Color ConSurf Grade
      No Conservation data available
      1
      2
      3
      4
      5
      6
      7
      8
      9

Index: hub id, click on each number to highlight the corresponding hub in the 3D visualization.

Hub: the hub being considered.

Avg Int. Strength: the average interaction strength of all the links of the corresponding hub.

Num Of Links: the number of links of the corresponding hub.

Community: the id of the community the link belong to, otherwise 0.

ConSurf: this column reports the ConSurf conservation grades of each hub.

Index Hub Avg Int. Strength Num Of Links Community ConSurf
1R:R:P166 4.8225456
2R:R:Y177 9.09406
3R:R:P187 11.58405
4R:R:C189 5.152529
5R:R:Y193 9.005425
6R:R:Y233 5.856589
7R:R:Y241 8.67538
8R:R:Y245 6.5638
9R:R:M246 5.2175405
10R:R:F252 7.8775448
11R:R:F253 7.2675405
12R:R:F256 5.0625406
13R:R:I268 4.16403
14R:R:L293 5.2325406
15R:R:Y294 6.81619
16R:R:F295 5.3025418
17R:R:W303 10.0267619
18R:R:W304 7.418509
19R:R:F331 3.80833688
20R:R:W336 6.24619
21R:R:T343 3.8825419
22R:R:L346 6.82417
23R:R:D355 7.8925449
24R:R:N356 3.735426
25R:R:S358 3.962548
26R:R:L371 6.6175498
27R:R:Y382 4.83833605
28R:R:V383 2.2625408
29R:R:Y428 8.146538
30R:R:Y439 7.906595
31R:R:W449 7.308509
32R:R:R457 7.6025404
33R:R:W497 7.31479
34R:R:V498 4.2825467
   

Color ConSurf Grade
      No Conservation data available
      1
      2
      3
      4
      5
      6
      7
      8
      9

Index: link id, click on each number to highlight the corresponding link in the 3D visualization.

Node1 Node2: the two nodes of the corresponding link.

Recurrence: the relative Recurrence in the pool of shortest paths.

Int. Strength: the interaction strength between the two nodes.

Hub1?, Hub2?: "Yes" if the corresponding node has more than 3 links, otherwise "No".

Community: the id of the community the link belong to, otherwise 0.

ConSurf1, ConSurf2: these columns report the ConSurf conservation grades of the two nodes involved in a link.

