Color ConSurf Grade
      No Conservation data available
      1
      2
      3
      4
      5
      6
      7
      8
      9

Index: hub id, click on each number to highlight the corresponding hub in the 3D visualization.

Hub: the hub being considered.

Avg Int. Strength: the average interaction strength of all the links of the corresponding hub.

Num Of Links: the number of links of the corresponding hub.

Community: the id of the community the link belong to, otherwise 0.

ConSurf: this column reports the ConSurf conservation grades of each hub.

Index Hub Avg Int. Strength Num Of Links Community ConSurf
1L:L:?1 7.19167630
2R:R:F21 7.6875413
3R:R:F25 10.7625415
4R:R:V29 11.425414
5R:R:N45 5.3525409
6R:R:F52 5.005447
7R:R:R63 3.2775447
8R:R:L66 5.645448
9R:R:F74 5.9425407
10R:R:Y87 9.5375415
11R:R:W93 7.02559
12R:R:F105 7.0975405
13R:R:I115 7.3475498
14R:R:Y126 5.63857728
15R:R:W152 5.05679
16R:R:E190 7.6275404
17R:R:F193 12.11405
18R:R:F197 6.62408
19R:R:I226 3.456507
20R:R:F232 7.2225407
21R:R:V248 5.1175408
22R:R:R251 10.145406
23R:R:Y269 5.38167604
24R:R:R270 6.498512
25R:R:F276 5.77404
26R:R:F277 11.3725415
27R:R:L280 5.015435
28R:R:Y284 8.566537
29R:R:Y295 5.38167645
   

Color ConSurf Grade
      No Conservation data available
      1
      2
      3
      4
      5
      6
      7
      8
      9

Index: link id, click on each number to highlight the corresponding link in the 3D visualization.

Node1 Node2: the two nodes of the corresponding link.

Recurrence: the relative Recurrence in the pool of shortest paths.

Int. Strength: the interaction strength between the two nodes.

Hub1?, Hub2?: "Yes" if the corresponding node has more than 3 links, otherwise "No".

Community: the id of the community the link belong to, otherwise 0.

ConSurf1, ConSurf2: these columns report the ConSurf conservation grades of the two nodes involved in a link.

Index Node1 Node2 Recurrence Int. Strength Hub1? Hub2? Community ConSurf1 ConSurf2
1L:L:?1 R:R:I178 34.37544.2YesNo003
2R:R:I178 R:R:S181 33.263910.84NoNo035
3R:R:S181 R:R:V20 32.03653.23NoNo052
4L:L:?1 R:R:R22 42.47145.96YesNo005
5R:R:F277 R:R:R22 63.609826.72YesNo055
6R:R:F277 R:R:L274 32.90723.65YesNo153
7R:R:L274 R:R:R270 32.50896.07NoYes132
8R:R:D273 R:R:R270 20.11493.57NoYes042
9R:R:D273 R:R:Y269 16.53935.75NoYes044
10R:R:D23 R:R:V20 28.29888.76NoNo052
11L:L:?1 R:R:Y284 53.83725.75YesYes307
12R:R:L280 R:R:Y284 52.17914.69YesYes357
13R:R:D23 R:R:V176 24.47784.38NoNo051
14R:R:F277 R:R:V29 24.50096.55YesYes154
15R:R:P31 R:R:V29 18.79957.07NoYes064
16R:R:L280 R:R:R22 34.44493.64YesNo055
17R:R:F276 R:R:L280 46.76497.31YesYes045
18R:R:F276 R:R:T279 12.87575.19YesNo046
19R:R:P246 R:R:T279 11.48165.25NoNo096
20R:R:F282 R:R:P246 10.07838.67NoNo079
21R:R:N110 R:R:Y284 1004.65NoYes087
22R:R:L76 R:R:N110 99.49525.49NoNo068
23R:R:L76 R:R:S287 98.99034.5NoNo068
24R:R:D73 R:R:S287 97.017310.31NoNo098
25R:R:D73 R:R:N45 96.535610.77NoYes099
26R:R:F74 R:R:N45 19.0822.42YesYes079
27R:R:N45 R:R:P291 88.12936.52YesNo099
28R:R:P291 R:R:Y295 87.51334.17NoYes095
29R:R:F52 R:R:Y295 23.11617.22YesYes475
30R:R:F52 R:R:L56 13.1863.65YesNo076
31R:R:L66 R:R:Y295 60.76619.38YesYes485
32R:R:L66 R:R:R63 18.85973.64YesYes487
33R:R:L56 R:R:W59 11.14829.11NoNo066
34R:R:N141 R:R:W59 10.15243.39NoNo036
35L:L:?1 R:R:F180 32.10134.78YesNo004
36R:R:F180 R:R:H189 29.44757.92NoNo045
37R:R:H189 R:R:M192 27.12710.51NoNo055
38R:R:M192 R:R:Q112 26.41848.16NoNo057
39R:R:Q112 R:R:T155 16.95614.25NoNo077
40R:R:T155 R:R:W152 16.29383.64NoYes079
41R:R:F117 R:R:W152 12.389412.03NoYes779
42R:R:F117 R:R:L151 12.68124.87NoNo077
43R:R:I147 R:R:L151 11.97722.85NoNo047
44R:R:I147 R:R:T143 11.63451.52NoNo043
45R:R:I139 R:R:T143 10.26351.52NoNo073
46R:R:L66 R:R:Y294 51.85034.69YesNo089
47R:R:R125 R:R:Y294 49.738311.32NoNo099
48R:R:I233 R:R:R125 47.69125.01NoNo079
49R:R:I233 R:R:S208 46.6633.1NoNo078
50R:R:M234 R:R:S208 45.52823.07NoNo058
51R:R:I212 R:R:M234 44.38422.92NoNo055
52R:R:I212 R:R:I230 43.2317.36NoNo055
53R:R:I226 R:R:I230 40.89672.94YesNo075
54R:R:I226 R:R:L215 29.91995.71YesNo078
55R:R:L215 R:R:V129 28.65084.47NoNo088
56R:R:I211 R:R:V129 27.38647.68NoNo088
57R:R:I211 R:R:Y126 26.10812.42NoYes088
58R:R:F52 R:R:R63 17.7254.28YesYes477
59R:R:R63 R:R:S298 31.86053.95YesNo078
60R:R:C79 R:R:F107 20.35118.38NoNo066
61R:R:C79 R:R:M106 17.30816.48NoNo065
62R:R:V176 R:R:Y86 20.57342.52NoNo015
63R:R:W93 R:R:Y86 19.350711.58YesNo095
64R:R:F105 R:R:M106 14.9463.73YesNo055
65R:R:F276 R:R:R251 36.30225.34YesYes046
66R:R:F193 R:R:R251 28.18325.66YesYes056
67R:R:F193 R:R:R111 15.97429.62YesNo057
68R:R:E196 R:R:Q112 20.036111.47NoNo067
69R:R:E196 R:R:R111 15.13594.65NoNo067
70R:R:E196 R:R:I115 25.237410.93NoYes068
71R:R:I115 R:R:P200 15.33513.39YesNo089
72R:R:F193 R:R:V248 12.74616.55YesYes058
73R:R:P299 R:R:S298 27.04833.56NoNo058
74R:R:P299 R:R:R228 24.61215.76NoNo057
75R:R:R228 R:R:S297 22.3382.64NoNo076
76R:R:F232 R:R:S297 19.887915.85YesNo076
77R:R:F232 R:R:V293 12.48212.62YesNo077
78R:R:F107 R:R:Y284 12.000416.5NoYes367
Download PSN data

