      4
      5
      6
      7
      8
      9

Index: link id, click on each number to highlight the corresponding link in the 3D visualization.

Node1 Node2: the two nodes of the corresponding link.

Recurrence: the relative Recurrence in the pool of shortest paths.

Int. Strength: the interaction strength between the two nodes.

Hub1?, Hub2?: "Yes" if the corresponding node has more than 3 links, otherwise "No".

Community: the id of the community the link belong to, otherwise 0.

ConSurf1, ConSurf2: these columns report the ConSurf conservation grades of the two nodes involved in a link.

Index Node1 Node2 Recurrence Int. Strength Hub1? Hub2? Community ConSurf1 ConSurf2
1L:L:?1 R:R:R164 11.97178YesYes105
2L:L:?1 R:R:F163 33.421541.88YesYes104
3L:L:?1 R:R:L237 38.02565.06YesYes106
4L:L:?1 R:R:R240 16.78093.55YesYes105
5L:L:?1 R:R:Y259 31.01429.43YesYes004
6L:L:?1 R:R:S262 18.87527.69YesNo006
7R:R:H168 R:R:R240 22.77229.03NoYes135
8R:R:H168 R:R:S165 32.21785.58NoNo034
9R:R:G160 R:R:S165 30.29633.71NoNo034
10R:R:G159 R:R:G160 26.0972.11NoNo033
11R:R:G159 R:R:R167 23.98123NoYes033
12R:R:W15 R:R:Y259 13.29958.68YesYes024
13R:R:K263 R:R:S262 10.96244.59YesNo046
14R:R:D266 R:R:S262 21.22314.42YesNo076
15R:R:F163 R:R:Y96 19.66864.13YesYes146
16R:R:L69 R:R:Y96 30.13447.03YesYes176
17R:R:C269 R:R:L69 43.06156.35NoYes087
18R:R:C269 R:R:D66 37.313110.89NoYes089
19R:R:D66 R:R:L62 36.68168.14YesYes099
20R:R:L62 R:R:Y277 25.11475.86YesYes097
21R:R:F45 R:R:Y277 19.77116.19YesYes267
22R:R:F45 R:R:V44 26.5723.93YesNo066
23R:R:F283 R:R:V44 21.03425.24YesNo086
24R:R:F283 R:R:Y278 15.399116.5YesNo087
25R:R:L37 R:R:Y278 11.583110.55YesNo077
26R:R:D266 R:R:L69 19.85214.07YesYes177
27R:R:H234 R:R:L237 67.2376.43YesYes096
28R:R:F180 R:R:H234 10024.89YesYes089
29R:R:F180 R:R:F226 69.9526.43YesYes389
30R:R:F226 R:R:V107 53.55437.87YesNo098
31R:R:V107 R:R:Y276 52.73925.05NoYes089
32R:R:M59 R:R:Y276 25.29823.59NoYes289
33R:R:F45 R:R:M59 20.92626.22YesNo268
34R:R:I110 R:R:Y276 39.61253.63NoYes289
35R:R:I110 R:R:Y58 38.4254.84NoYes287
36R:R:D113 R:R:Y58 13.28874.6YesYes287
37R:R:V136 R:R:Y58 11.89627.57NoYes067
38R:R:F163 R:R:L97 18.3034.87YesYes145
39R:R:L97 R:R:R151 16.48414.86YesYes154
40R:R:F175 R:R:R151 20.87227.48NoYes054
41R:R:F175 R:R:S147 17.28833.96NoNo054
42R:R:S147 R:R:V144 15.40993.23NoNo047
43R:R:M102 R:R:V144 13.52084.56NoNo057
44R:R:D272 R:R:L62 15.32364.07NoYes099
45R:R:D272 R:R:Y276 12.6418.05NoYes099
46R:R:F226 R:R:F230 16.87277.5YesNo399
47R:R:F230 R:R:N268 16.17115.71NoNo099
48R:R:D272 R:R:N268 10.741113.46NoNo099
49R:R:L69 R:R:N99 10.22296.87YesYes178
50R:R:F163 R:R:Q93 28.44529.28YesYes146
51R:R:C89 R:R:Q93 12.39817.63YesYes196
52R:R:L97 R:R:Y101 23.5443.52YesNo057
53R:R:H234 R:R:Y101 30.92785.44YesNo097
54R:R:F180 R:R:L231 62.10944.87YesYes085
55R:R:L231 R:R:V227 56.64712.98YesNo054
56R:R:L223 R:R:V227 55.25452.98NoNo084
57R:R:L223 R:R:S191 53.851112.01NoNo088
58R:R:S191 R:R:V219 52.4373.23NoNo087
59R:R:V194 R:R:V219 48.11363.21NoNo077
60R:R:V118 R:R:V194 33.99911.22NoNo587
61R:R:A197 R:R:V118 33.34591.7NoNo058
62R:R:A197 R:R:R119 31.7864.15NoYes056
63R:R:R119 R:R:Y115 18.57839.26YesYes467
64R:R:C190 R:R:Y115 15.49094.03NoYes067
65R:R:A111 R:R:C190 12.12283.61NoNo096
66R:R:A111 R:R:V187 10.42265.09NoNo098
67R:R:L237 R:R:M173 15.63125.65YesYes164
68R:R:L198 R:R:V194 12.65722.98YesNo587
69R:R:L198 R:R:T212 10.29857.37YesNo086
70R:R:C229 R:R:N268 19.54449.45NoNo089
71R:R:C229 R:R:L271 16.05763.17NoNo086
72R:R:L271 R:R:V225 14.29815.96NoNo066
73R:R:C275 R:R:V225 12.52771.71NoNo076
74R:R:L237 R:R:R240 17.17493.64YesYes165
75R:R:H168 R:R:M173 11.35643.94NoYes134
76R:R:L97 R:R:Y96 11.21613.52YesYes156
Download PSN data

