Color ConSurf Grade
      No Conservation data available
      1
      2
      3
      4
      5
      6
      7
      8
      9

Index: hub id, click on each number to highlight the corresponding hub in the 3D visualization.

Hub: the hub being considered.

Avg Int. Strength: the average interaction strength of all the links of the corresponding hub.

Num Of Links: the number of links of the corresponding hub.

Community: the id of the community the link belong to, otherwise 0.

ConSurf: this column reports the ConSurf conservation grades of each hub.

Index Hub Avg Int. Strength Num Of Links Community ConSurf
1R:R:V282 6.8675415
2R:R:L291 7.7475404
3R:R:D295 5.6975415
4R:R:L308 4.6075405
5R:R:M309 5.415406
6R:R:Y310 4.26254115
7R:R:F311 6.338336117
8R:R:W326 6.305447
9R:R:R347 6.185409
10R:R:Y350 6.9469
11R:R:P351 4.492569
12R:R:Y362 5.205409
13R:R:Y369 5.075608
14R:R:V379 3.925406
15R:R:C402 3.08439
16R:R:Y410 6.8075439
17R:R:F411 5.9175408
18R:R:W419 8.94667629
19R:R:W420 8.7425409
20R:R:W427 6.418509
21R:R:I440 3.9875469
22R:R:P455 4.89254149
23R:R:I462 4.2025407
24R:R:Q467 5.014506
25R:R:V468 3.71539
26R:R:D469 5.9625498
27R:R:S474 5.05754127
28R:R:V479 5.695639
29R:R:Y498 5.6407
30R:R:R536 9.5425459
31R:R:P547 4.29409
32R:R:Y555 7.646574
33R:R:R562 4.4725477
34R:R:Y577 6.536504
35R:R:Y607 6.02254128
36R:R:W620 8.085659
37R:R:I621 3.835457
38R:R:W630 7.42254139
   

Color ConSurf Grade
      No Conservation data available
      1
      2
      3
      4
      5
      6
      7
      8
      9

Index: link id, click on each number to highlight the corresponding link in the 3D visualization.

Node1 Node2: the two nodes of the corresponding link.

Recurrence: the relative Recurrence in the pool of shortest paths.

Int. Strength: the interaction strength between the two nodes.

Hub1?, Hub2?: "Yes" if the corresponding node has more than 3 links, otherwise "No".

Community: the id of the community the link belong to, otherwise 0.

ConSurf1, ConSurf2: these columns report the ConSurf conservation grades of the two nodes involved in a link.

