Color ConSurf Grade
      No Conservation data available
      1
      2
      3
      4
      5
      6
      7
      8
      9

Index: hub id, click on each number to highlight the corresponding hub in the 3D visualization.

Hub: the hub being considered.

Avg Int. Strength: the average interaction strength of all the links of the corresponding hub.

Num Of Links: the number of links of the corresponding hub.

Community: the id of the community the link belong to, otherwise 0.

ConSurf: this column reports the ConSurf conservation grades of each hub.

Index Hub Avg Int. Strength Num Of Links Community ConSurf
1L:L:?1 7.09714710
2R:R:F12 4.835449
3R:R:L13 4.465456
4R:R:Q20 5.08462
5R:R:Y35 5.165409
6R:R:N42 5.612509
7R:R:I49 4.3875477
8R:R:Y60 6.362579
9R:R:L66 4.1125429
10R:R:D70 5.365429
11R:R:Y94 2.8125444
12R:R:Y102 4.975405
13R:R:F104 6.555415
14R:R:F107 5.2425494
15R:R:N109 5.75513
16R:R:L110 4.4925425
17R:R:D111 4.7475428
18R:R:L114 3.8475427
19R:R:Y123 4.5825407
20R:R:Y132 5.3125489
21R:R:H155 9.306513
22R:R:I174 3.142508
23R:R:H176 7.692518
24R:R:F177 8.158517
25R:R:F178 7.528516
26R:R:L185 3.1675436
27R:R:T192 3.544536
28R:R:N195 3.82435
29R:R:E202 7.875402
30R:R:P210 2.92516
31R:R:Y218 3.975409
32R:R:H244 6.6425409
33R:R:Y252 4.42857716
34R:R:D270 5.9675405
35R:R:Y277 6.194507
36R:R:M296 3.3125407
   

Color ConSurf Grade
      No Conservation data available
      1
      2
      3
      4
      5
      6
      7
      8
      9

Index: link id, click on each number to highlight the corresponding link in the 3D visualization.

Node1 Node2: the two nodes of the corresponding link.

Recurrence: the relative Recurrence in the pool of shortest paths.

Int. Strength: the interaction strength between the two nodes.

Hub1?, Hub2?: "Yes" if the corresponding node has more than 3 links, otherwise "No".

Community: the id of the community the link belong to, otherwise 0.

ConSurf1, ConSurf2: these columns report the ConSurf conservation grades of the two nodes involved in a link.