Index Node1 Node2 Recurrence Int. Strength Hub1? Hub2? Community ConSurf1 ConSurf2
1R:R:P166 R:R:Y461 16.16855.56YesNo064
2R:R:R457 R:R:Y461 18.10937.2YesNo044
3R:R:R457 R:R:W453 20.9639YesNo045
4R:R:E450 R:R:W453 22.88847.63NoNo065
5R:R:E450 R:R:L180 23.77053.98NoNo064
6R:R:F179 R:R:L180 24.729818.27NoNo054
7R:R:F179 R:R:P187 25.610224.56NoYes055
8R:R:P187 R:R:S186 33.18153.56YesNo056
9R:R:S186 R:R:Y177 19.64416.36NoYes066
10R:R:S186 R:R:T276 12.87629.59NoNo065
11R:R:P187 R:R:V277 14.64057.07YesNo056
12R:R:P187 R:R:Y366 61.861311.13YesNo055
13R:R:N356 R:R:V277 13.78924.43YesNo066
14R:R:E353 R:R:Y366 62.58244.49NoNo075
15R:R:E353 R:R:L365 64.03165.3NoNo076
16R:R:D355 R:R:L365 64.77513.57YesNo096
17R:R:D355 R:R:S358 45.6264.42YesYes498
18R:R:F252 R:R:S358 56.02195.28YesYes488
19R:R:F252 R:R:L293 1004.87YesYes086
20R:R:L293 R:R:V248 66.87174.47YesNo067
21R:R:V248 R:R:Y245 66.4883.79NoYes078
22R:R:Y241 R:R:Y245 35.773111.91YesYes388
23R:R:P493 R:R:Y241 18.62315.56NoYes088
24R:R:I492 R:R:P493 17.21513.39NoNo088
25R:R:I489 R:R:I492 12.1674.42NoNo058
26R:R:D355 R:R:V360 43.83774.38YesNo497
27R:R:F252 R:R:V360 44.04849.18YesNo487
28R:R:I206 R:R:S358 12.75971.55NoYes078
29R:R:I206 R:R:S210 12.26131.55NoNo078
30R:R:I251 R:R:L293 35.06914.28NoYes066
31R:R:I251 R:R:I292 32.696710.3NoNo065
32R:R:I292 R:R:M247 32.21884.37NoNo055
33R:R:F424 R:R:Y241 17.071213.41NoYes098
34R:R:F424 R:R:I238 16.76126.28NoNo099
35R:R:I238 R:R:W497 16.17.05NoYes099
36R:R:G300 R:R:Y245 35.02974.35NoYes088
37R:R:C244 R:R:G300 34.55693.92NoNo098
38R:R:C244 R:R:W336 32.5993.92NoYes199
39R:R:W303 R:R:W336 14.736511.25YesYes199
40R:R:F296 R:R:M247 26.04029.95NoNo085
41R:R:F296 R:R:W336 24.34615.01NoYes189
42R:R:Y245 R:R:Y428 15.8195.96YesYes388
43R:R:N265 R:R:T278 11.98210.24NoNo046
44R:R:F295 R:R:W336 41.44817.02YesYes189
45R:R:F295 R:R:T343 36.06613.89YesYes189
46R:R:T343 R:R:Y294 33.9664.99YesYes199
47R:R:M298 R:R:Y294 10.512311.97NoYes079
48R:R:L346 R:R:Y294 16.20965.86YesYes179
49R:R:W304 R:R:Y428 14.131811.58YesYes098
50R:R:T308 R:R:W304 11.70978.49NoYes079
51R:R:F417 R:R:W497 11.45274.01NoYes089
52R:R:D355 R:R:Y484 28.65079.2YesNo098
53R:R:E442 R:R:W449 10.83615.45NoYes099
54R:R:E442 R:R:L371 11.55043.98NoYes098
55R:R:K483 R:R:Y484 26.82819.55NoNo088
56R:R:K483 R:R:Y439 21.38111.94NoYes085
57R:R:L371 R:R:Y439 13.134912.89YesYes985
58R:R:I463 R:R:P166 10.20743.39NoYes056
Download PSN data

2D representation of the global metapath, ligand(s) interactions and
histograms of path distribution according to several parameters
(click on the image to enlarge it 🔍):

A 2D representation of the global communication in the network.

ConSurf Conservation Grade (See documentation): 

 n/a   1    2    3    4    5    6    7    8    9  

Number of shortest communication paths as a function of the average residue correlation.

Number of shortest communication paths as a function of the average interaction strength of their links.

Number of shortest communication paths as a function of the % of hub nodes in each path.

Number of shortest communication paths as a function of the number of nodes in each path.

Number of shortest communication paths as a function of the % of correlated nodes in each path.


