Color ConSurf Grade
      No Conservation data available
      1
      2
      3
      4
      5
      6
      7
      8
      9

Index: hub id, click on each number to highlight the corresponding hub in the 3D visualization.

Hub: the hub being considered.

Avg Int. Strength: the average interaction strength of all the links of the corresponding hub.

Num Of Links: the number of links of the corresponding hub.

Community: the id of the community the link belong to, otherwise 0.

ConSurf: this column reports the ConSurf conservation grades of each hub.

Index Hub Avg Int. Strength Num Of Links Community ConSurf
1L:L:?1 10.0481010
2R:R:F54 10.5414707
3R:R:N65 7.924529
4R:R:S71 2.87408
5R:R:I72 3.49407
6R:R:L89 5.8225419
7R:R:F94 6.8075427
8R:R:M101 5.918507
9R:R:W113 7.86667608
10R:R:H123 5.765405
11R:R:D127 10.765416
12R:R:F130 5.4175407
13R:R:Y132 5.34667615
14R:R:H137 6.984517
15R:R:I141 3.9275419
16R:R:D144 6.5975448
17R:R:R145 6.4525419
18R:R:Y146 7.37418
19R:R:D151 2.82405
20R:R:Y155 4.87547
21R:R:W172 6.3525419
22R:R:L174 2.8525403
23R:R:Y178 4.446505
24R:R:N217 7.55516
25R:R:V231 4.955417
26R:R:Y232 6.58419
27R:R:F236 2.87406
28R:R:V264 2.1875403
29R:R:E268 5.0425406
30R:R:W286 7.28714718
31R:R:Y289 7.5925416
32R:R:F290 8.582517
33R:R:V315 5.175417
34R:R:Y316 6.125617
35R:R:Y326 5.4175419
36R:R:Y330 7.0525408
37R:R:W332 7.135406
38R:R:F333 5.4475408
   

Color ConSurf Grade
      No Conservation data available
      1
      2
      3
      4
      5
      6
      7
      8
      9

Index: link id, click on each number to highlight the corresponding link in the 3D visualization.

Node1 Node2: the two nodes of the corresponding link.

Recurrence: the relative Recurrence in the pool of shortest paths.

Int. Strength: the interaction strength between the two nodes.

Hub1?, Hub2?: "Yes" if the corresponding node has more than 3 links, otherwise "No".

Community: the id of the community the link belong to, otherwise 0.

ConSurf1, ConSurf2: these columns report the ConSurf conservation grades of the two nodes involved in a link.

Index Node1 Node2 Recurrence Int. Strength Hub1? Hub2? Community ConSurf1 ConSurf2
1L:L:?1 R:R:Y316 63.262712.6YesYes107
2R:R:V100 R:R:Y316 27.18525.05NoYes177
3R:R:H123 R:R:V100 46.0655.54YesNo057
4R:R:H123 R:R:W113 36.04467.41YesYes058
5R:R:R107 R:R:W113 18.27312NoYes048
6R:R:E110 R:R:R107 13.04842.33NoNo044
7L:L:?1 R:R:D127 21.947424.81YesYes106
8R:R:D127 R:R:V100 21.18874.38YesNo167
9R:R:M101 R:R:Y316 30.66823.59YesYes077
10R:R:F54 R:R:M101 25.522812.44YesYes077
11R:R:F54 R:R:G57 15.29121.51YesNo076
12R:R:F56 R:R:G57 14.36111.51NoNo046
13R:R:F56 R:R:L60 14.03134.87NoNo045
14R:R:L324 R:R:L60 13.06152.77NoNo065
15R:R:L324 R:R:P323 12.93621.64NoNo069
16R:R:N65 R:R:P323 11.87416.52YesNo299
17L:L:?1 R:R:W286 75.26884.9YesYes108
18R:R:N318 R:R:W286 99.86816.78NoYes198
19R:R:N318 R:R:N322 1009.54NoNo199
20R:R:L138 R:R:N322 80.9095.49NoNo189
21R:R:L138 R:R:Y326 88.80537.03NoYes189
22R:R:I141 R:R:Y326 26.26163.63YesYes199
23R:R:I141 R:R:V86 14.51941.54YesNo098
24R:R:I72 R:R:V86 13.21333.07YesNo078
25R:R:A90 R:R:V68 13.23971.7NoNo099
26R:R:A90 R:R:N65 12.52064.69NoYes099
27R:R:R145 R:R:Y326 59.64116.17YesYes199
28R:R:R145 R:R:Y330 36.73079.26YesYes098
29R:R:W332 R:R:Y330 29.236814.47YesYes068
30R:R:F333 R:R:W332 20.93155.01YesYes086
31R:R:F328 R:R:F333 16.55783.22NoYes068
32R:R:F328 R:R:L67 14.77013.65NoNo067
33R:R:L67 R:R:S71 11.15511.5NoYes078
34R:R:I141 R:R:L85 23.18754.28YesNo097
35R:R:D144 R:R:L85 12.65254.07YesNo087
36R:R:L89 R:R:N322 18.56989.61YesNo199
37R:R:H137 R:R:L89 24.00555.14YesYes179
38R:R:V96 R:R:Y316 24.99512.52NoYes077
39R:R:F130 R:R:V96 22.23765.24YesNo077
40L:L:?1 R:R:Y132 12.80435.04YesYes105
41R:R:F290 R:R:W286 21.075.01YesYes178
42R:R:F221 R:R:W286 10.752714.03NoYes188
43R:R:F221 R:R:L135 10.32396.09NoNo087
44R:R:H137 R:R:S171 10.6018.37YesNo076
45R:R:R145 R:R:Y232 41.55954.12YesYes199
46R:R:M228 R:R:Y232 10.56144.79NoYes189
47R:R:S142 R:R:Y232 26.413412.72NoYes199
48R:R:S142 R:R:V231 25.29854.85NoYes197
49R:R:V231 R:R:Y146 18.26648.83YesYes178
50R:R:S150 R:R:Y146 11.15515.09NoYes068
51L:L:?1 R:R:N217 18.00918.86YesYes106
52R:R:N217 R:R:Y178 10.8784.65YesYes065
53R:R:F218 R:R:F290 30.668210.72NoYes057
54R:R:F218 R:R:F294 21.604310.72NoNo055
55R:R:F294 R:R:F298 12.42174.29NoNo054
56R:R:F290 R:R:N217 13.54314.83YesYes176
57L:L:?1 R:R:Y289 23.972615.12YesYes106
58R:R:L311 R:R:Y289 30.78043.52NoYes056
59R:R:D292 R:R:L311 21.5458.14NoNo045
60R:R:D292 R:R:T303 16.84818.67NoNo044
61R:R:V315 R:R:W286 13.2667.36YesYes178
62R:R:W286 R:R:Y132 12.00616.75YesYes185
63R:R:V315 R:R:Y289 11.90713.79YesYes176
Download PSN data