Index Node1 Node2 Recurrence Int. Strength Hub1? Hub2? Community ConSurf1 ConSurf2
1L:L:?1 R:R:F104 34.30515.41YesYes105
2R:R:F104 R:R:F178 20.919710.72YesYes156
3R:R:F178 R:R:Q100 29.47684.68YesNo069
4R:R:C179 R:R:Q100 28.51293.05NoNo099
5R:R:C179 R:R:C97 20.65737.28NoNo099
6R:R:C97 R:R:F12 11.85562.79NoYes099
7R:R:I174 R:R:L187 16.59252.85YesNo088
8R:R:L187 R:R:S171 14.95953NoNo085
9R:R:E173 R:R:S171 13.32064.31NoNo035
10R:R:E173 R:R:L13 10.00745.3NoYes536
11R:R:I174 R:R:L184 16.71042.85YesNo086
12L:L:?1 R:R:Y259 13.621213.88YesNo008
13R:R:D180 R:R:Y259 39.543110.34NoNo088
14R:R:D180 R:R:L181 32.70742.71NoNo084
15R:R:L181 R:R:M101 31.99412.83NoNo045
16R:R:M101 R:R:M163 31.2665.78NoNo054
17R:R:L184 R:R:M163 15.95282.83NoNo064
18R:R:Y259 R:R:Y277 29.88064.96NoYes087
19R:R:T77 R:R:V78 11.22773.17NoNo065
20L:L:?1 R:R:I207 29.694910.56YesNo003
21R:R:I207 R:R:I255 31.00662.94NoNo033
22R:R:F251 R:R:I255 84.15337.54NoNo063
23R:R:F251 R:R:T281 1009.08NoNo067
24R:R:N285 R:R:T281 99.55194.39NoNo097
25R:R:D70 R:R:N285 47.36338.08YesNo299
26R:R:D70 R:R:N42 26.70012.69YesYes099
27R:R:N42 R:R:S67 17.5245.96YesNo098
28R:R:I45 R:R:S67 15.92634.64NoNo088
29R:R:I45 R:R:S290 14.496710.84NoNo088
30R:R:M296 R:R:S290 12.94033.07YesNo078
31R:R:D70 R:R:L66 28.70452.71YesYes299
32R:R:L114 R:R:L66 50.77085.54YesYes279
33R:R:L114 R:R:N65 72.18572.75YesNo077
34R:R:F61 R:R:N65 70.12829.67NoNo067
35R:R:C141 R:R:F61 68.0592.79NoNo076
36R:R:C141 R:R:P58 47.28673.77NoNo079
37R:R:D111 R:R:N285 51.95282.69YesNo289
38R:R:D111 R:R:L66 24.73995.43YesYes289
39R:R:D111 R:R:T69 27.27492.89YesNo285
40R:R:L114 R:R:T69 23.48712.95YesNo275
41R:R:P58 R:R:Y132 43.01844.17NoYes099
42R:R:C141 R:R:F62 20.01184.19NoNo077
43R:R:F62 R:R:V117 15.60216.55NoNo075
44L:L:?1 R:R:H155 11.03325.71YesYes103
45R:R:H155 R:R:I105 10.60282.65YesNo134
46R:R:A156 R:R:I105 14.64113.25NoNo054
47L:L:?1 R:R:N109 16.27716.1YesYes103
48R:R:N109 R:R:S112 22.8712.98YesNo135
49R:R:S112 R:R:Y252 21.09956.36NoYes156
50R:R:I214 R:R:Y252 28.84892.42NoYes086
51R:R:M136 R:R:Y132 36.99345.99NoYes899
52R:R:I135 R:R:M136 34.89172.92NoNo079
53R:R:I135 R:R:V124 28.38323.07NoNo077
54R:R:V124 R:R:Y120 26.20198.83NoNo076
55R:R:I214 R:R:Y218 25.57112.42NoYes089
56R:R:H244 R:R:Y218 13.03469.8YesYes099
57R:R:Y120 R:R:Y123 24.01471.99NoYes067
58R:R:C127 R:R:Y123 12.99046.72NoYes087
59R:R:L144 R:R:V117 11.18941.49NoNo075
60R:R:L185 R:R:M163 22.86222.83YesNo064
61R:R:D180 R:R:P183 11.05974.83NoNo086
62R:R:T274 R:R:Y277 18.34054.99NoYes077
63R:R:P183 R:R:Y266 16.23885.56NoNo062
64R:R:C241 R:R:Y218 10.95061.34NoYes099
65R:R:D270 R:R:Y266 13.037611.49YesNo052
66R:R:F251 R:R:Y252 32.94333.09NoYes066
67R:R:I255 R:R:Y277 53.69496.04NoYes037
68R:R:H176 R:R:T274 17.86596.85YesNo087
Download PSN data

2D representation of the global metapath, ligand(s) interactions and
histograms of path distribution according to several parameters
(click on the image to enlarge it 🔍):

A 2D representation of the global communication in the network.

ConSurf Conservation Grade (See documentation): 

 n/a   1    2    3    4    5    6    7    8    9  

Number of shortest communication paths as a function of the average residue correlation.

Number of shortest communication paths as a function of the average interaction strength of their links.

Number of shortest communication paths as a function of the % of hub nodes in each path.

Number of shortest communication paths as a function of the number of nodes in each path.

Number of shortest communication paths as a function of the % of correlated nodes in each path.


2D representation of the interactions of this orthosteric/allosteric ligand.


Links and nodes colored according to ConSurf Conservation Grade (See documentation): 

 n/a   1    2    3    4    5    6    7    8    9  

Node1 Node2 LinkStrength Comm IsNode1Hub? IsNode2Hub? Node1Cons Node2Cons Node1Shell Node2Shell
L:L:?1 R:R:F104 5.41 1 Yes Yes 0 5 0 1
L:L:?1 R:R:N109 6.1 1 Yes Yes 0 3 0 1
L:L:?1 R:R:H155 5.71 1 Yes Yes 0 3 0 1
L:L:?1 R:R:H159 3.8 1 Yes No 0 4 0 1
L:L:?1 R:R:I199 4.22 1 Yes No 0 4 0 1
L:L:?1 R:R:I207 10.56 1 Yes No 0 3 0 1
L:L:?1 R:R:Y259 13.88 1 Yes No 0 8 0 1
R:R:F104 R:R:F73 7.5 1 Yes No 5 5 1 2
R:R:F104 R:R:F178 10.72 1 Yes Yes 5 6 1 2
R:R:N109 R:R:S112 2.98 1 Yes No 3 5 1 2
R:R:F113 R:R:N109 4.83 0 No Yes 3 3 2 1
R:R:H155 R:R:N109 8.93 1 Yes Yes 3 3 1 1
R:R:N109 R:R:V206 5.91 1 Yes No 3 3 1 2
R:R:H155 R:R:H159 9.55 1 Yes No 3 4 1 1
R:R:E202 R:R:H155 19.69 0 Yes Yes 2 3 2 1
R:R:D180 R:R:Y259 10.34 0 No No 8 8 2 1
R:R:E202 R:R:V206 7.13 0 Yes No 2 3 2 2
R:R:I207 R:R:I255 2.94 0 No No 3 3 1 2
R:R:I207 R:R:I256 2.94 0 No No 3 4 1 2
R:R:I255 R:R:Y277 6.04 0 No Yes 3 7 2 2
R:R:Y259 R:R:Y277 4.96 0 No Yes 8 7 1 2
R:R:H155 R:R:I105 2.65 1 Yes No 3 4 1 2
R:R:H159 R:R:I105 2.65 1 No No 4 4 1 2
R:R:F104 R:R:T77 2.59 1 Yes No 5 6 1 2
R:R:F178 R:R:T77 2.59 1 Yes No 6 6 2 2
R:R:F200 R:R:I199 1.26 0 No No 4 4 2 1

