Color ConSurf Grade
      No Conservation data available
      1
      2
      3
      4
      5
      6
      7
      8
      9

Index: hub id, click on each number to highlight the corresponding hub in the 3D visualization.

Hub: the hub being considered.

Avg Int. Strength: the average interaction strength of all the links of the corresponding hub.

Num Of Links: the number of links of the corresponding hub.

Community: the id of the community the link belong to, otherwise 0.

ConSurf: this column reports the ConSurf conservation grades of each hub.

Index Hub Avg Int. Strength Num Of Links Community ConSurf
1R:R:L30 4.618536
2R:R:F67 6.285406
3R:R:L69 5.6175429
4R:R:D73 7.06409
5R:R:Y86 5.298515
6R:R:Y87 6.745435
7R:R:D92 4.2525403
8R:R:W93 4.76619
9R:R:F107 8.13406
10R:R:I115 4.7275458
11R:R:F117 8.4725447
12R:R:Y126 7.362568
13R:R:F127 5.1425405
14R:R:N175 5.85413
15R:R:V176 4.0775401
16R:R:F180 7.49504
17R:R:I182 9.7425482
18R:R:R187 10.78401
19R:R:H189 7.866575
20R:R:F197 5.238508
21R:R:I230 2.5325405
22R:R:F240 4.2975459
23R:R:C243 2.435408
24R:R:Y269 7.998584
25R:R:F276 5.58404
26R:R:M285 4.69405
27R:R:D290 6.525429
28R:R:V293 2.4025407
29R:R:Y294 6.82333629
30R:R:Y295 5.3505
31L:L:?1 9.05556900
   

Color ConSurf Grade
      No Conservation data available
      1
      2
      3
      4
      5
      6
      7
      8
      9

Index: link id, click on each number to highlight the corresponding link in the 3D visualization.

Node1 Node2: the two nodes of the corresponding link.

Recurrence: the relative Recurrence in the pool of shortest paths.

Int. Strength: the interaction strength between the two nodes.

Hub1?, Hub2?: "Yes" if the corresponding node has more than 3 links, otherwise "No".

Community: the id of the community the link belong to, otherwise 0.

ConSurf1, ConSurf2: these columns report the ConSurf conservation grades of the two nodes involved in a link.

Index Node1 Node2 Recurrence Int. Strength Hub1? Hub2? Community ConSurf1 ConSurf2
1R:R:I182 R:R:I254 29.84910.3YesNo025
2R:R:F276 R:R:I254 32.22251.26YesNo045
3R:R:F180 R:R:F276 37.170910.72YesYes044
4L:L:?1 R:R:F180 24.418511.75YesYes004
5L:L:?1 R:R:I178 42.03975.01YesNo003
6R:R:I178 R:R:Y86 41.07553.63NoYes035
7L:L:?1 R:R:F277 24.92726.41YesNo005
8R:R:F277 R:R:L30 19.91523.65NoYes356
9L:L:?1 R:R:F107 19.936419.22YesYes006
10R:R:F107 R:R:Y284 11.00938.25YesNo067
11R:R:L80 R:R:Y284 19.01993.52NoNo087
12L:L:?1 R:R:L280 11.96299.71YesNo005
13R:R:L280 R:R:Y284 10.7553.52NoNo057
14R:R:F180 R:R:F193 38.42125.36YesNo045
15R:R:E196 R:R:F193 40.11667NoNo065
16R:R:E196 R:R:I115 1005.47NoYes068
17R:R:F244 R:R:I115 87.84116.28NoYes598
18R:R:F244 R:R:N286 97.69549.67NoNo099
19R:R:C243 R:R:N286 16.6043.15YesNo089
20R:R:D290 R:R:N286 91.00939.42YesNo099
21R:R:D290 R:R:D73 16.9066.65YesYes099
22R:R:D73 R:R:N45 10.0455.39YesNo099
23R:R:L69 R:R:Y295 80.26497.03YesYes095
24R:R:D290 R:R:L69 79.06235.43YesYes299
25R:R:F52 R:R:Y295 79.49149.28NoYes075
26R:R:F52 R:R:F67 78.83445.36NoYes076
27R:R:F67 R:R:W59 15.602611.02YesNo066
28R:R:L56 R:R:W59 14.33116.83NoNo066
29R:R:L56 R:R:R63 12.9433.64NoNo067
30R:R:F67 R:R:N68 68.23314.83YesNo069
31R:R:N68 R:R:S148 54.03978.94NoNo496
32R:R:F65 R:R:S148 55.62912.64NoNo066
33R:R:A144 R:R:F65 53.57352.77NoNo086
34R:R:A144 R:R:S61 50.3471.71NoNo087
35R:R:I139 R:R:S61 49.23446.19NoNo077
36R:R:I139 R:R:L136 44.74172.85NoNo074
37R:R:F127 R:R:L136 43.59214.87YesNo054
38R:R:F127 R:R:Y126 40.22255.16YesYes058
39R:R:I211 R:R:Y126 30.38942.42NoYes088
40R:R:I211 R:R:I233 29.10738.83NoNo087
41R:R:I212 R:R:I233 26.6495.89NoNo057
42R:R:I212 R:R:I230 24.00532.94NoYes055
43R:R:I230 R:R:L215 13.06492.85YesNo058
44R:R:F117 R:R:N68 13.282114.5YesNo479
45R:R:W93 R:R:Y86 28.03188.68YesYes195
46R:R:N175 R:R:W93 17.88614.52YesYes139
47R:R:D92 R:R:N175 13.98154.04YesYes033
48R:R:F180 R:R:H189 27.48615.66YesYes045
49R:R:H189 R:R:M192 11.07815.25YesNo055
50R:R:H189 R:R:R187 10.807913.54YesYes051
51R:R:F117 R:R:W152 10.26758.02YesNo079
52L:L:?1 R:R:R111 59.85710.65YesNo007
53R:R:F240 R:R:I115 11.57623.77YesYes598
54R:R:H184 R:R:L258 13.01199NoNo033
55R:R:F197 R:R:F240 16.77883.22YesYes089
56R:R:E196 R:R:R111 59.98943.49NoNo067
57R:R:I182 R:R:L258 14.08748.56YesNo823
58R:R:F240 R:R:F244 10.12986.43YesNo599
Download PSN data