Index Node1 Node2 Recurrence Int. Strength Hub1? Hub2? Community ConSurf1 ConSurf2
1R:R:M309 R:R:P299 15.71366.71YesNo067
2R:R:M309 R:R:Y310 30.87323.59YesYes065
3R:R:F311 R:R:Y310 34.14525.16YesYes1175
4R:R:F311 R:R:L473 49.76127.31YesNo078
5R:R:D471 R:R:L473 51.65845.43NoNo098
6R:R:D471 R:R:Y607 31.33768.05NoYes1298
7R:R:K606 R:R:Y607 33.12144.78NoYes098
8R:R:K606 R:R:Y555 41.78695.97NoYes094
9R:R:L487 R:R:Y555 17.35239.38NoYes784
10R:R:L487 R:R:R562 16.20973.64NoYes787
11R:R:E566 R:R:R562 28.04182.33NoYes067
12R:R:E566 R:R:L291 23.37656.63NoYes064
13R:R:E558 R:R:Y555 17.48164.49NoYes794
14R:R:E558 R:R:R562 16.34439.3NoYes797
15R:R:V491 R:R:Y555 10.20411.36NoYes084
16R:R:V479 R:R:V491 10.52594.81YesNo098
17R:R:Q467 R:R:V479 19.61375.73YesYes069
18R:R:D469 R:R:Q467 14.93797.83YesYes086
19R:R:D469 R:R:Q395 12.4975.22YesNo986
20R:R:Q395 R:R:Y288 11.76615.64NoNo066
21R:R:P299 R:R:Y577 12.204112.52NoYes074
22R:R:G475 R:R:R320 11.07484.5NoNo095
23R:R:G475 R:R:S474 12.51551.86NoYes097
24R:R:F406 R:R:V468 15.389111.8NoYes399
25R:R:F406 R:R:V479 14.0465.24NoYes399
26R:R:F311 R:R:L308 11.90333.65YesYes075
27R:R:M309 R:R:W569 13.36788.14YesNo065
28R:R:F478 R:R:K606 25.65113.72NoNo069
29R:R:F478 R:R:L409 46.88237.31NoNo066
30R:R:L409 R:R:Y369 47.25185.86NoYes068
31R:R:L611 R:R:Y369 10.63677.03NoYes088
32R:R:I323 R:R:Y607 36.11633.63NoYes078
33R:R:I323 R:R:Y369 36.17173.63NoYes078
34R:R:V365 R:R:Y369 1003.79NoYes088
35R:R:V365 R:R:Y362 99.51983.79NoYes089
36R:R:G614 R:R:Y362 73.09024.35NoYes099
37R:R:F348 R:R:R347 20.60855.34NoYes099
38R:R:F348 R:R:I621 44.87435.02NoYes097
39R:R:I621 R:R:T337 63.79923.04YesNo079
40R:R:S359 R:R:T337 64.64369.59NoNo089
41R:R:S359 R:R:S617 65.43793.26NoNo089
42R:R:G614 R:R:S617 67.7893.71NoNo099
43R:R:I356 R:R:Y341 24.664218.13NoNo089
44R:R:F348 R:R:I356 25.66963.77NoNo098
45R:R:R353 R:R:Y341 22.64564.12NoNo099
46R:R:R353 R:R:Y350 21.66938.23NoYes099
47R:R:I440 R:R:Y350 12.11183.63YesYes699
48R:R:I621 R:R:W620 18.18093.52YesYes579
49R:R:I355 R:R:W620 11.96145.87NoYes599
50R:R:I355 R:R:L423 10.94282.85NoNo099
51R:R:V613 R:R:Y362 43.77395.05NoYes089
52R:R:S417 R:R:Y498 11.76356.36NoYes087
53R:R:L495 R:R:S417 12.63163NoNo088
54R:R:L495 R:R:M414 16.05142.83NoNo089
55R:R:M414 R:R:Y410 18.56084.79NoYes099
56R:R:V479 R:R:Y410 18.510712.62YesYes399
57R:R:S474 R:R:V476 26.20794.85YesNo077
58R:R:G502 R:R:W420 24.93344.22NoYes099
59R:R:W420 R:R:Y544 30.997226.04YesNo099
60R:R:V613 R:R:Y544 31.98933.79NoNo089
61R:R:G502 R:R:S424 23.90433.71NoNo098
62R:R:L506 R:R:W427 16.55013.42NoYes089
63R:R:L506 R:R:S424 19.73513NoNo088
64R:R:L492 R:R:Y555 18.20467.03NoYes084
65R:R:L492 R:R:Q559 13.46545.32NoNo087
66R:R:P547 R:R:V613 13.57633.53YesNo098
67R:R:F556 R:R:Q559 12.26757.03NoNo047
68R:R:F478 R:R:V479 36.9293.93NoYes069
69R:R:D471 R:R:S474 21.28935.89NoYes1297
70R:R:V476 R:R:Y369 26.43485.05NoYes078
Download PSN data

2D representation of the global metapath, ligand(s) interactions and
histograms of path distribution according to several parameters
(click on the image to enlarge it 🔍):

A 2D representation of the global communication in the network.

ConSurf Conservation Grade (See documentation): 

 n/a   1    2    3    4    5    6    7    8    9  

Number of shortest communication paths as a function of the average residue correlation.

Number of shortest communication paths as a function of the average interaction strength of their links.

Number of shortest communication paths as a function of the % of hub nodes in each path.

Number of shortest communication paths as a function of the number of nodes in each path.