2D representation of the global metapath, ligand(s) interactions and
histograms of path distribution according to several parameters
(click on the image to enlarge it 🔍):

A 2D representation of the global communication in the network.

ConSurf Conservation Grade (See documentation): 

 n/a   1    2    3    4    5    6    7    8    9  

Number of shortest communication paths as a function of the average residue correlation.

Number of shortest communication paths as a function of the average interaction strength of their links.

Number of shortest communication paths as a function of the % of hub nodes in each path.

Number of shortest communication paths as a function of the number of nodes in each path.

Number of shortest communication paths as a function of the % of correlated nodes in each path.


2D representation of the interactions of this orthosteric/allosteric ligand.


Links and nodes colored according to ConSurf Conservation Grade (See documentation): 

 n/a   1    2    3    4    5    6    7    8    9  

Node1 Node2 LinkStrength Comm IsNode1Hub? IsNode2Hub? Node1Cons Node2Cons Node1Shell Node2Shell
L:L:?1 R:R:R22 5.96 3 Yes No 0 5 0 1
L:L:?1 R:R:V83 11.7 3 Yes No 0 6 0 1
L:L:?1 R:R:F107 10.76 3 Yes No 0 6 0 1
L:L:?1 R:R:I178 4.2 3 Yes No 0 3 0 1
L:L:?1 R:R:F180 4.78 3 Yes No 0 4 0 1
L:L:?1 R:R:Y284 5.75 3 Yes Yes 0 7 0 1
R:R:F277 R:R:R22 26.72 1 Yes No 5 5 2 1
R:R:L280 R:R:R22 3.64 3 Yes No 5 5 2 1
R:R:C79 R:R:F107 8.38 0 No No 6 6 2 1
R:R:L80 R:R:V83 4.47 0 No No 8 6 2 1
R:R:F107 R:R:Y284 16.5 3 No Yes 6 7 1 1
R:R:N110 R:R:Y284 4.65 0 No Yes 8 7 2 1
R:R:I178 R:R:S181 10.84 0 No No 3 5 1 2
R:R:F180 R:R:S179 9.25 0 No No 4 5 1 2
R:R:F180 R:R:H189 7.92 0 No No 4 5 1 2
R:R:L280 R:R:T283 4.42 3 Yes No 5 8 2 2
R:R:L280 R:R:Y284 4.69 3 Yes Yes 5 7 2 1
R:R:T283 R:R:Y284 11.24 3 No Yes 8 7 2 1