2D representation of the global metapath, ligand(s) interactions and
histograms of path distribution according to several parameters
(click on the image to enlarge it 🔍):

A 2D representation of the global communication in the network.

ConSurf Conservation Grade (See documentation): 

 n/a   1    2    3    4    5    6    7    8    9  

Number of shortest communication paths as a function of the average residue correlation.

Number of shortest communication paths as a function of the average interaction strength of their links.

Number of shortest communication paths as a function of the % of hub nodes in each path.

Number of shortest communication paths as a function of the number of nodes in each path.

Number of shortest communication paths as a function of the % of correlated nodes in each path.


2D representation of the interactions of this orthosteric/allosteric ligand.


Links and nodes colored according to ConSurf Conservation Grade (See documentation): 

 n/a   1    2    3    4    5    6    7    8    9  

Node1 Node2 LinkStrength Comm IsNode1Hub? IsNode2Hub? Node1Cons Node2Cons Node1Shell Node2Shell
R:R:L30 R:R:Y87 9.38 3 Yes Yes 6 5 2 2
R:R:F277 R:R:L30 3.65 3 No Yes 5 6 1 2
R:R:F107 R:R:L76 3.65 0 Yes No 6 6 1 2
R:R:V83 R:R:Y87 3.79 0 No Yes 6 5 1 2
L:L:?1 R:R:V83 5.22 0 Yes No 0 6 0 1
R:R:I178 R:R:Y86 3.63 0 No Yes 3 5 1 2
R:R:F277 R:R:Y87 8.25 3 No Yes 5 5 1 2
R:R:L104 R:R:S179 7.51 0 No No 5 5 1 2
L:L:?1 R:R:L104 10.92 0 Yes No 0 5 0 1
R:R:F107 R:R:Y284 8.25 0 Yes No 6 7 1 2
L:L:?1 R:R:F107 19.22 0 Yes Yes 0 6 0 1
R:R:E196 R:R:R111 3.49 0 No No 6 7 2 1
R:R:R111 R:R:T283 5.17 0 No No 7 8 1 2
L:L:?1 R:R:R111 10.65 0 Yes No 0 7 0 1
L:L:?1 R:R:I178 5.01 0 Yes No 0 3 0 1
R:R:F180 R:R:S179 3.96 0 Yes No 4 5 1 2
R:R:F180 R:R:H189 5.66 0 Yes Yes 4 5 1 2
R:R:F180 R:R:F193 5.36 0 Yes No 4 5 1 2
R:R:F180 R:R:F276 10.72 0 Yes Yes 4 4 1 2
L:L:?1 R:R:F180 11.75 0 Yes Yes 0 4 0 1
R:R:E196 R:R:F193 7 0 No No 6 5 2 2
L:L:?1 R:R:F277 6.41 0 Yes No 0 5 0 1
R:R:L280 R:R:Y284 3.52 0 No No 5 7 1 2
L:L:?1 R:R:L280 9.71 0 Yes No 0 5 0 1
L:L:?1 R:R:V103 2.61 0 Yes No 0 5 0 1
R:R:C79 R:R:F107 1.4 0 No Yes 6 6 2 1