Number of shortest communication paths as a function of the % of correlated nodes in each path.


PDB Summary
PDB 8J9O
Class F
SubFamily Protein
Type Frizzled
SubType FZD1
Species Homo Sapiens
Ligand -
Other Ligand(s) -
Protein Partners -
PDB Resolution 3.4
Date 2024-01-17 
D.O.I. 10.1038/s41421-023-00627-y
Net Summary
Imin 3.04
Number of Linked Nodes 314
Number of Links 346
Number of Hubs 38
Number of Links mediated by Hubs 150
Number of Communities 16
Number of Nodes involved in Communities 63
Number of Links involved in Communities 71
Path Summary
Number Of Nodes in MetaPath 71
Number Of Links MetaPath 70
Number of Shortest Paths 68873
Length Of Smallest Path 3
Average Path Length 15.6244
Length of Longest Path 31
Minimum Path Strength 1.45
Average Path Strength 5.54237
Maximum Path Strength 16.065
Minimum Path Correlation 0.7
Average Path Correlation 0.935444
Maximum Path Correlation 0.99
Minimum % Of Corr. Nodes 4
Average % Of Corr. Nodes 48.9708
Maximum % Of Corr. Nodes 100
Minimum Path Hubs % 0
Average Path Hubs % 35.0607
Maximum Path Hubs % 100
AnnotationTypeLinks
Gene OntologyMolecular Function• binding   • tetrapyrrole binding   • heme binding   • electron transfer activity   • cation binding   • transition metal ion binding   • iron ion binding   • ion binding   • metal ion binding   • small molecule binding   • protein binding   • signaling receptor binding   • molecular transducer activity   • transmembrane signaling receptor activity   • signaling receptor activity   • Wnt receptor activity   • G protein-coupled receptor activity   • PDZ domain binding   • protein domain specific binding   • G protein-coupled receptor binding   • frizzled binding   • Wnt-protein binding   • electron transport chain   • metabolic process   • cellular process   • generation of precursor metabolites and energy   • regulation of cellular process   • negative regulation of biological process   • RNA metabolic process   • regulation of primary metabolic process   • negative regulation of RNA biosynthetic process   • RNA biosynthetic process   • nucleobase-containing compound metabolic process   • DNA-templated transcription   • nucleic acid biosynthetic process   • regulation of RNA metabolic process
Gene OntologyBiological Process• electron transport chain   • metabolic process   • cellular process   • generation of precursor metabolites and energy   • regulation of cellular process   • negative regulation of biological process   • RNA metabolic process   • regulation of primary metabolic process   • negative regulation of RNA biosynthetic process   • RNA biosynthetic process   • nucleobase-containing compound metabolic process   • DNA-templated transcription   • nucleic acid biosynthetic process   • regulation of RNA metabolic process   • negative regulation of cellular process   • negative regulation of nucleobase-containing compound metabolic process   • regulation of nucleobase-containing compound metabolic process   • regulation of RNA biosynthetic process   • negative regulation of macromolecule metabolic process   • regulation of biosynthetic process   • negative regulation of DNA-templated transcription   • regulation of biological process   • negative regulation of metabolic process   • biological regulation   • primary metabolic process   • regulation of macromolecule metabolic process   • nucleobase-containing compound biosynthetic process   • gene expression   • macromolecule biosynthetic process   • nucleic acid metabolic process   • regulation of gene expression   • biosynthetic process   • negative regulation of biosynthetic process   • negative regulation of macromolecule biosynthetic process   • regulation of macromolecule biosynthetic process   • macromolecule metabolic process   • regulation of DNA-templated transcription   • regulation of metabolic process   • negative regulation of RNA metabolic process   • response to stimulus   • response to chemical   • response to xenobiotic stimulus   • astrocyte-dopaminergic neuron signaling   • glial cell-neuron signaling   • signaling   • cell-cell signaling   • cell communication   • cellular response to stimulus   • cell surface receptor signaling pathway   • canonical Wnt signaling pathway   • signal transduction   • Wnt signaling pathway   • non-canonical Wnt signaling pathway   • multicellular organismal process   • regulation of cellular component organization   • regulation of presynapse assembly   • cellular component organization   • cellular component biogenesis   • multicellular organism development   • cellular component assembly   • regulation of presynapse organization   • cell junction assembly   • anatomical structure development   • regulation of synapse structure or activity   • regulation of synapse assembly   • synapse organization   • cellular component organization or biogenesis   • regulation of biological quality   • system development   • developmental process   • presynapse organization   • nervous system development   • regulation of cellular component biogenesis   • regulation of cell junction assembly   • regulation of synapse organization   • cell junction organization   • synapse assembly   • presynapse assembly   • positive regulation of DNA-binding transcription factor activity   • positive regulation of molecular function   • regulation of molecular function   • regulation of DNA-binding transcription factor activity   • negative regulation of signaling   • regulation of canonical Wnt signaling pathway   • regulation of signal transduction   • negative regulation of cell communication   • negative regulation of Wnt signaling pathway   • regulation of signaling   • regulation of Wnt signaling pathway   • negative regulation of response to