Location and physicochemical properties of the interaction partners of this ligand

Interactions of this ligand

Similarities between the interactions of this ligand and those of other networks

PDB Summary
PDB 8JEF_nogp
Class
SubFamily
Type
SubType
Species
Ligand
Other Ligand(s)
Protein Partners
PDB Resolution
Date
D.O.I.
Net Summary
Imin 3.23
Number of Linked Nodes 263
Number of Links 283
Number of Hubs 29
Number of Links mediated by Hubs 111
Number of Communities 9
Number of Nodes involved in Communities 41
Number of Links involved in Communities 49
Path Summary
Number Of Nodes in MetaPath 79
Number Of Links MetaPath 78
Number of Shortest Paths 44370
Length Of Smallest Path 3
Average Path Length 16.3977
Length of Longest Path 38
Minimum Path Strength 1.38
Average Path Strength 6.73802
Maximum Path Strength 17.64
Minimum Path Correlation 0.7
Average Path Correlation 0.923276
Maximum Path Correlation 0.99
Minimum % Of Corr. Nodes 3.0303
Average % Of Corr. Nodes 44.3607
Maximum % Of Corr. Nodes 100
Minimum Path Hubs % 0
Average Path Hubs % 33.5206
Maximum Path Hubs % 100
AnnotationTypeLinks
Gene OntologyMolecular Function
Gene OntologyBiological Process
Gene OntologyCellular Component
SCOP2Domain Identifier• Ras-like P-loop GTPases   • Transducin (heterotrimeric G protein), gamma chain
SCOP2Family Identifier• Ras-like P-loop GTPases   • Transducin (heterotrimeric G protein), gamma chain
Membrane Protein Annotations-• Orientations of Proteins in Membranes database (OPM)   • Protein Data Bank of Transmembrane Proteins (PDBTM)   • MemProtMD


Details about the values in these tables can be found in the corresponding documentation page .
Code3HO
PDB ResiduesL:L:?1
Environment DetailsOpen EMBL-EBI Page
Code3HO
Name(3S)-3-hydroxyoctanoic acid
Synonyms
Identifier
FormulaC8 H16 O3
Molecular Weight160.211
SMILES
PubChem11367166
Formal Charge0
Total Atoms27
Total Chiral Atoms1
Total Bonds26
Total Aromatic Bonds0

PDBsumOpen PDBsum Page
ChainR
ProteinReceptor
UniProtP49019
Sequence
>8JEF_nogp_Chain_R
NCCVFRDDF IAKVLPPVL GLEFIFGLL GNGLALWIF CFHLKSWKS 
SRIFLFNLA VADFLLIIC LPFVMDYYV RRSDWKFGD IPCRLVLFM 
FAMNRQGSI IFLTVVAVD RYFRVVHPH HALNKISNW TAAIISCLL 
WGITVGLTV HLLKKKLLI QNGTANVCI SFSICHTFR WHEAMFLLE 
FFLPLGIIL FCSARIIWS LRQRQMDRH AKIKRAITF IMVVAIVFV 
ICFLPSVVV RIHIFWLLH TSGTQNCEV YRSVDLAFF ITLSFTYMN 
SMLDPVVYY FSSPS


Click on each residue to open a popup with some information about it.

ConSurf Conservation Grade (See documentation): 

 n/a   1    2    3    4    5    6    7    8    9  




This receptor, from the same or other species and bound to the same or other ligands, is also present in the following networks:
Show PDB Class SubFamily Type SubType Species Orthosteric Ligand Other Ligand(s) Protein Partners Resolution Date DOI
8JEFAAlicarboxylic acidHydroxycarboxylic AcidHCA3Homo sapiens(3S)-3-hydroxyoctanoic acid-Gi1/β1/γ22.962024-12-18doi.org/10.1016/j.celrep.2024.114895
8JEF (No Gprot) AAlicarboxylic acidHydroxycarboxylic AcidHCA3Homo sapiens(3S)-3-hydroxyoctanoic acid-2.962024-12-18doi.org/10.1016/j.celrep.2024.114895
8IHKAAlicarboxylic acidHydroxycarboxylic AcidHCA3Homo sapiensAcifran--3.212023-08-3010.1038/s41467-023-41650-7
8IHJAAlicarboxylic acidHydroxycarboxylic AcidHCA3Homo sapiensAcifran-Gi1/β1/γ23.072023-08-3010.1038/s41467-023-41650-7
8IHJ (No Gprot) AAlicarboxylic acidHydroxycarboxylic AcidHCA3Homo sapiensAcifran-3.072023-08-3010.1038/s41467-023-41650-7




You can download a compressed (zip) file with structure(s), 3D outputs (as PyMol and VMD scripts) and numerical data files (as csv and plain text files).

Download 8JEF_nogp.zip



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