Location and physicochemical properties of the interaction partners of this ligand

Interactions of this ligand

Similarities between the interactions of this ligand and those of other networks

PDB Summary
PDB 8IHJ_nogp
Class
SubFamily
Type
SubType
Species
Ligand
Other Ligand(s)
Protein Partners
PDB Resolution
Date
D.O.I.
Net Summary
Imin 3.15
Number of Linked Nodes 261
Number of Links 284
Number of Hubs 31
Number of Links mediated by Hubs 121
Number of Communities 8
Number of Nodes involved in Communities 31
Number of Links involved in Communities 36
Path Summary
Number Of Nodes in MetaPath 59
Number Of Links MetaPath 58
Number of Shortest Paths 37679
Length Of Smallest Path 3
Average Path Length 14.806
Length of Longest Path 38
Minimum Path Strength 1.21
Average Path Strength 6.16529
Maximum Path Strength 17.82
Minimum Path Correlation 0.7
Average Path Correlation 0.920453
Maximum Path Correlation 0.99
Minimum % Of Corr. Nodes 3.57143
Average % Of Corr. Nodes 45.7299
Maximum % Of Corr. Nodes 100
Minimum Path Hubs % 0
Average Path Hubs % 38.866
Maximum Path Hubs % 100
AnnotationTypeLinks
Gene OntologyMolecular Function• binding   • tetrapyrrole binding   • heme binding   • electron transfer activity   • cation binding   • transition metal ion binding   • iron ion binding   • ion binding   • metal ion binding   • small molecule binding   • molecular transducer activity   • G protein-coupled receptor activity   • transmembrane signaling receptor activity   • signaling receptor activity   • nicotinic acid receptor activity   • electron transport chain   • metabolic process   • cellular process   • generation of precursor metabolites and energy   • cellular response to stimulus   • regulation of biological process   • regulation of cellular process   • response to stimulus   • signaling   • biological regulation   • G protein-coupled receptor signaling pathway   • signal transduction   • cell communication   • cellular anatomical structure   • periplasmic space   • cell junction   • cell periphery   • plasma membrane   • membrane   • D2 dopamine receptor binding   • protein binding   • signaling receptor binding   • G protein-coupled receptor binding   • dopamine receptor binding   • phosphorus-oxygen lyase activity   • enzyme regulator activity   • cyclase regulator activity   • molecular function regulator activity   • cyclase activity   • adenylate cyclase regulator activity   • lyase activity   • catalytic activity   • adenylate cyclase activity   • guanyl nucleotide binding   • GTP binding   • nucleotide binding   • guanyl ribonucleotide binding   • purine ribonucleotide binding   • purine ribonucleoside triphosphate binding   • nucleoside phosphate binding   • purine nucleotide binding   • anion binding   • heterocyclic compound binding   • carbohydrate derivative binding   • ribonucleotide binding   • magnesium ion binding   • GDP binding   • G protein-coupled serotonin receptor binding   • protein-containing complex binding   • G-protein beta/gamma-subunit complex binding   • pyrophosphatase activity   • GTPase activity   • G protein activity   • ribonucleoside triphosphate phosphatase activity   • hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides   • hydrolase activity   • hydrolase activity, acting on acid anhydrides   • adenylate cyclase-inhibiting serotonin receptor signaling pathway   • G protein-coupled serotonin receptor signaling pathway   • adenylate cyclase-inhibiting G protein-coupled receptor signaling pathway   • adenylate cyclase-modulating G protein-coupled receptor signaling pathway   • response to hormone   • response to chemical   • response to endogenous stimulus   • response to peptide hormone   • response to oxygen-containing compound   • response to nitrogen compound   • cell division   • leukocyte migration   • immune system process   • mononuclear cell migration   • lymphocyte migration   • cell migration   • T cell migration   • cell motility   • regulation of steroid biosynthetic process   • regulation of cholesterol biosynthetic process   • regulation of cholesterol metabolic process   • steroid metabolic process   • regulation of lipid metabolic process   • sterol metabolic process   • positive regulation of biological process   • cholesterol metabolic process   • lipid biosynthetic process   • alcohol metabolic process   • regulation of primary metabolic process   • positive regulation of metabolic process   • regulation of small molecule metabolic process   • positive regulation of biosynthetic process   • positive regulation of lipid metabolic process   • small molecule metabolic process   • steroid biosynthetic process   • positive regulation of cellular process   • regulation of biosynthetic process   • secondary alcohol biosynthetic process   • regulation of alcohol biosynthetic process   • small molecule biosynthetic process   • regulation of steroid metabolic process   • cholesterol biosynthetic process   • positive regulation of cholesterol biosynthetic process   • primary metabolic process   • secondary alcohol metabolic process   • positive regulation of steroid biosynthetic process   • biosynthetic process   • sterol biosynthetic process   • positive regulation of lipid biosynthetic process   • regulation of sterol biosynthetic process   • alcohol biosynthetic process   • positive regulation of cholesterol metabolic process   • positive regulation of steroid metabolic process   • regulation of lipid biosynthetic process   • positive regulation of small molecule metabolic process   • regulation of metabolic process   • positive regulation of alcohol biosynthetic process   • positive regulation of sterol biosynthetic process   • lipid