2D representation of the global metapath, ligand(s) interactions and
histograms of path distribution according to several parameters
(click on the image to enlarge it 🔍):

A 2D representation of the global communication in the network.

ConSurf Conservation Grade (See documentation): 

 n/a   1    2    3    4    5    6    7    8    9  

Number of shortest communication paths as a function of the average residue correlation.

Number of shortest communication paths as a function of the average interaction strength of their links.

Number of shortest communication paths as a function of the % of hub nodes in each path.

Number of shortest communication paths as a function of the number of nodes in each path.

Number of shortest communication paths as a function of the % of correlated nodes in each path.


2D representation of the interactions of this orthosteric/allosteric ligand.


Links and nodes colored according to ConSurf Conservation Grade (See documentation): 

 n/a   1    2    3    4    5    6    7    8    9  

Node1 Node2 LinkStrength Comm IsNode1Hub? IsNode2Hub? Node1Cons Node2Cons Node1Shell Node2Shell
I:I:?1 R:R:R164 4.47 1 No Yes 0 5 2 1
I:I:?1 R:R:R255 15.63 1 No Yes 0 4 2 1
L:L:?1 R:R:L80 15.19 1 Yes No 0 5 0 1
L:L:?1 R:R:F163 41.88 1 Yes Yes 0 4 0 1
L:L:?1 R:R:R164 8 1 Yes Yes 0 5 0 1
L:L:?1 R:R:L237 5.06 1 Yes Yes 0 6 0 1
L:L:?1 R:R:R240 3.55 1 Yes Yes 0 5 0 1
L:L:?1 R:R:R255 15.11 1 Yes Yes 0 4 0 1
L:L:?1 R:R:L258 4.05 1 Yes No 0 5 0 1
L:L:?1 R:R:Y259 9.43 1 Yes Yes 0 4 0 1
L:L:?1 R:R:S262 7.69 1 Yes No 0 6 0 1
R:R:L13 R:R:R255 20.65 0 No Yes 2 4 2 1
R:R:W15 R:R:Y259 8.68 0 Yes Yes 2 4 2 1
R:R:F23 R:R:Y259 6.19 0 No Yes 4 4 2 1
R:R:F163 R:R:L80 3.65 1 Yes No 4 5 1 1
R:R:R164 R:R:T83 12.94 1 Yes No 5 3 1 2
R:R:F163 R:R:Q93 29.28 1 Yes Yes 4 6 1 2
R:R:L97 R:R:Y96 3.52 1 Yes Yes 5 6 2 2
R:R:F163 R:R:Y96 4.13 1 Yes Yes 4 6 1 2
R:R:D266 R:R:Y96 12.64 1 Yes Yes 7 6 2 2
R:R:F163 R:R:L97 4.87 1 Yes Yes 4 5 1 2
R:R:R164 R:R:R255 5.33 1 Yes Yes 5 4 1 1
R:R:H168 R:R:M173 3.94 1 No Yes 3 4 2 2
R:R:H168 R:R:R240 9.03 1 No Yes 3 5 2 1
R:R:L237 R:R:M173 5.65 1 Yes Yes 6 4 1 2
R:R:M173 R:R:R240 4.96 1 Yes Yes 4 5 2 1
R:R:H234 R:R:L237 6.43 0 Yes Yes 9 6 2 1
R:R:L237 R:R:R240 3.64 1 Yes Yes 6 5 1 1
R:R:L258 R:R:R240 4.86 1 No Yes 5 5 1 1
R:R:K263 R:R:Y259 9.55 0 Yes Yes 4 4 2 1
R:R:K263 R:R:S262 4.59 0 Yes No 4 6 2 1
R:R:D266 R:R:S262 4.42 1 Yes No 7 6 2 1
R:R:I254 R:R:R240 2.51 0 No Yes 4 5 2 1
R:R:G236 R:R:L258 1.71 0 No No 5 5 2 1
R:R:K20 R:R:Y259 1.19 0 No Yes 2 4 2 1