stimulus   • negative regulation of signal transduction   • negative regulation of canonical Wnt signaling pathway   • regulation of response to stimulus   • regulation of cell communication   • heart development   • cardiac chamber morphogenesis   • animal organ development   • heart morphogenesis   • ventricular septum development   • circulatory system development   • anatomical structure morphogenesis   • cardiac septum development   • cardiac septum morphogenesis   • ventricular septum morphogenesis   • cardiac chamber development   • membranous septum morphogenesis   • animal organ morphogenesis   • cardiac ventricle development   • hard palate development   • secondary palate development   • roof of mouth development   • cellular developmental process   • generation of neurons   • neurogenesis   • neuron differentiation   • cell differentiation   • muscle structure development   • muscle organ development   • tissue development   • muscle tissue morphogenesis   • tissue morphogenesis   • muscular septum morphogenesis   • muscle organ morphogenesis   • cell surface receptor protein serine/threonine kinase signaling pathway   • cellular response to growth factor stimulus   • regulation of transmembrane receptor protein serine/threonine kinase signaling pathway   • negative regulation of cellular response to growth factor stimulus   • negative regulation of BMP signaling pathway   • cellular response to endogenous stimulus   • BMP signaling pathway   • enzyme-linked receptor protein signaling pathway   • cellular response to BMP stimulus   • regulation of BMP signaling pathway   • response to endogenous stimulus   • regulation of cellular response to growth factor stimulus   • response to BMP   • transforming growth factor beta receptor superfamily signaling pathway   • response to growth factor   • negative regulation of transmembrane receptor protein serine/threonine kinase signaling pathway   • epithelium development   • endothelial cell differentiation   • endothelium development   • epithelial cell differentiation   • autocrine signaling   • regulation of neuron projection development   • positive regulation of cellular component organization   • cell projection organization   • positive regulation of biological process   • cell development   • neuron projection development   • positive regulation of neuron projection development   • positive regulation of cell projection organization   • positive regulation of cellular process   • plasma membrane bounded cell projection organization   • regulation of cell projection organization   • neuron development   • regulation of plasma membrane bounded cell projection organization   • regulation of osteoblast differentiation   • regulation of developmental process   • regulation of cell differentiation   • osteoblast differentiation   • positive regulation of developmental process   • positive regulation of osteoblast differentiation   • ossification   • positive regulation of cell differentiation   • positive regulation of DNA-templated transcription   • positive regulation of macromolecule biosynthetic process   • positive regulation of metabolic process   • positive regulation of biosynthetic process   • positive regulation of macromolecule metabolic process   • positive regulation of nucleobase-containing compound metabolic process   • positive regulation of RNA metabolic process   • positive regulation of RNA biosynthetic process   • head development   • dopaminergic neuron differentiation   • brain development   • central nervous system neuron differentiation   • central nervous system development   • midbrain development   • midbrain dopaminergic neuron differentiation   • intrinsic apoptotic signaling pathway in response to oxidative stress   • neuron apoptotic process   • regulation of oxidative stress-induced intrinsic apoptotic signaling pathway   • negative regulation of neuron apoptotic process   • negative regulation of intracellular signal transduction   • regulation of programmed cell death   • regulation of intrinsic apoptotic signaling pathway   • intracellular signal transduction   • regulation of intracellular signal transduction   • negative regulation of apoptotic signaling pathway   • intrinsic apoptotic signaling pathway   • regulation of oxidative stress-induced neuron intrinsic apoptotic signaling pathway   • negative regulation of programmed cell death   • regulation of apoptotic process   • negative regulation of oxidative stress-induced intrinsic apoptotic signaling pathway   • cell death   • neuron intrinsic apoptotic signaling pathway in response to oxidative stress   • apoptotic signaling pathway   • negative regulation of intrinsic apoptotic signaling pathway   • negative regulation of apoptotic process   • negative regulation of oxidative stress-induced neuron intrinsic apoptotic signaling pathway   • apoptotic process   • programmed cell death   • regulation of neuron apoptotic process   • regulation of apoptotic signaling pathway   • stem cell differentiation   • regulation of stem cell differentiation   • mesenchymal stem cell differentiation   • regulation of mesenchymal stem cell differentiation   • outflow tract morphogenesis   • cellular anatomical structure   • periplasmic space   • anchoring junction   • cell junction   • focal adhesion   • cell-substrate junction   • cell surface   • cell periphery   • plasma membrane   • membrane   • protein-containing complex   • Wnt signalosome
Gene OntologyCellular Component
SCOP2Domain Identifier• Cytochromes
SCOP2Family Identifier• Cytochromes
Membrane Protein Annotations-• Orientations of Proteins in Membranes database (OPM)   • Protein Data Bank of Transmembrane Proteins (PDBTM)   • MemProtMD