metabolic process   • regulation of cytoskeleton organization   • regulation of cellular component organization   • microtubule cytoskeleton organization   • regulation of mitotic spindle organization   • mitotic cell cycle   • cellular component organization   • cell cycle   • cellular component organization or biogenesis   • regulation of cell cycle   • microtubule cytoskeleton organization involved in mitosis   • spindle organization   • cell cycle process   • regulation of cell cycle process   • regulation of microtubule-based process   • regulation of spindle organization   • regulation of organelle organization   • mitotic spindle organization   • organelle organization   • mitotic cell cycle process   • microtubule-based process   • cytoskeleton organization   • regulation of microtubule cytoskeleton organization   • protein localization   • positive regulation of protein localization to cell periphery   • regulation of localization   • protein localization to cell periphery   • cellular localization   • regulation of protein localization   • positive regulation of protein localization to cell cortex   • regulation of protein localization to cell periphery   • localization   • regulation of cellular localization   • regulation of protein localization to cell cortex   • cellular macromolecule localization   • macromolecule localization   • positive regulation of protein localization   • protein localization to cell cortex   • response to ketone   • response to prostaglandin   • response to lipid   • response to alcohol   • response to prostaglandin E   • cellular response to forskolin   • cellular response to oxygen-containing compound   • cellular response to chemical stimulus   • cellular response to alcohol   • response to forskolin   • cellular response to lipid   • cellular response to ketone   • midbody   • membrane-bounded organelle   • intracellular anatomical structure   • nucleus   • membrane-enclosed lumen   • intracellular membraneless organelle   • intracellular membrane-bounded organelle   • nucleolus   • intracellular organelle lumen   • intracellular organelle   • organelle lumen   • organelle   • membraneless organelle   • nuclear lumen   • cell cortex   • cytoplasm   • protein-containing complex   • extrinsic component of plasma membrane   • catalytic complex   • plasma membrane protein complex   • cytoplasmic side of membrane   • membrane protein complex   • heterotrimeric G-protein complex   • side of membrane   • cytoplasmic side of plasma membrane   • GTPase complex   • extrinsic component of membrane   • extrinsic component of cytoplasmic side of plasma membrane   • extracellular exosome   • extracellular vesicle   • extracellular organelle   • extracellular region   • extracellular space   • vesicle   • extracellular membrane-bounded organelle   • centrosome   • microtubule organizing center   • cytoskeleton   • microtubule cytoskeleton   • centriolar satellite   • cytosol   • nucleoplasm   • vacuolar membrane   • lytic vacuole   • vacuole   • lytic vacuole membrane   • bounding membrane of organelle   • lysosomal membrane   • organelle membrane   • lysosome   • Golgi apparatus   • endomembrane system   • cilium   • plasma membrane bounded cell projection   • ciliary basal body   • cell projection   • cytoskeletal protein binding   • spectrin binding   • enzyme binding   • GTPase binding   • phosphoric ester hydrolase activity   • alkylglycerophosphoethanolamine phosphodiesterase activity   • hydrolase activity, acting on ester bonds   • phosphoric diester hydrolase activity   • multicellular organismal process   • system process   • sensory perception of chemical stimulus   • sensory perception   • nervous system process   • sensory perception of taste   • developmental process   • sensory organ development   • eye development   • animal organ development   • retina development in camera-type eye   • visual system development   • multicellular organism development   • camera-type eye development   • anatomical structure development   • sensory system development   • system development   • response to decreased oxygen levels   • cellular response to oxygen levels   • cellular response to hypoxia   • cellular response to decreased oxygen levels   • cellular response to stress   • response to hypoxia   • response to stress   • response to oxygen levels   • response to abiotic stimulus   • cell population proliferation   • phospholipase C-activating G protein-coupled receptor signaling pathway   • detection of light stimulus   • response to light stimulus   • phototransduction   • detection of external stimulus   • detection of visible light   • response to external stimulus   • detection of abiotic stimulus   • detection of stimulus   • response to radiation   • phototransduction, visible light   • muscle cell apoptotic process   • striated muscle cell apoptotic process   • apoptotic process   • cell death   • programmed cell death   • cardiac muscle cell apoptotic process   • myelin sheath   • non-motile cilium   • 9+0 non-motile cilium   • neuron projection   • photoreceptor outer segment   • photoreceptor cell cilium   • synapse   • G-protein beta-subunit binding   • fibroblast proliferation
Gene OntologyBiological Process
Gene OntologyCellular Component
SCOP2Domain Identifier• Ras-like P-loop GTPases   • WD40 repeat-like   • Transducin (heterotrimeric G protein), gamma chain
SCOP2Family Identifier• Ras-like P-loop GTPases   • WD40 repeat-like   • Transducin (heterotrimeric G protein), gamma chain
Membrane Protein Annotations-• Orientations of Proteins in Membranes database (OPM)   • Protein Data Bank of Transmembrane Proteins (PDBTM)   • MemProtMD