PDB Summary
PDB 8JHC
Class F
SubFamily Protein
Type Frizzled
SubType FZD3
Species Homo Sapiens
Ligand -
Other Ligand(s) -
Protein Partners -
PDB Resolution 3.3
Date 2024-01-17 
D.O.I. 10.1038/s41421-023-00627-y
Net Summary
Imin 3.56
Number of Linked Nodes 297
Number of Links 325
Number of Hubs 34
Number of Links mediated by Hubs 140
Number of Communities 9
Number of Nodes involved in Communities 44
Number of Links involved in Communities 53
Path Summary
Number Of Nodes in MetaPath 59
Number Of Links MetaPath 58
Number of Shortest Paths 84684
Length Of Smallest Path 3
Average Path Length 17.2382
Length of Longest Path 37
Minimum Path Strength 1.28
Average Path Strength 6.56131
Maximum Path Strength 21.415
Minimum Path Correlation 0.7
Average Path Correlation 0.93197
Maximum Path Correlation 0.99
Minimum % Of Corr. Nodes 3.57143
Average % Of Corr. Nodes 45.97
Maximum % Of Corr. Nodes 100
Minimum Path Hubs % 0
Average Path Hubs % 39.5347
Maximum Path Hubs % 100
AnnotationTypeLinks
Gene OntologyMolecular Function• molecular transducer activity   • transmembrane signaling receptor activity   • signaling receptor activity   • Wnt receptor activity   • G protein-coupled receptor activity   • protein binding   • binding   • PDZ domain binding   • protein domain specific binding   • Wnt-protein binding   • tetrapyrrole binding   • heme binding   • electron transfer activity   • cation binding   • transition metal ion binding   • iron ion binding   • ion binding   • metal ion binding   • small molecule binding   • response to stimulus   • response to chemical   • response to xenobiotic stimulus   • cellular response to stimulus   • regulation of biological process   • regulation of cellular process   • cell surface receptor signaling pathway   • signaling   • canonical Wnt signaling pathway   • biological regulation   • cell communication   • cellular process   • signal transduction   • Wnt signaling pathway
Gene OntologyBiological Process• response to stimulus   • response to chemical   • response to xenobiotic stimulus   • cellular response to stimulus   • regulation of biological process   • regulation of cellular process   • cell surface receptor signaling pathway   • signaling   • canonical Wnt signaling pathway   • biological regulation   • cell communication   • cellular process   • signal transduction   • Wnt signaling pathway   • developmental process   • multicellular organismal process   • head development   • cell population proliferation   • animal organ development   • brain development   • nervous system development   • multicellular organism development   • central nervous system development   • cell proliferation in midbrain   • midbrain development   • anatomical structure development   • neural precursor cell proliferation   • system development   • ear morphogenesis   • embryonic organ morphogenesis   • ear development   • sensory organ development   • embryonic morphogenesis   • embryo development   • anatomical structure morphogenesis   • sensory organ morphogenesis   • inner ear development   • inner ear morphogenesis   • animal organ morphogenesis   • embryonic organ development   • non-canonical Wnt signaling pathway   • epithelium development   • epidermis development   • molting cycle process   • hair cycle   • tissue development   • skin development   • skin epidermis development   • hair follicle development   • molting cycle   • hair cycle process   • sympathetic nervous system development   • ganglion development   • autonomic nervous system development   • sympathetic ganglion development   • cellular developmental process   • generation of neurons   • neurogenesis   • neuron differentiation   • cell differentiation   • neuron migration   • motor neuron migration   • cell migration   • cell motility   • regulation of mitotic cell cycle, embryonic   • negative regulation of biological process   • negative regulation of cell cycle   • mitotic cell cycle   • negative regulation of mitotic cell cycle   • mitotic cell cycle, embryonic   • regulation of mitotic cell cycle   • negative regulation of cellular process   • negative regulation of mitotic cell cycle, embryonic   • cell cycle   • regulation of cell cycle   • commissural neuron axon guidance   • axonogenesis   • cell projection organization   • plasma membrane bounded cell projection morphogenesis   • cell development   • neuron projection development   • cell morphogenesis   • cellular component organization   • cell projection morphogenesis   • neuron projection morphogenesis   • cellular component organization or biogenesis   • plasma membrane bounded cell projection organization   • axon guidance   • axon development   • cell morphogenesis involved in neuron differentiation   • neuron projection guidance   • neuron development   • negative regulation of programmed cell death   • regulation of apoptotic process   • negative regulation of execution phase of apoptosis   • regulation of programmed cell death   • cell death   • regulation of execution phase of apoptosis   • execution phase of apoptosis   • negative regulation of apoptotic process   • apoptotic process   • programmed cell death   • post-anal tail morphogenesis   • response to electrical stimulus   • response to abiotic stimulus   • embryonic epithelial tube formation   • chordate embryonic development   • tube formation   • epithelial tube formation   • tube morphogenesis   • primary neural tube formation   • embryo development ending in birth or egg hatching   • epithelial tube morphogenesis   • morphogenesis of embryonic epithelium   • neural tube development   • tube development   • morphogenesis of an epithelium   • tissue morphogenesis   • neural tube closure   • neural tube formation   • anatomical structure formation involved in morphogenesis   • tube closure   • Wnt signaling pathway, planar cell polarity pathway   • dopaminergic neuron axon guidance   • serotonergic neuron axon guidance   • brain morphogenesis   • midbrain morphogenesis   • neuroblast proliferation   • positive regulation of nervous system development   • positive regulation of cell population proliferation   • regulation of developmental process   • positive regulation of biological process   • regulation of neuroblast proliferation   • regulation of cell differentiation   • regulation of neurogenesis   • regulation of cell development   • regulation of nervous system development   • positive regulation of developmental process   • positive regulation of cell differentiation   • positive regulation of neurogenesis   • regulation of multicellular organismal process   • positive regulation of cellular process   • regulation of neural precursor cell proliferation   • regulation of multicellular organismal development   • positive regulation of cell development   • positive regulation of neural precursor cell proliferation   • regulation of cell population proliferation   • positive regulation of multicellular organismal process   • positive regulation of neuroblast proliferation   • establishment of planar polarity   • establishment of tissue polarity   • morphogenesis of a polarized epithelium   • electron transport chain   • metabolic process   • generation of precursor metabolites and energy   • cell periphery   • cellular anatomical structure   • apical part of cell   • membrane   • plasma membrane   • plasma membrane region   • apical plasma membrane   • cell surface   • filopodium tip   • cell projection   • actin-based cell projection   • filopodium   • plasma membrane bounded cell projection   • somatodendritic compartment
Gene OntologyCellular Component• cell periphery   • cellular anatomical structure   • apical part of cell   • membrane   • plasma membrane   • plasma membrane region   • apical plasma membrane   • cell surface   • filopodium tip   • cell projection   • actin-based cell projection   • filopodium   • plasma membrane bounded cell projection   • somatodendritic compartment   • dendrite   • dendritic tree   • neuron projection   • intracellular anatomical structure   • cytoplasm   • synapse   • cell junction   • glutamatergic synapse   • presynaptic active zone membrane   • presynaptic membrane   • synaptic membrane   • presynapse   • presynaptic active zone   • cell body   • neuronal cell body   • axon   • lateral plasma membrane   • periplasmic space
SCOP2Domain Identifier• Cytochromes
SCOP2Family Identifier• Cytochromes
Membrane Protein Annotations-• Orientations of Proteins in Membranes database (OPM)   • Protein Data Bank of Transmembrane Proteins (PDBTM)   • MemProtMD