Details about the values in these tables can be found in the corresponding documentation page .
PDBsumOpen PDBsum Page
ChainR
ProteinReceptor
UniProtQ9UP38
Sequence
>8J9O_Chain_R
PRALKVPSY LNYHFLGEK DCGAPCEPT KVYGLMYFG PEELRFSRT 
WIGIWSVLC CASTLFTVL TYLVDMRRF SYPERPIIF LSGCYTAVA 
VAYIAGFLL EDRVVCNDK FAEDGARTV AQGTKKEGC TILFMMLYF 
FSMASSIWW VILSLTWFL AAGMKWGHE AIEANSQYF HLAAWAVPA 
IKTITILAL GQVDGDVLS GVCFVGLNN VDALRGFVL APLFVYLFI 
GTSFLLAGF VSLFEKLEK LMVRIGVFS VLYTVPATI VIACYFYEQ 
AFRDQWERS WVAQSCKSY AIPCPHLQM SPDFTVFMI KYLMTLIVG 
ITSGFWIWS GKTLNSWRK FYTR


Click on each residue to open a popup with some information about it.

ConSurf Conservation Grade (See documentation): 

 n/a   1    2    3    4    5    6    7    8    9  




This receptor, from the same or other species and bound to the same or other ligands, is also present in the following networks:
Show PDB Class SubFamily Type SubType Species Orthosteric Ligand Other Ligand(s) Protein Partners Resolution Date DOI
8J9NFProteinFrizzledFZD1Homo sapiens--chim(Gs-CtGq)/β1/γ23.52024-01-1710.1038/s41421-023-00627-y
8J9N (No Gprot) FProteinFrizzledFZD1Homo sapiens--3.52024-01-1710.1038/s41421-023-00627-y




You can download a compressed (zip) file with structure(s), 3D outputs (as PyMol and VMD scripts) and numerical data files (as csv and plain text files).

Download 8J9O.zip



You can click to copy the link of this page to easily come back here later

or use this QR code to link and share this page.



You can also  read or  download a guide explaining the meaning of all files and numerical data.