2D representation of the global metapath, ligand(s) interactions and
histograms of path distribution according to several parameters
(click on the image to enlarge it 🔍):

A 2D representation of the global communication in the network.

ConSurf Conservation Grade (See documentation): 

 n/a   1    2    3    4    5    6    7    8    9  

Number of shortest communication paths as a function of the average residue correlation.

Number of shortest communication paths as a function of the average interaction strength of their links.

Number of shortest communication paths as a function of the % of hub nodes in each path.

Number of shortest communication paths as a function of the number of nodes in each path.

Number of shortest communication paths as a function of the % of correlated nodes in each path.


2D representation of the interactions of this orthosteric/allosteric ligand.


Links and nodes colored according to ConSurf Conservation Grade (See documentation): 

 n/a   1    2    3    4    5    6    7    8    9  

Node1 Node2 LinkStrength Comm IsNode1Hub? IsNode2Hub? Node1Cons Node2Cons Node1Shell Node2Shell
L:L:?1 R:R:D127 24.81 1 Yes Yes 0 6 0 1
L:L:?1 R:R:V128 4.81 1 Yes No 0 4 0 1
L:L:?1 R:R:C131 5.12 1 Yes No 0 7 0 1
L:L:?1 R:R:Y132 5.04 1 Yes Yes 0 5 0 1
L:L:?1 R:R:N217 8.86 1 Yes Yes 0 6 0 1
L:L:?1 R:R:W286 4.9 1 Yes Yes 0 8 0 1
L:L:?1 R:R:Y289 15.12 1 Yes Yes 0 6 0 1
L:L:?1 R:R:V312 11.21 1 Yes No 0 5 0 1
L:L:?1 R:R:V315 8.01 1 Yes Yes 0 7 0 1
L:L:?1 R:R:Y316 12.6 1 Yes Yes 0 7 0 1
R:R:D127 R:R:V100 4.38 1 Yes No 6 7 1 2
R:R:V100 R:R:Y316 5.05 1 No Yes 7 7 2 1
R:R:M101 R:R:Y316 3.59 0 Yes Yes 7 7 2 1
R:R:C131 R:R:D127 4.67 1 No Yes 7 6 1 1
R:R:D127 R:R:Y316 9.2 1 Yes Yes 6 7 1 1
R:R:I183 R:R:V128 4.61 0 No No 5 4 2 1
R:R:F136 R:R:Y132 4.13 0 No Yes 5 5 2 1
R:R:N217 R:R:Y132 6.98 1 Yes Yes 6 5 1 1
R:R:V220 R:R:Y132 5.05 0 No Yes 5 5 2 1
R:R:W286 R:R:Y132 6.75 1 Yes Yes 8 5 1 1
R:R:F290 R:R:Y132 4.13 1 Yes Yes 7 5 2 1
R:R:N217 R:R:Y178 4.65 1 Yes Yes 6 5 1 2
R:R:V220 R:R:Y178 7.57 0 No Yes 5 5 2 2
R:R:N217 R:R:W213 12.43 1 Yes No 6 7 1 2
R:R:F290 R:R:N217 4.83 1 Yes Yes 7 6 2 1
R:R:F221 R:R:W286 14.03 1 No Yes 8 8 2 1
R:R:F221 R:R:F290 18.22 1 No Yes 8 7 2 2
R:R:S285 R:R:W286 6.18 1 No Yes 8 8 2 1
R:R:N318 R:R:S285 5.96 1 No No 9 8 2 2
R:R:F290 R:R:W286 5.01 1 Yes Yes 7 8 2 1
R:R:V315 R:R:W286 7.36 1 Yes Yes 7 8 1 1
R:R:N318 R:R:W286 6.78 1 No Yes 9 8 2 1
R:R:Y289 R:R:Y308 7.94 1 Yes No 6 3 1 2
R:R:L311 R:R:Y289 3.52 0 No Yes 5 6 2 1
R:R:V315 R:R:Y289 3.79 1 Yes Yes 7 6 1 1
R:R:V312 R:R:Y308 5.05 1 No No 5 3 1 2
R:R:V312 R:R:Y316 3.79 1 No Yes 5 7 1 1
R:R:V96 R:R:Y316 2.52 0 No Yes 7 7 2 1
R:R:I314 R:R:V315 1.54 0 No Yes 7 7 2 1