Location and physicochemical properties of the interaction partners of this ligand

Interactions of this ligand

Similarities between the interactions of this ligand and those of other networks

PDB Summary
PDB 8UXY_nogp
Class
SubFamily
Type
SubType
Species
Ligand
Other Ligand(s)
Protein Partners
PDB Resolution
Date
D.O.I.
Net Summary
Imin 2.69
Number of Linked Nodes 264
Number of Links 288
Number of Hubs 36
Number of Links mediated by Hubs 137
Number of Communities 10
Number of Nodes involved in Communities 48
Number of Links involved in Communities 59
Path Summary
Number Of Nodes in MetaPath 69
Number Of Links MetaPath 68
Number of Shortest Paths 59917
Length Of Smallest Path 3
Average Path Length 16.022
Length of Longest Path 37
Minimum Path Strength 1.54
Average Path Strength 5.04437
Maximum Path Strength 14.62
Minimum Path Correlation 0.71
Average Path Correlation 0.922126
Maximum Path Correlation 0.99
Minimum % Of Corr. Nodes 3.44828
Average % Of Corr. Nodes 42.116
Maximum % Of Corr. Nodes 100
Minimum Path Hubs % 0
Average Path Hubs % 31.2725
Maximum Path Hubs % 100

Details about the values in these tables can be found in the corresponding documentation page .
CodeXUQ
PDB ResiduesL:L:?1
Environment DetailsOpen EMBL-EBI Page
CodeXUQ
NameLevomenthol
SynonymsL-menthol
Identifier
FormulaC10 H20 O
Molecular Weight156.265
SMILES
PubChem16666
Formal Charge0
Total Atoms31
Total Chiral Atoms3
Total Bonds31
Total Aromatic Bonds0

PDBsumOpen PDBsum Page
ChainR
ProteinReceptor
UniProt-
Sequence
>8UXY_nogp_Chain_R
SEFLLLGLS SQPEQQNLL FALFLSMYL VTVLGNLLI ILAISSDSH 
LHTPMYFFL SNLSFTDIC FSSVTVPKM LVNIQTQSK SISYAGCLT 
QMYFFIAFG NLDSFLLAV MAYDRYVAI CHPLHYTTI MSPRLCVLL 
VALSWVLSN LHALLHTLL MARLSFCAS NEIPHFFCD LSPLLKLSC 
SDTHVNELV IFTEGLLVI VTPFLCILV SYVRIVSTV LKIPSAKGK 
WKAFSTCGS HLTVVSLFY GTIIGVYFQ PLSTYSVKD TVATVMYTV 
VTPMLNPFI YSLRNKDMK GALRKL


Click on each residue to open a popup with some information about it.

ConSurf Conservation Grade (See documentation): 

 n/a   1    2    3    4    5    6    7    8    9  




This receptor, from the same or other species and bound to the same or other ligands, is also present in the following networks:
Show PDB Class SubFamily Type SubType Species Orthosteric Ligand Other Ligand(s) Protein Partners Resolution Date DOI
8UXYO2Odorant receptorsOdorant family 1consOR1Homo sapiensL-menthol-Gs/β1/γ23.32024-10-30doi.org/10.1038/s41586-024-08126-0
8UXY (No Gprot) O2Odorant receptorsOdorant family 1consOR1Homo sapiensL-menthol-3.32024-10-30doi.org/10.1038/s41586-024-08126-0




You can download a compressed (zip) file with structure(s), 3D outputs (as PyMol and VMD scripts) and numerical data files (as csv and plain text files).

Download 8UXY_nogp.zip



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