Details about the values in these tables can be found in the corresponding documentation page .
PDBsumOpen PDBsum Page
ChainR
ProteinReceptor
UniProtQ9NPG1
Sequence
>8JHC_Chain_R
WCPRELKID PDLGYSFLH VRDCSPPCP NMYFRREEL SFARYFIGL 
ISIICLSAT LFTFLTFLI DVTRFRYPE RPIIFYAVC YMMVSLIFF 
IGFLLEDRV ACNASIPAQ YKASTVTQG SHNKACTML FMILYFFTM 
AGSVWWVIL TITWFLAAV PKWGSEAIE KKALLFHAS AWGIPGTLT 
IILLAMNKI EGDNISGVC FVGLYDVDA LRYFVLAPL CLYVVVGVS 
LLLAGIISL NRDKLVKFM IRIGVFSIL YLVPLLVVI GCYFYEQAY 
RGIWETTWI QERCREYHI PCPYQVTQM SRPDLILFL MKYLMALIV 
GIPSVFWVG


Click on each residue to open a popup with some information about it.

ConSurf Conservation Grade (See documentation): 

 n/a   1    2    3    4    5    6    7    8    9  




This receptor, from the same or other species and bound to the same or other ligands, is also present in the following networks:
Show PDB Class SubFamily Type SubType Species Orthosteric Ligand Other Ligand(s) Protein Partners Resolution Date DOI
8QW4FProteinFrizzledFZD3Homo sapiens---2.92024-09-04doi.org/10.1038/s41467-024-51451-1
8JHIFProteinFrizzledFZD3Homo sapiens--chim(NtGsXLas-Gs)/β1/γ23.22024-01-1710.1038/s41421-023-00627-y




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Download 8JHC.zip



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