Location and physicochemical properties of the interaction partners of this ligand

Interactions of this ligand

Similarities between the interactions of this ligand and those of other networks

PDB Summary
PDB 8H8J_nogp
Class
SubFamily
Type
SubType
Species
Ligand
Other Ligand(s)
Protein Partners
PDB Resolution
Date
D.O.I.
Net Summary
Imin 3.28
Number of Linked Nodes 250
Number of Links 282
Number of Hubs 39
Number of Links mediated by Hubs 143
Number of Communities 5
Number of Nodes involved in Communities 51
Number of Links involved in Communities 72
Path Summary
Number Of Nodes in MetaPath 77
Number Of Links MetaPath 76
Number of Shortest Paths 43390
Length Of Smallest Path 3
Average Path Length 12.5786
Length of Longest Path 29
Minimum Path Strength 1.33
Average Path Strength 7.58993
Maximum Path Strength 35.58
Minimum Path Correlation 0.7
Average Path Correlation 0.917941
Maximum Path Correlation 0.99
Minimum % Of Corr. Nodes 5.26316
Average % Of Corr. Nodes 48.6052
Maximum % Of Corr. Nodes 100
Minimum Path Hubs % 0
Average Path Hubs % 48.0331
Maximum Path Hubs % 100
AnnotationTypeLinks
Gene OntologyMolecular Function
Gene OntologyBiological Process
Gene OntologyCellular Component
SCOP2Domain Identifier• Transducin (heterotrimeric G protein), gamma chain
SCOP2Family Identifier• Transducin (heterotrimeric G protein), gamma chain
Membrane Protein Annotations-• Orientations of Proteins in Membranes database (OPM)   • Protein Data Bank of Transmembrane Proteins (PDBTM)   • MemProtMD


Details about the values in these tables can be found in the corresponding documentation page .
CodeCA
PDB ResiduesI:I:?1
Environment DetailsOpen EMBL-EBI Page
CodeCA
NameCALCIUM ION
Synonyms
Identifier
FormulaCa
Molecular Weight40.078
SMILES
PubChem
Formal Charge2
Total Atoms1
Total Chiral Atoms0
Total Bonds0
Total Aromatic Bonds0

CodeWYB
PDB ResiduesL:L:?1
Environment DetailsOpen EMBL-EBI Page
CodeWYB
NameLodoxamide
SynonymsLodoxamide
Identifier
FormulaC11 H6 Cl N3 O6
Molecular Weight311.635
SMILES
PubChem44564
Formal Charge0
Total Atoms27
Total Chiral Atoms0
Total Bonds27
Total Aromatic Bonds6

PDBsumOpen PDBsum Page
ChainR
ProteinReceptor
UniProtQ9HC97
Sequence
>8H8J_nogp_Chain_R
NTCGSSDLT WPPAIKLGF YAYLGVLLV LGLLLNSLA LWVFCCRMQ 
QWTETRIYM TNLAVADLC LLCTLPFVL HSLRDTSDT PLCQLSQGI 
YLTNRYMSI SLVTAIAVD RYVAVRHPL RARGLRSPR QAAAVCAVL 
WVLVIGSLV ARWLLGIQE GGFCFRSTR HNFNSMAFP LLGFYLPLA 
VVVFCSLKV VTALAQRPP TDVGQAEAT RKAARMVWA NLLVFVVCF 
LPLHVGLTV RLAVGWNAC ALLETIRRA LYITSKLSD ANCCLDAIC 
YYYMAKEFQ EASA


Click on each residue to open a popup with some information about it.

ConSurf Conservation Grade (See documentation): 

 n/a   1    2    3    4    5    6    7    8    9  




This receptor, from the same or other species and bound to the same or other ligands, is also present in the following networks:
Show PDB Class SubFamily Type SubType Species Orthosteric Ligand Other Ligand(s) Protein Partners Resolution Date DOI
8H8JAOrphanOrphanGPR35Homo sapiensLodoxamideCachim(NtGi1L-G13)/β1/γ23.22023-02-08doi.org/10.1038/s41421-022-00499-8
8H8J (No Gprot) AOrphanOrphanGPR35Homo sapiensLodoxamideCa3.22023-02-08doi.org/10.1038/s41421-022-00499-8




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