Location and physicochemical properties of the interaction partners of this ligand

Interactions of this ligand

Similarities between the interactions of this ligand and those of other networks

PDB Summary
PDB 8PM2_nogp
Class
SubFamily
Type
SubType
Species
Ligand
Other Ligand(s)
Protein Partners
PDB Resolution
Date
D.O.I.
Net Summary
Imin 3.5
Number of Linked Nodes 245
Number of Links 269
Number of Hubs 38
Number of Links mediated by Hubs 144
Number of Communities 5
Number of Nodes involved in Communities 44
Number of Links involved in Communities 61
Path Summary
Number Of Nodes in MetaPath 64
Number Of Links MetaPath 63
Number of Shortest Paths 32961
Length Of Smallest Path 3
Average Path Length 11.4514
Length of Longest Path 23
Minimum Path Strength 1.32
Average Path Strength 6.57725
Maximum Path Strength 21.255
Minimum Path Correlation 0.7
Average Path Correlation 0.91795
Maximum Path Correlation 0.99
Minimum % Of Corr. Nodes 5
Average % Of Corr. Nodes 47.2817
Maximum % Of Corr. Nodes 100
Minimum Path Hubs % 0
Average Path Hubs % 47.5547
Maximum Path Hubs % 100
AnnotationTypeLinks
Gene OntologyMolecular Function
Gene OntologyBiological Process
Gene OntologyCellular Component
SCOP2Domain Identifier• Transducin (heterotrimeric G protein), gamma chain
SCOP2Family Identifier• Transducin (heterotrimeric G protein), gamma chain
Membrane Protein Annotations-• Orientations of Proteins in Membranes database (OPM)   • Protein Data Bank of Transmembrane Proteins (PDBTM)   • MemProtMD


Details about the values in these tables can be found in the corresponding documentation page .
Code8IA
PDB ResiduesL:L:?1
Environment DetailsOpen EMBL-EBI Page
Code8IA
Name~{N},~{N}-dimethylcyclohexanamine
Synonyms
Identifier
FormulaC8 H17 N
Molecular Weight127.227
SMILES
PubChem7415
Formal Charge0
Total Atoms26
Total Chiral Atoms0
Total Bonds26
Total Aromatic Bonds0

PDBsumOpen PDBsum Page
ChainR
ProteinReceptor
UniProtQ5QD08
Sequence
>8PM2_nogp_Chain_R
ILYAVFGFG AVLAVCGNL LVMTSILHF RQLHSPANF LVASLACAD 
FLVGVMVMP FSMVRSVEG CWYFGDSYC KLHTCFDVS FCYCSLFHL 
CFISVDRYI AVSDPLAYP TRFTASVSG KCITFSWLL SISYGFSLI 
YGGCQIAVN QTWVFINFS VFLIPTLVM ITVYSKIFL IAKQQAQNI 
EKMSKDRVA KRERKAAKT LGIAVAAFL LSWLPYFID SFIDAFLGF 
ITPTYVYEI LVWIVYYNS AMNPLIYAF FYPWFRKAI


Click on each residue to open a popup with some information about it.

ConSurf Conservation Grade (See documentation): 

 n/a   1    2    3    4    5    6    7    8    9  




This receptor, from the same or other species and bound to the same or other ligands, is also present in the following networks:
Show PDB Class SubFamily Type SubType Species Orthosteric Ligand Other Ligand(s) Protein Partners Resolution Date DOI
8PM2AAmineTrace Amine ReceptorsTA7Mus musculusDMCH-Gs/β1/γ22.922023-08-09doi.org/10.1101/2023.07.07.547762
8PM2 (No Gprot) AAmineTrace Amine ReceptorsTA7Mus musculusDMCH-2.922023-08-09doi.org/10.1101/2023.07.07.547762




You can download a compressed (zip) file with structure(s), 3D outputs (as PyMol and VMD scripts) and numerical data files (as csv and plain text files).

Download 8PM2_nogp.zip



You can click to copy the link of this page to easily come back here later

or use this QR code to link and share this page.



You can also  read or  download a guide explaining the meaning of all files and numerical data.