Details about the values in these tables can be found in the corresponding documentation page .
CodeP9X
PDB ResiduesL:L:?1
Environment DetailsOpen EMBL-EBI Page
CodeP9X
Name(5~{S})-5-methyl-4-oxidanylidene-5-phenyl-furan-2-carboxylic acid
SynonymsAcifran
Identifier
FormulaC12 H10 O4
Molecular Weight218.205
SMILES
PubChem76969700
Formal Charge0
Total Atoms26
Total Chiral Atoms1
Total Bonds27
Total Aromatic Bonds6

PDBsumOpen PDBsum Page
ChainR
ProteinReceptor
UniProtP49019
Sequence
>8IHJ_nogp_Chain_R
NCCVFRDDF IAKVLPPVL GLEFIFGLL GNGLALWIF CFHLKSWKS 
SRIFLFNLA VADFLLIIC LPFVMDYYV RRSDWKFGD IPCRLVLFM 
FAMNRQGSI IFLTVVAVD RYFRVVHPH HALNKISNW TAAIISCLL 
WGITVGLTV HLLKKKLLI QNGTANVCI SFSICHTFR WHEAMFLLE 
FFLPLGIIL FCSARIIWS LRQRQMDRH AKIKRAITF IMVVAIVFV 
ICFLPSVVV RIHIFWLLH TSGTQNCEV YRSVDLAFF ITLSFTYMN 
SMLDPVVYY FSSP


Click on each residue to open a popup with some information about it.

ConSurf Conservation Grade (See documentation): 

 n/a   1    2    3    4    5    6    7    8    9  




This receptor, from the same or other species and bound to the same or other ligands, is also present in the following networks:
Show PDB Class SubFamily Type SubType Species Orthosteric Ligand Other Ligand(s) Protein Partners Resolution Date DOI
8JEFAAlicarboxylic acidHydroxycarboxylic AcidHCA3Homo sapiens(3S)-3-hydroxyoctanoic acid-Gi1/β1/γ22.962024-12-18doi.org/10.1016/j.celrep.2024.114895
8JEF (No Gprot) AAlicarboxylic acidHydroxycarboxylic AcidHCA3Homo sapiens(3S)-3-hydroxyoctanoic acid-2.962024-12-18doi.org/10.1016/j.celrep.2024.114895
8IHKAAlicarboxylic acidHydroxycarboxylic AcidHCA3Homo sapiensAcifran--3.212023-08-3010.1038/s41467-023-41650-7
8IHJAAlicarboxylic acidHydroxycarboxylic AcidHCA3Homo sapiensAcifran-Gi1/β1/γ23.072023-08-3010.1038/s41467-023-41650-7
8IHJ (No Gprot) AAlicarboxylic acidHydroxycarboxylic AcidHCA3Homo sapiensAcifran-3.072023-08-3010.1038/s41467-023-41650-7




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